Wall clock time and date at job start Tue Mar 31 2020 11:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.46958 * 2 1 4 4 C 1.34760 * 116.99746 * 180.02562 * 3 2 1 5 5 O 1.21500 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.47471 * 119.99900 * 180.02562 * 4 3 2 7 7 C 1.39588 * 120.21904 * 359.97438 * 6 4 3 8 8 C 1.37899 * 119.96445 * 180.02562 * 7 6 4 9 9 C 1.38551 * 120.41508 * 0.02562 * 8 7 6 10 10 C 1.38019 * 120.44431 * 359.67785 * 9 8 7 11 11 C 1.39218 * 120.02515 * 0.59792 * 10 9 8 12 12 C 1.48148 * 120.21102 * 179.70099 * 11 10 9 13 13 C 1.39155 * 120.42970 * 64.72349 * 12 11 10 14 14 C 1.40922 * 118.11711 * 179.97438 * 13 12 11 15 15 C 1.41378 * 120.56628 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99688 * 203.54090 * 15 14 13 17 17 C 1.39901 * 120.00469 * 23.55007 * 15 14 13 18 18 N 1.30862 * 119.99742 * 17.60035 * 17 15 14 19 19 Si 1.86796 * 120.00295 * 197.60302 * 17 15 14 20 20 H 1.48505 * 109.47162 * 94.68744 * 19 17 15 21 21 H 1.48491 * 109.47319 * 214.69019 * 19 17 15 22 22 H 1.48504 * 109.47190 * 334.68990 * 19 17 15 23 23 C 1.40814 * 118.86273 * 359.97438 * 14 13 12 24 24 N 1.31503 * 120.72658 * 359.97438 * 23 14 13 25 25 C 1.32150 * 122.09320 * 0.02562 * 24 23 14 26 26 F 1.35103 * 119.46925 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46758 * 300.00329 * 1 2 3 28 28 H 1.09002 * 109.47145 * 59.99644 * 1 2 3 29 29 H 1.08995 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46588 * 240.00435 * 2 1 3 31 31 H 1.08989 * 109.47241 * 120.00079 * 2 1 3 32 32 H 1.07998 * 120.01921 * 359.97438 * 7 6 4 33 33 H 1.07993 * 119.79633 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.77491 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.98666 * 180.32882 * 10 9 8 36 36 H 1.08003 * 120.94146 * 0.02562 * 13 12 11 37 37 H 0.96996 * 119.99722 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.63827 * 179.72564 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5820 -0.0005 6 6 3.9136 2.9083 0.0000 7 6 3.0676 4.0185 0.0005 8 6 3.6003 5.2905 0.0005 9 6 4.9733 5.4758 -0.0006 10 6 5.8256 4.3902 0.0050 11 6 5.3077 3.0980 -0.0007 12 6 6.2188 1.9298 -0.0014 13 6 7.0526 1.6857 1.0856 14 6 7.8992 0.5602 1.0336 15 6 8.7670 0.2631 2.1094 16 1 9.6529 -0.3311 1.9403 17 6 8.4783 0.7386 3.3931 18 7 7.2701 1.1501 3.6819 19 14 9.8172 0.7862 4.6947 20 1 10.4414 2.1335 4.7138 21 1 9.2248 0.4962 6.0251 22 1 10.8500 -0.2334 4.3799 23 6 7.8651 -0.2639 -0.1077 24 7 7.0580 0.0088 -1.1094 25 6 6.2506 1.0548 -1.0959 26 9 5.4434 1.2852 -2.1545 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.9963 3.8815 0.0001 33 1 2.9432 6.1475 0.0005 34 1 5.3794 6.4766 -0.0010 35 1 6.8947 4.5433 0.0095 36 1 7.0505 2.3397 1.9450 37 1 7.0700 1.4802 4.5718 38 1 8.5118 -1.1271 -0.1626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244025005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:02 Heat of formation + Delta-G solvation = -93.991259 kcal Electronic energy + Delta-G solvation = -26157.833506 eV Core-core repulsion = 22264.856098 eV Total energy + Delta-G solvation = -3892.977408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.44142 -41.68825 -40.29958 -39.41072 -37.59739 -35.98285 -34.06054 -33.09203 -32.20859 -31.90281 -30.15135 -27.37099 -25.90091 -24.62102 -23.85368 -23.52904 -22.46267 -21.69978 -19.40226 -18.94803 -18.52319 -17.92284 -17.81622 -17.53112 -17.11360 -16.62752 -16.47499 -15.78463 -15.56094 -15.23221 -15.15396 -14.75558 -14.36688 -14.26585 -14.08350 -13.79487 -13.65081 -13.60664 -13.54752 -13.07972 -12.91078 -12.88552 -12.78476 -12.56403 -12.41612 -12.17888 -11.78597 -11.60148 -11.57617 -11.23206 -10.41301 -10.27166 -10.04279 -9.76135 -9.24953 -8.75570 -6.47463 -0.37008 0.21407 0.66456 0.86060 1.39748 1.48888 1.54974 1.58308 1.60417 2.17110 2.57101 2.77803 3.29220 3.49641 3.64772 3.69284 3.93054 3.93107 4.05441 4.12367 4.27094 4.28363 4.41151 4.45097 4.64180 4.68470 4.82872 4.88374 4.92788 4.97537 5.08109 5.10083 5.15263 5.30606 5.34953 5.43180 5.47344 5.59209 5.73119 5.89912 5.94881 6.37455 6.63902 6.66808 6.75165 7.37038 8.18713 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004972 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.369088 B = 5630.663256 C = 6052.679079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.492 3.508 5 O -0.518 6.518 6 C -0.142 4.142 7 C -0.060 4.060 8 C -0.124 4.124 9 C -0.069 4.069 10 C -0.131 4.131 11 C 0.006 3.994 12 C -0.088 4.088 13 C -0.112 4.112 14 C 0.035 3.965 15 C -0.468 4.468 16 H 0.095 0.905 17 C 0.036 3.964 18 N -0.816 5.816 19 Si 0.993 3.007 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.254 1.254 23 C -0.010 4.010 24 N -0.511 5.511 25 C 0.185 3.815 26 F -0.152 7.152 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.294 0.706 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 9.718 -0.341 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.338 3.662 5 O -0.407 6.407 6 C -0.143 4.143 7 C -0.078 4.078 8 C -0.141 4.141 9 C -0.086 4.086 10 C -0.149 4.149 11 C 0.005 3.995 12 C -0.092 4.092 13 C -0.137 4.137 14 C 0.030 3.970 15 C -0.497 4.497 16 H 0.113 0.887 17 C -0.181 4.181 18 N -0.441 5.441 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.177 1.177 23 C -0.170 4.170 24 N -0.224 5.224 25 C 0.031 3.969 26 F -0.132 7.132 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.176 0.824 33 H 0.195 0.805 34 H 0.190 0.810 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.020 8.940 -0.920 13.460 hybrid contribution 0.515 -0.495 0.895 1.145 sum -9.506 8.445 -0.025 12.715 Atomic orbital electron populations 1.21790 0.88894 1.04535 1.04143 1.23252 0.97849 0.79313 1.01578 1.86485 1.22678 1.33377 1.84490 1.21622 0.81029 0.90679 0.72868 1.90980 1.60508 1.43727 1.45500 1.19276 0.93010 0.90732 1.11311 1.21670 1.00502 0.91223 0.94397 1.21652 0.95669 0.97173 0.99626 1.21792 0.93503 0.99466 0.93858 1.21401 1.01377 0.90503 1.01620 1.18940 0.91021 0.93673 0.95908 1.19181 0.99151 0.96237 0.94603 1.21618 0.97774 0.98054 0.96282 1.18750 0.93026 0.91117 0.94078 1.19863 1.07949 1.29585 0.92266 0.88735 1.26938 0.98045 0.91349 1.01788 1.69873 1.21128 1.29523 1.23544 0.85019 0.77728 0.80256 0.75754 1.18144 1.19390 1.17687 1.22463 1.01666 1.01370 0.91531 1.66158 1.06841 1.17683 1.31685 1.17485 0.96653 0.96783 0.86017 1.91333 1.71585 1.94020 1.56239 0.90698 0.90600 0.88157 0.92546 0.92677 0.82381 0.80462 0.81011 0.84955 0.85196 0.89504 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.29 71.98 0.74 -1.84 16 2 C 0.05 1.61 6.20 71.98 0.45 2.06 16 3 O -0.35 -12.28 9.47 -56.71 -0.54 -12.82 16 4 C 0.49 21.26 7.47 70.26 0.53 21.79 16 5 O -0.52 -27.23 11.98 19.83 0.24 -26.99 16 6 C -0.14 -5.51 5.75 -19.92 -0.11 -5.62 16 7 C -0.06 -1.63 9.61 22.52 0.22 -1.41 16 8 C -0.12 -2.53 10.02 22.26 0.22 -2.30 16 9 C -0.07 -1.55 10.02 22.29 0.22 -1.33 16 10 C -0.13 -4.32 9.73 22.45 0.22 -4.10 16 11 C 0.01 0.24 5.05 -19.81 -0.10 0.14 16 12 C -0.09 -4.54 3.94 -19.96 -0.08 -4.62 16 13 C -0.11 -6.03 8.51 23.15 0.20 -5.83 16 14 C 0.03 1.92 5.59 -21.22 -0.12 1.80 16 15 C -0.47 -24.18 9.08 23.45 0.21 -23.97 16 16 H 0.09 4.57 7.90 -2.91 -0.02 4.54 16 17 C 0.04 1.70 5.17 85.24 0.44 2.14 16 18 N -0.82 -41.25 10.92 21.82 0.24 -41.01 16 19 Si 0.99 35.66 29.59 68.60 2.03 37.69 16 20 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 21 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 22 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 23 C -0.01 -0.57 10.96 85.37 0.94 0.37 16 24 N -0.51 -28.95 10.33 -193.65 -2.00 -30.95 16 25 C 0.19 10.20 6.16 85.11 0.52 10.72 16 26 F -0.15 -8.11 15.80 44.97 0.71 -7.40 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.16 3.44 7.61 -2.91 -0.02 3.42 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.13 7.02 6.19 -2.91 -0.02 7.00 16 37 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 38 H 0.15 7.35 8.06 -2.91 -0.02 7.33 16 Total: -1.00 -73.80 335.89 6.27 -67.54 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.10 Total: 25.96 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.49 Total: -12.01 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.76 Total: -71.96 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.30 Total: -39.81 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.71 Total: -7.40 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -73.80 6.27 -67.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244025005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.456 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds