Wall clock time and date at job start Tue Mar 31 2020 11:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47205 * 2 1 4 4 C 1.34720 * 116.99808 * 179.97438 * 3 2 1 5 5 O 1.21452 * 120.00406 * 0.02562 * 4 3 2 6 6 C 1.47874 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.39569 * 119.57010 * 179.73177 * 6 4 3 8 8 C 1.38179 * 119.20922 * 179.72932 * 7 6 4 9 9 C 1.40065 * 118.36578 * 0.53176 * 8 7 6 10 10 C 1.47799 * 120.46245 * 179.71112 * 9 8 7 11 11 C 1.40020 * 119.89741 * 309.74583 * 10 9 8 12 12 C 1.36194 * 120.13726 * 179.72227 * 11 10 9 13 13 C 1.41012 * 119.93189 * 0.55404 * 12 11 10 14 14 C 1.40980 * 120.09672 * 179.74526 * 13 12 11 15 15 H 1.08001 * 119.99942 * 150.08541 * 14 13 12 16 16 C 1.40095 * 120.00032 * 330.08362 * 14 13 12 17 17 N 1.30738 * 120.00030 * 161.74407 * 16 14 13 18 18 Si 1.86800 * 119.99982 * 341.74871 * 16 14 13 19 19 H 1.48507 * 109.47204 * 95.41315 * 18 16 14 20 20 H 1.48494 * 109.47301 * 215.41441 * 18 16 14 21 21 H 1.48500 * 109.47304 * 335.41775 * 18 16 14 22 22 C 1.40874 * 119.80859 * 359.71930 * 13 12 11 23 23 C 1.36480 * 119.86103 * 0.02562 * 22 13 12 24 24 F 1.35094 * 119.97166 * 179.97438 * 23 22 13 25 25 C 1.40004 * 119.07502 * 359.72686 * 9 8 7 26 26 N 1.31251 * 120.70263 * 0.02562 * 25 9 8 27 27 H 1.08999 * 109.47096 * 60.00390 * 1 2 3 28 28 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 300.00114 * 1 2 3 30 30 H 1.08998 * 109.47117 * 239.99886 * 2 1 3 31 31 H 1.09001 * 109.46708 * 119.99975 * 2 1 3 32 32 H 1.08004 * 120.39799 * 0.02562 * 7 6 4 33 33 H 1.08000 * 120.81912 * 180.26496 * 8 7 6 34 34 H 1.08002 * 119.93400 * 359.97438 * 11 10 9 35 35 H 1.07995 * 120.03708 * 180.27470 * 12 11 10 36 36 H 0.97006 * 120.00247 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.07358 * 180.02562 * 22 13 12 38 38 H 1.08004 * 119.65340 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0895 0.5822 0.0005 6 6 3.9149 2.9118 0.0000 7 6 5.2998 3.0843 0.0062 8 6 5.8200 4.3644 0.0000 9 6 4.9287 5.4449 -0.0010 10 6 5.4346 6.8336 -0.0012 11 6 6.4021 7.2240 0.9327 12 6 6.8758 8.5009 0.9333 13 6 6.3825 9.4349 -0.0010 14 6 6.8665 10.7590 0.0000 15 1 6.8985 11.3229 -0.9205 16 6 7.3060 11.3432 1.1951 17 7 8.0706 12.4032 1.1620 18 14 6.7997 10.6077 2.8358 19 1 7.8642 9.6907 3.3169 20 1 6.5996 11.6963 3.8257 21 1 5.5328 9.8510 2.6693 22 6 5.4049 9.0408 -0.9356 23 6 4.9397 7.7578 -0.9324 24 9 4.0019 7.3776 -1.8274 25 6 3.5518 5.1910 -0.0015 26 7 3.0974 3.9597 -0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9572 2.2274 0.0110 33 1 6.8875 4.5279 0.0003 34 1 6.7765 6.5101 1.6514 35 1 7.6253 8.7991 1.6514 36 1 8.3753 12.8075 1.9895 37 1 5.0243 9.7525 -1.6534 38 1 2.8562 6.0172 -0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245253700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:22 Heat of formation + Delta-G solvation = -87.081120 kcal Electronic energy + Delta-G solvation = -24439.494184 eV Core-core repulsion = 20546.816422 eV Total energy + Delta-G solvation = -3892.677762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.15534 -40.70340 -39.51289 -37.85608 -36.64668 -34.27433 -32.90498 -31.91061 -31.73264 -29.91372 -29.63498 -26.41758 -24.25593 -23.54865 -22.88894 -21.60239 -21.47221 -20.63600 -18.23451 -18.08334 -17.19993 -16.65540 -16.56995 -16.06911 -15.51802 -15.31678 -15.17004 -14.70798 -14.53927 -14.47632 -13.80523 -13.40547 -13.32445 -13.23335 -13.12416 -12.90131 -12.83404 -12.41897 -12.15969 -12.08762 -11.77271 -11.53603 -11.33823 -11.04580 -10.81146 -10.74527 -10.65692 -10.21720 -9.96435 -9.80166 -9.56078 -9.44872 -9.00975 -8.06166 -7.67007 -7.37714 -4.89500 0.54833 1.39925 2.02964 2.32812 2.52174 2.54772 2.87703 3.00516 3.08108 3.67890 3.90636 4.11611 4.21921 4.72832 4.75693 4.84175 4.95909 5.01327 5.04565 5.06572 5.16898 5.18416 5.39325 5.55797 5.56745 5.73099 5.76501 5.82083 6.07075 6.12095 6.24299 6.30297 6.36688 6.47992 6.68467 6.74408 7.04686 7.08778 7.24521 7.46948 7.56873 7.70873 7.92161 8.02469 8.20936 8.34429 9.61248 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.002743 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.252650 B =10205.469396 C =10453.918459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.334 6.334 4 C 0.531 3.469 5 O -0.511 6.511 6 C 0.046 3.954 7 C -0.094 4.094 8 C -0.100 4.100 9 C 0.005 3.995 10 C -0.255 4.255 11 C -0.021 4.021 12 C -0.248 4.248 13 C 0.114 3.886 14 C -0.413 4.413 15 H 0.099 0.901 16 C 0.080 3.920 17 N -0.778 5.778 18 Si 0.916 3.084 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.239 1.239 22 C -0.248 4.248 23 C 0.160 3.840 24 F -0.156 7.156 25 C 0.093 3.907 26 N -0.430 5.430 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.294 0.706 37 H 0.117 0.883 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 -14.030 1.124 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.250 6.250 4 C 0.375 3.625 5 O -0.400 6.400 6 C -0.089 4.089 7 C -0.115 4.115 8 C -0.125 4.125 9 C 0.002 3.998 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.267 4.267 13 C 0.110 3.890 14 C -0.439 4.439 15 H 0.117 0.883 16 C -0.143 4.143 17 N -0.399 5.399 18 Si 0.741 3.259 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.162 1.162 22 C -0.268 4.268 23 C 0.141 3.859 24 F -0.135 7.135 25 C -0.069 4.069 26 N -0.140 5.140 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.322 -14.310 1.163 16.116 hybrid contribution 0.774 -0.103 0.525 0.941 sum -6.548 -14.413 1.688 15.921 Atomic orbital electron populations 1.21790 0.92526 1.02743 1.03805 1.23062 0.95557 0.80428 1.02465 1.86709 1.23310 1.31575 1.83409 1.20836 0.80740 0.88701 0.72177 1.90816 1.60700 1.41675 1.46773 1.19791 0.90346 0.90263 1.08464 1.21902 0.94229 0.98630 0.96702 1.21739 1.00836 0.90790 0.99108 1.20096 0.93747 0.93972 0.91942 1.17737 1.10329 0.91214 1.06512 1.20223 0.92878 0.95729 0.95136 1.20776 1.06181 0.93950 1.05751 1.17538 0.88294 0.93296 0.89890 1.19706 1.30578 0.96797 0.96844 0.88294 1.26395 0.91169 0.94181 1.02585 1.69631 1.20787 1.17250 1.32222 0.86210 0.82148 0.78696 0.78835 1.19049 1.21239 1.16192 1.20655 1.04364 0.94278 1.07551 1.17236 0.87871 0.92869 0.87942 1.91393 1.63420 1.92088 1.66551 1.23064 0.93539 0.93026 0.97299 1.67497 1.39199 0.99072 1.08254 0.91346 0.90341 0.91355 0.91262 0.91274 0.83824 0.83814 0.87588 0.87324 0.89533 0.86543 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.33 -4.76 10.03 -40.55 -0.41 -5.17 16 4 C 0.53 8.24 7.94 34.67 0.28 8.51 16 5 O -0.51 -8.29 16.10 -19.23 -0.31 -8.60 16 6 C 0.05 0.74 6.75 -82.96 -0.56 0.18 16 7 C -0.09 -1.36 9.61 -39.11 -0.38 -1.74 16 8 C -0.10 -1.48 9.66 -38.92 -0.38 -1.86 16 9 C 0.00 0.08 5.32 -104.64 -0.56 -0.48 16 10 C -0.26 -4.84 5.52 -104.58 -0.58 -5.42 16 11 C -0.02 -0.40 9.46 -39.65 -0.38 -0.77 16 12 C -0.25 -5.18 7.10 -39.27 -0.28 -5.46 16 13 C 0.11 2.55 5.10 -106.81 -0.55 2.01 16 14 C -0.41 -9.82 9.55 -37.85 -0.36 -10.18 16 15 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 16 C 0.08 1.85 5.40 -17.32 -0.09 1.75 16 17 N -0.78 -18.25 13.92 55.55 0.77 -17.48 16 18 Si 0.92 18.25 24.51 -169.99 -4.17 14.09 16 19 H -0.26 -5.07 6.70 56.52 0.38 -4.69 16 20 H -0.29 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.24 -4.90 6.87 56.52 0.39 -4.52 16 22 C -0.25 -5.29 9.70 -39.22 -0.38 -5.67 16 23 C 0.16 3.23 7.11 -39.47 -0.28 2.95 16 24 F -0.16 -3.03 15.87 2.25 0.04 -2.99 16 25 C 0.09 1.57 10.04 -17.14 -0.17 1.39 16 26 N -0.43 -7.32 10.09 -9.48 -0.10 -7.42 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.80 7.63 -52.48 -0.40 1.40 16 33 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.11 1.72 8.05 -52.49 -0.42 1.30 16 35 H 0.11 2.23 4.72 -52.49 -0.25 1.98 16 36 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.16 2.60 7.78 -52.48 -0.41 2.19 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -25.56 337.31 -7.16 -32.72 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.03 Total: 4.49 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.05 Total: -14.72 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.68 Total: -24.90 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.72 Total: -13.77 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.17 Total: 14.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.56 -7.16 -32.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245253700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.360 kcal (2) G-P(sol) polarization free energy of solvation -25.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds