Wall clock time and date at job start Tue Mar 31 2020 11:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47205 * 2 1 4 4 C 1.34720 * 116.99808 * 179.97438 * 3 2 1 5 5 O 1.21452 * 120.00406 * 0.02562 * 4 3 2 6 6 C 1.47874 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.39569 * 119.57010 * 179.73177 * 6 4 3 8 8 C 1.38179 * 119.20922 * 179.72932 * 7 6 4 9 9 C 1.40065 * 118.36578 * 0.53176 * 8 7 6 10 10 C 1.47799 * 120.46245 * 179.71112 * 9 8 7 11 11 C 1.40020 * 119.89741 * 309.74583 * 10 9 8 12 12 C 1.36194 * 120.13726 * 179.72227 * 11 10 9 13 13 C 1.41012 * 119.93189 * 0.55404 * 12 11 10 14 14 C 1.40980 * 120.09672 * 179.74526 * 13 12 11 15 15 H 1.08001 * 119.99942 * 150.08541 * 14 13 12 16 16 C 1.40095 * 120.00032 * 330.08362 * 14 13 12 17 17 N 1.30738 * 120.00030 * 161.74407 * 16 14 13 18 18 Si 1.86800 * 119.99982 * 341.74871 * 16 14 13 19 19 H 1.48507 * 109.47204 * 95.41315 * 18 16 14 20 20 H 1.48494 * 109.47301 * 215.41441 * 18 16 14 21 21 H 1.48500 * 109.47304 * 335.41775 * 18 16 14 22 22 C 1.40874 * 119.80859 * 359.71930 * 13 12 11 23 23 C 1.36480 * 119.86103 * 0.02562 * 22 13 12 24 24 F 1.35094 * 119.97166 * 179.97438 * 23 22 13 25 25 C 1.40004 * 119.07502 * 359.72686 * 9 8 7 26 26 N 1.31251 * 120.70263 * 0.02562 * 25 9 8 27 27 H 1.08999 * 109.47096 * 60.00390 * 1 2 3 28 28 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 300.00114 * 1 2 3 30 30 H 1.08998 * 109.47117 * 239.99886 * 2 1 3 31 31 H 1.09001 * 109.46708 * 119.99975 * 2 1 3 32 32 H 1.08004 * 120.39799 * 0.02562 * 7 6 4 33 33 H 1.08000 * 120.81912 * 180.26496 * 8 7 6 34 34 H 1.08002 * 119.93400 * 359.97438 * 11 10 9 35 35 H 1.07995 * 120.03708 * 180.27470 * 12 11 10 36 36 H 0.97006 * 120.00247 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.07358 * 180.02562 * 22 13 12 38 38 H 1.08004 * 119.65340 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0895 0.5822 0.0005 6 6 3.9149 2.9118 0.0000 7 6 5.2998 3.0843 0.0062 8 6 5.8200 4.3644 0.0000 9 6 4.9287 5.4449 -0.0010 10 6 5.4346 6.8336 -0.0012 11 6 6.4021 7.2240 0.9327 12 6 6.8758 8.5009 0.9333 13 6 6.3825 9.4349 -0.0010 14 6 6.8665 10.7590 0.0000 15 1 6.8985 11.3229 -0.9205 16 6 7.3060 11.3432 1.1951 17 7 8.0706 12.4032 1.1620 18 14 6.7997 10.6077 2.8358 19 1 7.8642 9.6907 3.3169 20 1 6.5996 11.6963 3.8257 21 1 5.5328 9.8510 2.6693 22 6 5.4049 9.0408 -0.9356 23 6 4.9397 7.7578 -0.9324 24 9 4.0019 7.3776 -1.8274 25 6 3.5518 5.1910 -0.0015 26 7 3.0974 3.9597 -0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9572 2.2274 0.0110 33 1 6.8875 4.5279 0.0003 34 1 6.7765 6.5101 1.6514 35 1 7.6253 8.7991 1.6514 36 1 8.3753 12.8075 1.9895 37 1 5.0243 9.7525 -1.6534 38 1 2.8562 6.0172 -0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245253700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:21 Heat of formation + Delta-G solvation = -98.729210 kcal Electronic energy + Delta-G solvation = -24439.999283 eV Core-core repulsion = 20546.816422 eV Total energy + Delta-G solvation = -3893.182861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.75566 -41.89271 -40.75426 -39.44072 -37.75906 -35.88049 -34.32783 -33.12036 -32.63282 -31.45648 -31.17095 -27.86815 -25.56305 -24.79722 -23.93211 -23.14960 -22.79151 -22.01887 -19.76405 -19.39090 -18.38117 -18.06134 -17.68714 -17.38042 -17.07570 -16.92994 -16.71629 -16.25462 -15.74459 -15.48115 -15.03540 -14.95360 -14.69735 -14.53172 -14.33487 -14.13766 -14.02279 -13.69832 -13.60937 -13.03180 -12.96966 -12.93110 -12.70885 -12.51982 -12.34522 -11.98041 -11.78680 -11.59512 -11.55431 -11.24367 -10.96071 -10.73548 -10.37387 -9.65541 -9.26685 -9.04860 -6.64575 -0.72591 0.18141 0.49103 0.68387 1.24849 1.30621 1.44350 1.48421 1.51169 2.07690 2.39052 2.72688 3.03780 3.28478 3.53601 3.66717 3.72651 3.90054 3.93566 4.00149 4.05848 4.11467 4.27572 4.33197 4.49743 4.62903 4.70366 4.73659 4.78299 4.91483 4.94356 5.07513 5.09604 5.13795 5.32960 5.34331 5.43759 5.56243 5.63834 5.77886 6.04331 6.21156 6.39920 6.52937 6.62550 6.79169 8.00761 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.002743 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.252650 B =10205.469396 C =10453.918459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.346 6.346 4 C 0.531 3.469 5 O -0.520 6.520 6 C 0.042 3.958 7 C -0.087 4.087 8 C -0.081 4.081 9 C -0.018 4.018 10 C -0.230 4.230 11 C -0.017 4.017 12 C -0.254 4.254 13 C 0.105 3.895 14 C -0.457 4.457 15 H 0.066 0.934 16 C 0.051 3.949 17 N -0.821 5.821 18 Si 0.963 3.037 19 H -0.246 1.246 20 H -0.277 1.277 21 H -0.248 1.248 22 C -0.263 4.263 23 C 0.153 3.847 24 F -0.152 7.152 25 C 0.091 3.909 26 N -0.446 5.446 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.302 0.698 37 H 0.113 0.887 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -17.657 2.348 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.262 6.262 4 C 0.376 3.624 5 O -0.410 6.410 6 C -0.093 4.093 7 C -0.107 4.107 8 C -0.106 4.106 9 C -0.020 4.020 10 C -0.233 4.233 11 C -0.035 4.035 12 C -0.273 4.273 13 C 0.102 3.898 14 C -0.484 4.484 15 H 0.084 0.916 16 C -0.168 4.168 17 N -0.444 5.444 18 Si 0.785 3.215 19 H -0.171 1.171 20 H -0.204 1.204 21 H -0.172 1.172 22 C -0.283 4.283 23 C 0.133 3.867 24 F -0.131 7.131 25 C -0.070 4.070 26 N -0.156 5.156 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.749 -17.941 2.376 19.687 hybrid contribution 0.703 0.627 0.013 0.942 sum -7.046 -17.314 2.389 18.845 Atomic orbital electron populations 1.21827 0.90490 1.04485 1.03531 1.23431 0.97172 0.78694 1.03061 1.86702 1.22556 1.34017 1.82906 1.20784 0.81226 0.88382 0.72035 1.90807 1.61014 1.41841 1.47329 1.20162 0.91247 0.90390 1.07481 1.22144 0.93805 0.99309 0.95487 1.22006 1.01814 0.90051 0.96773 1.20031 0.94216 0.93405 0.94351 1.17993 1.08661 0.91900 1.04739 1.20581 0.92186 0.95487 0.95288 1.20917 1.06438 0.94489 1.05489 1.17651 0.88385 0.93100 0.90685 1.19601 1.34430 0.97882 0.96469 0.91586 1.26989 0.90741 0.94353 1.04749 1.69651 1.22586 1.18856 1.33318 0.85510 0.81670 0.78525 0.75793 1.17053 1.20367 1.17184 1.20742 1.04670 0.95128 1.07749 1.17332 0.88092 0.92816 0.88432 1.91399 1.63241 1.91959 1.66509 1.23091 0.93710 0.93191 0.97036 1.67508 1.39758 0.99257 1.09113 0.91651 0.87566 0.91569 0.90726 0.90628 0.81434 0.81160 0.83843 0.86793 0.88724 0.86926 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 0.91 6.19 71.98 0.45 1.36 16 3 O -0.35 -9.17 10.03 -56.30 -0.56 -9.74 16 4 C 0.53 15.19 7.94 70.37 0.56 15.75 16 5 O -0.52 -15.48 16.10 19.99 0.32 -15.16 16 6 C 0.04 1.24 6.75 41.86 0.28 1.52 16 7 C -0.09 -2.18 9.61 22.58 0.22 -1.96 16 8 C -0.08 -2.06 9.66 22.70 0.22 -1.84 16 9 C -0.02 -0.55 5.32 -19.88 -0.11 -0.66 16 10 C -0.23 -8.14 5.52 -19.83 -0.11 -8.25 16 11 C -0.02 -0.60 9.46 22.23 0.21 -0.39 16 12 C -0.25 -10.28 7.10 22.47 0.16 -10.12 16 13 C 0.11 4.80 5.10 -21.28 -0.11 4.69 16 14 C -0.46 -22.92 9.55 23.39 0.22 -22.70 16 15 H 0.07 3.59 8.06 -2.91 -0.02 3.57 16 16 C 0.05 2.42 5.40 85.31 0.46 2.88 16 17 N -0.82 -40.19 13.92 21.85 0.30 -39.89 16 18 Si 0.96 37.21 24.51 68.60 1.68 38.89 16 19 H -0.25 -8.68 6.70 99.48 0.67 -8.01 16 20 H -0.28 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.25 -9.85 6.87 99.48 0.68 -9.17 16 22 C -0.26 -11.40 9.70 22.50 0.22 -11.18 16 23 C 0.15 6.01 7.11 22.34 0.16 6.17 16 24 F -0.15 -5.79 15.87 44.97 0.71 -5.08 16 25 C 0.09 2.87 10.04 85.21 0.86 3.73 16 26 N -0.45 -14.19 10.09 -183.89 -1.86 -16.05 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.17 3.42 7.63 -2.91 -0.02 3.39 16 33 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.14 3.91 8.05 -2.91 -0.02 3.89 16 35 H 0.11 4.47 4.72 -2.91 -0.01 4.46 16 36 H 0.30 13.10 8.29 -92.70 -0.77 12.33 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.16 4.98 7.78 -2.91 -0.02 4.96 16 Total: -1.00 -56.07 337.31 6.07 -50.01 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 1.04 Total: 19.15 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.43 Total: -22.13 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -1.55 Total: -55.94 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.24 Total: -24.90 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.71 Total: -5.08 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 1.68 Total: 38.89 kcal Total: -56.07 6.07 -50.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245253700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.723 kcal (2) G-P(sol) polarization free energy of solvation -56.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds