Wall clock time and date at job start Tue Mar 31 2020 11:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47120 * 2 1 4 4 C 1.34710 * 116.99532 * 180.02562 * 3 2 1 5 5 O 1.21445 * 120.00195 * 359.97438 * 4 3 2 6 6 C 1.47922 * 119.99463 * 180.02562 * 4 3 2 7 7 C 1.39491 * 119.59623 * 179.97438 * 6 4 3 8 8 C 1.38290 * 119.18428 * 179.97438 * 7 6 4 9 9 C 1.39768 * 118.38622 * 0.02562 * 8 7 6 10 10 C 1.48284 * 120.44005 * 179.97438 * 9 8 7 11 11 C 1.39754 * 119.99245 * 359.97438 * 10 9 8 12 12 C 1.38601 * 120.34560 * 180.02562 * 11 10 9 13 13 F 1.35099 * 119.83176 * 179.97438 * 12 11 10 14 14 C 1.37947 * 120.33697 * 0.02562 * 12 11 10 15 15 C 1.40721 * 119.98140 * 0.02562 * 14 12 11 16 16 C 1.41434 * 120.17195 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99659 * 154.72492 * 16 15 14 18 18 C 1.39925 * 119.99639 * 334.73147 * 16 15 14 19 19 N 1.30829 * 120.00343 * 342.83174 * 18 16 15 20 20 Si 1.86800 * 119.99836 * 162.83514 * 18 16 15 21 21 H 1.48507 * 109.47036 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47411 * 119.99388 * 20 18 16 23 23 H 1.48494 * 109.47332 * 239.99905 * 20 18 16 24 24 C 1.38813 * 119.99471 * 179.72851 * 10 9 8 25 25 C 1.39736 * 119.12243 * 359.97438 * 9 8 7 26 26 N 1.31319 * 120.73596 * 359.74950 * 25 9 8 27 27 H 1.08995 * 109.47621 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46905 * 300.00236 * 1 2 3 29 29 H 1.08999 * 109.47245 * 59.99509 * 1 2 3 30 30 H 1.09005 * 109.46905 * 239.99764 * 2 1 3 31 31 H 1.09002 * 109.47371 * 119.99734 * 2 1 3 32 32 H 1.08001 * 120.41244 * 359.95224 * 7 6 4 33 33 H 1.07994 * 120.80906 * 180.02562 * 8 7 6 34 34 H 1.08006 * 119.83023 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.01335 * 179.97438 * 14 12 11 36 36 H 0.97002 * 120.00006 * 179.97438 * 19 18 16 37 37 H 1.07994 * 120.17037 * 359.96744 * 24 10 9 38 38 H 1.08000 * 119.62806 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0892 0.5822 -0.0005 6 6 3.9149 2.9123 0.0000 7 6 5.2990 3.0853 0.0000 8 6 5.8183 4.3670 -0.0001 9 6 4.9283 5.4446 0.0005 10 6 5.4355 6.8380 0.0010 11 6 6.8119 7.0804 0.0016 12 6 7.2941 8.3798 0.0026 13 9 8.6266 8.6022 0.0037 14 6 6.4203 9.4472 0.0037 15 6 5.0316 9.2193 0.0043 16 6 4.1321 10.3107 0.0048 17 1 3.1359 10.1894 -0.3941 18 6 4.5330 11.5474 0.5221 19 7 5.5845 11.6226 1.2970 20 14 3.5669 13.0912 0.1064 21 1 2.4299 12.7394 -0.7818 22 1 3.0482 13.7023 1.3565 23 1 4.4546 14.0591 -0.5865 24 6 4.5433 7.9014 -0.0041 25 6 3.5540 5.1916 0.0005 26 7 3.0983 3.9600 -0.0049 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.9570 2.2289 0.0004 33 1 6.8857 4.5313 -0.0005 34 1 7.5035 6.2508 0.0020 35 1 6.8017 10.4576 0.0049 36 1 5.8626 12.4800 1.6553 37 1 3.4792 7.7170 -0.0091 38 1 2.8589 6.0182 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245258719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:37 Heat of formation + Delta-G solvation = -87.575770 kcal Electronic energy + Delta-G solvation = -24158.353336 eV Core-core repulsion = 20265.654124 eV Total energy + Delta-G solvation = -3892.699211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.83021 -40.77988 -39.64762 -37.55342 -36.66594 -34.30655 -32.69947 -31.98782 -31.63424 -29.91913 -28.63466 -25.82811 -25.13931 -23.55351 -23.17411 -21.65597 -20.75790 -20.57651 -18.30267 -17.81047 -17.22304 -16.67503 -16.21472 -15.97666 -15.36309 -15.16168 -14.58107 -14.53661 -14.47542 -14.41019 -14.25982 -13.54254 -13.51082 -13.32195 -12.99468 -12.88396 -12.16640 -12.12566 -12.10568 -11.80564 -11.74048 -11.38361 -11.25387 -11.04967 -10.78766 -10.66925 -10.63229 -10.34031 -9.90269 -9.85959 -9.50892 -9.43475 -9.10475 -7.73972 -7.39501 -7.02123 -4.69307 0.41687 1.33032 2.15217 2.44933 2.48660 2.80183 2.95944 3.00005 3.02413 3.74817 3.93920 4.15896 4.36114 4.72595 4.73103 4.80787 4.88858 4.99654 5.04376 5.05489 5.25755 5.28915 5.42979 5.56786 5.65315 5.75882 5.76998 5.97393 6.07724 6.17576 6.28520 6.32392 6.58582 6.71215 6.75469 6.93980 7.19306 7.37329 7.45538 7.53166 7.64795 7.89251 7.97911 8.27476 8.53614 8.56039 9.91115 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.002812 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.355615 B = 9954.464572 C =11426.412055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.334 6.334 4 C 0.531 3.469 5 O -0.509 6.509 6 C 0.055 3.945 7 C -0.097 4.097 8 C -0.093 4.093 9 C -0.020 4.020 10 C -0.024 4.024 11 C -0.256 4.256 12 C 0.107 3.893 13 F -0.164 7.164 14 C -0.186 4.186 15 C 0.124 3.876 16 C -0.451 4.451 17 H 0.087 0.913 18 C 0.074 3.926 19 N -0.783 5.783 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.199 4.199 25 C 0.096 3.904 26 N -0.430 5.430 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.286 0.714 37 H 0.109 0.891 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 -12.419 -1.726 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.249 6.249 4 C 0.375 3.625 5 O -0.397 6.397 6 C -0.080 4.080 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.022 4.022 10 C -0.025 4.025 11 C -0.276 4.276 12 C 0.088 3.912 13 F -0.143 7.143 14 C -0.207 4.207 15 C 0.121 3.879 16 C -0.479 4.479 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.218 4.218 25 C -0.065 4.065 26 N -0.141 5.141 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.527 -12.778 -1.579 14.011 hybrid contribution 0.921 0.802 0.002 1.222 sum -4.605 -11.976 -1.577 12.927 Atomic orbital electron populations 1.21792 0.92480 1.02768 1.03846 1.23075 0.95593 0.80337 1.02498 1.86708 1.23205 1.31667 1.83339 1.20821 0.80816 0.88641 0.72251 1.90821 1.60720 1.41620 1.46578 1.19847 0.90373 0.90401 1.07365 1.21935 0.94299 0.98654 0.96799 1.21722 1.01190 0.90854 0.98012 1.20394 0.94196 0.94468 0.93137 1.17879 0.92757 0.89325 1.02550 1.20269 0.94362 0.94384 1.18618 1.17515 0.76124 0.94267 1.03300 1.91357 1.32608 1.95809 1.94503 1.21446 0.93275 0.97699 1.08232 1.17299 0.91418 0.91674 0.87501 1.19668 1.00147 0.93580 1.34543 0.89472 1.26004 0.94993 1.01192 0.92405 1.69795 1.22027 1.27892 1.20975 0.86170 0.80430 0.80262 0.79470 1.18079 1.19733 1.19493 1.21193 0.97500 0.91896 1.11200 1.23089 0.93562 0.93282 0.96565 1.67566 1.39112 0.99007 1.08378 0.90327 0.91318 0.91320 0.91235 0.91230 0.83617 0.83481 0.87591 0.85030 0.90318 0.87355 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.33 -4.63 10.03 -40.52 -0.41 -5.03 16 4 C 0.53 8.01 7.94 34.70 0.28 8.29 16 5 O -0.51 -8.08 16.10 -19.22 -0.31 -8.39 16 6 C 0.06 0.86 6.75 -83.00 -0.56 0.30 16 7 C -0.10 -1.37 9.62 -39.10 -0.38 -1.74 16 8 C -0.09 -1.37 9.52 -38.99 -0.37 -1.74 16 9 C -0.02 -0.33 5.90 -104.63 -0.62 -0.95 16 10 C -0.02 -0.47 5.87 -104.99 -0.62 -1.09 16 11 C -0.26 -5.22 9.42 -38.88 -0.37 -5.59 16 12 C 0.11 2.42 7.28 -39.55 -0.29 2.14 16 13 F -0.16 -3.61 17.26 2.25 0.04 -3.57 16 14 C -0.19 -4.51 8.66 -38.75 -0.34 -4.85 16 15 C 0.12 2.96 5.56 -106.87 -0.59 2.36 16 16 C -0.45 -10.68 9.05 -37.73 -0.34 -11.02 16 17 H 0.09 1.95 7.90 -52.49 -0.41 1.53 16 18 C 0.07 1.69 5.14 -17.35 -0.09 1.60 16 19 N -0.78 -18.73 10.96 55.55 0.61 -18.12 16 20 Si 0.91 17.06 29.59 -169.99 -5.03 12.03 16 21 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 24 C -0.20 -4.20 9.18 -38.50 -0.35 -4.55 16 25 C 0.10 1.56 10.59 -17.21 -0.18 1.37 16 26 N -0.43 -7.05 10.10 -9.55 -0.10 -7.15 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.15 1.78 7.63 -52.49 -0.40 1.38 16 33 H 0.15 1.92 6.29 -52.49 -0.33 1.59 16 34 H 0.11 1.89 6.24 -52.48 -0.33 1.56 16 35 H 0.13 3.34 6.18 -52.49 -0.32 3.01 16 36 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 37 H 0.11 2.05 6.21 -52.49 -0.33 1.72 16 38 H 0.17 2.53 6.21 -52.49 -0.33 2.20 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -26.63 337.97 -8.00 -34.63 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -3.70 Total: 5.90 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -4.20 Total: -15.39 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.51 Total: -25.27 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.72 Total: -13.42 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.63 -8.00 -34.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245258719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.949 kcal (2) G-P(sol) polarization free energy of solvation -26.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds