Wall clock time and date at job start Tue Mar 31 2020 11:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34784 * 116.99943 * 2 1 4 4 O 1.21548 * 120.00516 * 359.97438 * 3 2 1 5 5 C 1.47162 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.39914 * 120.09059 * 5.85247 * 5 3 2 7 7 C 1.36446 * 120.16925 * 179.97438 * 6 5 3 8 8 C 1.39735 * 120.37344 * 359.97438 * 7 6 5 9 9 C 1.48287 * 119.90723 * 179.97438 * 8 7 6 10 10 C 1.39863 * 119.96471 * 180.02562 * 9 8 7 11 11 C 1.38206 * 120.41339 * 180.02562 * 10 9 8 12 12 C 1.38086 * 120.35788 * 0.02562 * 11 10 9 13 13 F 1.35097 * 120.03709 * 180.02562 * 12 11 10 14 14 C 1.41045 * 119.92853 * 359.97438 * 12 11 10 15 15 C 1.41328 * 120.20648 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00060 * 334.09962 * 15 14 12 17 17 C 1.39919 * 119.99882 * 153.81589 * 15 14 12 18 18 N 1.30850 * 120.00387 * 347.14878 * 17 15 14 19 19 Si 1.86804 * 119.99791 * 167.14285 * 17 15 14 20 20 H 1.48496 * 109.47107 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47044 * 120.00344 * 19 17 15 22 22 H 1.48502 * 109.47029 * 240.00249 * 19 17 15 23 23 C 1.38747 * 119.97005 * 0.27812 * 9 8 7 24 24 C 1.39145 * 120.18281 * 0.25746 * 8 7 6 25 25 C 1.38712 * 119.82420 * 359.48832 * 24 8 7 26 26 N 1.38876 * 120.18582 * 180.26711 * 25 24 8 27 27 H 1.09006 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47267 * 300.00116 * 1 2 3 29 29 H 1.09002 * 109.47003 * 60.00170 * 1 2 3 30 30 H 1.07991 * 119.91328 * 359.95590 * 6 5 3 31 31 H 1.08001 * 119.80988 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.79742 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.82078 * 180.02562 * 11 10 9 34 34 H 0.97000 * 120.00451 * 179.97438 * 18 17 15 35 35 H 1.07996 * 120.17941 * 0.02562 * 23 9 8 36 36 H 1.08000 * 120.09053 * 179.74805 * 24 8 7 37 37 H 0.96999 * 120.00601 * 202.50655 * 26 25 24 38 38 H 0.96998 * 119.99358 * 22.51432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5335 1.2780 0.0006 6 6 4.2971 0.1121 -0.1223 7 6 5.6598 0.1818 -0.1225 8 6 6.3042 1.4156 -0.0008 9 6 7.7857 1.4793 -0.0016 10 6 8.4320 2.7136 0.1207 11 6 9.8123 2.7837 0.1205 12 6 10.5694 1.6354 -0.0011 13 9 11.9182 1.7114 0.0000 14 6 9.9330 0.3828 -0.1254 15 6 10.7021 -0.7962 -0.2507 16 1 11.6994 -0.7492 -0.6627 17 6 10.1739 -2.0235 0.1644 18 7 9.0865 -2.0555 0.8916 19 14 11.0210 -3.6166 -0.3195 20 1 12.2226 -3.3099 -1.1363 21 1 11.4293 -4.3517 0.9044 22 1 10.0846 -4.4545 -1.1109 23 6 8.5294 0.3149 -0.1290 24 6 5.5597 2.5841 0.1272 25 6 4.1739 2.5231 0.1230 26 7 3.4233 3.6852 0.2446 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8067 -0.8454 -0.2170 31 1 6.2436 -0.7218 -0.2181 32 1 7.8489 3.6176 0.2160 33 1 10.3014 3.7419 0.2160 34 1 8.7201 -2.9064 1.1791 35 1 8.0323 -0.6387 -0.2281 36 1 6.0593 3.5366 0.2253 37 1 2.5087 3.6407 0.5647 38 1 3.8137 4.5414 0.0094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245902025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:26 Heat of formation + Delta-G solvation = -103.086816 kcal Electronic energy + Delta-G solvation = -24872.572212 eV Core-core repulsion = 20979.200391 eV Total energy + Delta-G solvation = -3893.371821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.22313 -41.68442 -40.30402 -38.88464 -37.48516 -35.81645 -35.33726 -33.27280 -31.71358 -30.28729 -29.79314 -28.17745 -27.25921 -24.98732 -23.92013 -22.68218 -22.30076 -21.40077 -19.32781 -18.99333 -18.08133 -17.92012 -17.78620 -17.57495 -17.17846 -16.87240 -16.28136 -15.98887 -15.89041 -15.39440 -15.04387 -14.75822 -14.57780 -14.42469 -14.33559 -13.91232 -13.67814 -13.47959 -13.40065 -13.06834 -12.85124 -12.79909 -12.67840 -12.37182 -12.17368 -11.77983 -11.77778 -11.61669 -11.29796 -11.26147 -11.10403 -10.28467 -9.50142 -8.88249 -8.66455 -8.54177 -6.43004 -0.47836 0.65278 0.80724 0.91735 1.40049 1.44908 1.54217 1.68210 1.79909 2.21070 2.60834 2.95359 2.99438 3.58266 3.73207 3.86832 3.94054 4.06681 4.31421 4.34024 4.36764 4.40814 4.48058 4.60775 4.67593 4.73068 4.94980 5.00734 5.08652 5.18782 5.25730 5.27814 5.40324 5.55131 5.64091 5.70376 5.86923 6.01635 6.05689 6.18387 6.49530 6.53914 6.75520 6.78436 6.84939 6.99867 8.28598 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003627 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.770221 B = 7717.635035 C = 9456.728602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.523 3.477 4 O -0.541 6.541 5 C -0.242 4.242 6 C -0.010 4.010 7 C -0.190 4.190 8 C 0.052 3.948 9 C -0.069 4.069 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.053 4.053 13 F -0.170 7.170 14 C 0.049 3.951 15 C -0.492 4.492 16 H 0.069 0.931 17 C 0.041 3.959 18 N -0.816 5.816 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.256 1.256 23 C -0.129 4.129 24 C -0.205 4.205 25 C 0.282 3.718 26 N -0.852 5.852 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.293 0.707 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.410 0.590 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 3.098 -1.002 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.372 3.628 4 O -0.434 6.434 5 C -0.249 4.249 6 C -0.029 4.029 7 C -0.210 4.210 8 C 0.051 3.949 9 C -0.069 4.069 10 C -0.203 4.203 11 C -0.144 4.144 12 C -0.073 4.073 13 F -0.149 7.149 14 C 0.046 3.954 15 C -0.521 4.521 16 H 0.087 0.913 17 C -0.175 4.175 18 N -0.442 5.442 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.180 1.180 23 C -0.149 4.149 24 C -0.227 4.227 25 C 0.172 3.828 26 N -0.398 5.398 27 H 0.148 0.852 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.247 0.753 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.180 3.192 -0.861 15.536 hybrid contribution 0.685 -0.348 -0.010 0.768 sum -14.495 2.844 -0.871 14.797 Atomic orbital electron populations 1.23560 0.74418 1.05696 1.02643 1.86572 1.25169 1.31834 1.84081 1.20977 0.88673 0.81456 0.71662 1.90568 1.67147 1.36072 1.49566 1.18713 0.89016 0.94486 1.22650 1.20919 0.92761 0.97691 0.91516 1.20868 0.94696 0.97685 1.07714 1.19019 0.91659 0.93465 0.90770 1.18865 0.91499 0.93923 1.02616 1.20724 0.92737 0.96854 1.10000 1.20778 0.94613 0.96243 1.02746 1.18387 0.76023 0.96016 1.16878 1.91241 1.31139 1.97238 1.95297 1.17948 0.93641 0.91630 0.92185 1.19686 1.01851 0.92424 1.38127 0.91314 1.26630 0.95268 1.03763 0.91843 1.69789 1.19496 1.30023 1.24890 0.85146 0.79132 0.76247 0.79184 1.18908 1.18940 1.18043 1.21518 0.92341 0.97827 1.03173 1.20847 0.90952 0.99185 1.11703 1.17547 0.90382 0.86425 0.88472 1.42837 1.17866 1.05771 1.73278 0.85170 0.91710 0.91807 0.83272 0.86025 0.84066 0.84875 0.89559 0.85043 0.83288 0.75295 0.76120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -8.50 9.81 -56.95 -0.56 -9.06 16 3 C 0.52 14.36 7.86 70.17 0.55 14.91 16 4 O -0.54 -15.39 13.56 19.68 0.27 -15.12 16 5 C -0.24 -7.10 5.89 -19.97 -0.12 -7.22 16 6 C -0.01 -0.31 9.54 22.26 0.21 -0.10 16 7 C -0.19 -6.66 9.35 22.21 0.21 -6.45 16 8 C 0.05 1.90 5.88 -20.02 -0.12 1.78 16 9 C -0.07 -2.93 5.87 -20.09 -0.12 -3.04 16 10 C -0.18 -7.22 9.42 22.66 0.21 -7.01 16 11 C -0.13 -5.30 9.99 22.23 0.22 -5.08 16 12 C -0.05 -2.67 7.31 22.92 0.17 -2.50 16 13 F -0.17 -8.65 16.72 44.97 0.75 -7.90 16 14 C 0.05 2.61 5.57 -21.27 -0.12 2.49 16 15 C -0.49 -26.58 8.78 23.44 0.21 -26.38 16 16 H 0.07 3.76 7.73 -2.91 -0.02 3.73 16 17 C 0.04 1.99 5.23 85.25 0.45 2.43 16 18 N -0.82 -40.23 10.80 21.82 0.24 -39.99 16 19 Si 0.98 37.41 29.58 68.60 2.03 39.44 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 C -0.13 -6.37 8.04 22.95 0.18 -6.19 16 24 C -0.20 -6.20 9.30 22.60 0.21 -5.99 16 25 C 0.28 7.97 6.76 38.70 0.26 8.24 16 26 N -0.85 -19.29 8.54 -50.97 -0.44 -19.72 16 27 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.15 3.78 7.61 -2.91 -0.02 3.76 16 31 H 0.12 4.58 6.16 -2.91 -0.02 4.56 16 32 H 0.14 4.39 6.16 -2.91 -0.02 4.38 16 33 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 35 H 0.13 6.57 4.21 -2.91 -0.01 6.56 16 36 H 0.15 3.87 6.16 -2.91 -0.02 3.85 16 37 H 0.41 9.59 5.99 -92.71 -0.56 9.03 16 38 H 0.41 7.03 8.89 -92.71 -0.82 6.21 16 Total: -1.00 -61.34 329.36 5.68 -55.66 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.22 Total: 35.14 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.61 Total: -38.44 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.20 Total: -59.72 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.29 Total: -24.18 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.75 Total: -7.90 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -61.34 5.68 -55.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245902025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.425 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds