Wall clock time and date at job start Tue Mar 31 2020 10:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 N 1.46496 * 109.47134 * 239.99399 * 2 1 3 5 5 C 1.34775 * 120.00051 * 85.00251 * 4 2 1 6 6 O 1.21281 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00243 * 179.97438 * 5 4 2 8 8 H 1.09006 * 109.47412 * 60.00054 * 7 5 4 9 9 C 1.50703 * 109.47231 * 300.00078 * 7 5 4 10 10 H 1.07994 * 119.99919 * 324.87938 * 9 7 5 11 11 C 1.37876 * 120.00190 * 144.87895 * 9 7 5 12 12 N 1.31515 * 119.99901 * 5.19165 * 11 9 7 13 13 Si 1.86800 * 120.00262 * 185.19063 * 11 9 7 14 14 H 1.48499 * 109.46974 * 90.00106 * 13 11 9 15 15 H 1.48497 * 109.47274 * 210.00022 * 13 11 9 16 16 H 1.48497 * 109.47008 * 330.00195 * 13 11 9 17 17 C 1.50702 * 109.47571 * 180.02562 * 7 5 4 18 18 C 1.38238 * 119.99836 * 66.00596 * 17 7 5 19 19 C 1.38234 * 119.99748 * 179.81131 * 18 17 7 20 20 C 1.38233 * 120.00076 * 0.40566 * 19 18 17 21 21 C 1.38227 * 120.00074 * 359.85313 * 20 19 18 22 22 C 1.38233 * 120.00114 * 359.95486 * 21 20 19 23 23 C 1.50704 * 109.46896 * 119.99712 * 2 1 3 24 24 C 1.33390 * 125.19885 * 260.00335 * 23 2 1 25 25 C 1.38425 * 114.91675 * 180.02562 * 24 23 2 26 26 C 1.33386 * 114.92396 * 359.97438 * 25 24 23 27 27 S 1.75883 * 125.20545 * 80.02442 * 23 2 1 28 28 H 1.09008 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47329 * 300.00249 * 1 2 3 30 30 H 1.08995 * 109.46564 * 60.01010 * 1 2 3 31 31 H 0.96999 * 120.00483 * 264.99718 * 4 2 1 32 32 H 0.97000 * 120.00224 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.00002 * 0.02562 * 18 17 7 34 34 H 1.08007 * 119.99551 * 180.23396 * 19 18 17 35 35 H 1.08003 * 119.99559 * 179.83083 * 20 19 18 36 36 H 1.08004 * 120.00215 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00011 * 179.97438 * 22 21 20 38 38 H 1.07993 * 122.54202 * 359.74591 * 24 23 2 39 39 H 1.08001 * 122.54011 * 179.97438 * 25 24 23 40 40 H 1.08001 * 125.20235 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6500 -0.7288 -3.5873 8 1 1.9778 -1.5512 -3.8324 9 6 4.0317 -1.2705 -3.3251 10 1 4.7182 -0.7191 -2.6999 11 6 4.4193 -2.4701 -3.8834 12 7 3.6227 -3.0912 -4.7257 13 14 6.0757 -3.2132 -3.4436 14 1 5.9230 -4.0976 -2.2606 15 1 6.5833 -4.0060 -4.5921 16 1 7.0376 -2.1267 -3.1285 17 6 2.7013 0.2395 -4.7409 18 6 3.5855 1.3018 -4.7129 19 6 3.6352 2.1877 -5.7728 20 6 2.7950 2.0163 -6.8570 21 6 1.9071 0.9572 -6.8826 22 6 1.8601 0.0689 -5.8245 23 6 2.0324 -0.7104 1.2305 24 6 2.4670 -0.1116 2.3404 25 6 2.8811 -0.9715 3.3431 26 6 2.7822 -2.2685 3.0477 27 16 2.1356 -2.4556 1.4227 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 2.2492 -1.6319 -1.1525 32 1 3.8955 -3.9350 -5.1188 33 1 4.2398 1.4375 -3.8644 34 1 4.3287 3.0155 -5.7526 35 1 2.8320 2.7101 -7.6838 36 1 1.2503 0.8235 -7.7294 37 1 1.1660 -0.7584 -5.8443 38 1 2.4980 0.9626 2.4469 39 1 3.2558 -0.6190 4.2927 40 1 3.0571 -3.0796 3.7056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269290264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:21 Heat of formation + Delta-G solvation = 11.869661 kcal Electronic energy + Delta-G solvation = -23449.562868 eV Core-core repulsion = 20127.389110 eV Total energy + Delta-G solvation = -3322.173758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34177 -38.15753 -37.48304 -34.87128 -33.64957 -31.18699 -30.62496 -29.91386 -28.37625 -27.21500 -24.49745 -23.82512 -22.09818 -21.56636 -20.61000 -19.84664 -18.70098 -17.47461 -16.75843 -15.98729 -15.85243 -15.25854 -15.12356 -14.47387 -14.33615 -13.97535 -13.77982 -13.46341 -12.89671 -12.88234 -12.65261 -12.49386 -12.36848 -12.17009 -12.10191 -11.76733 -11.58026 -11.53748 -11.19626 -11.02968 -11.01163 -10.55546 -10.39645 -10.25310 -9.99843 -9.41891 -8.81600 -8.74458 -8.57612 -8.43019 -8.38992 -7.92239 -7.58620 -6.27252 -4.33598 1.02748 1.65859 2.05968 2.40102 2.42699 2.75860 3.19512 3.27311 3.30318 3.68024 3.99185 4.28636 4.72084 4.85293 5.06021 5.09518 5.40606 5.46792 5.52213 5.58218 5.74106 5.79313 5.83139 5.91824 6.01020 6.10147 6.23348 6.26421 6.34291 6.39638 6.48614 6.52124 6.61986 6.86809 6.99142 7.12453 7.20025 7.39192 7.46788 7.63452 7.76941 7.96977 8.08093 8.31485 8.70403 9.19245 9.32608 10.81040 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.004856 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.873857 B = 5764.529110 C = 7216.341186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.212 3.788 3 H 0.100 0.900 4 N -0.726 5.726 5 C 0.531 3.469 6 O -0.564 6.564 7 C 0.051 3.949 8 H 0.089 0.911 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.075 3.925 12 N -0.877 5.877 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.008 4.008 18 C -0.085 4.085 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.173 4.173 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.222 4.222 27 S 0.117 5.883 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.267 0.733 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 1.816 10.293 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.104 3.896 3 H 0.117 0.883 4 N -0.379 5.379 5 C 0.321 3.679 6 O -0.443 6.443 7 C 0.030 3.970 8 H 0.107 0.893 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.130 4.130 12 N -0.512 5.512 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.009 4.009 18 C -0.103 4.103 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.136 4.136 23 C -0.291 4.291 24 C -0.169 4.169 25 C -0.164 4.164 26 C -0.358 4.358 27 S 0.381 5.619 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.411 1.228 9.215 10.289 hybrid contribution 1.535 0.162 1.130 1.913 sum -2.875 1.390 10.345 10.826 Atomic orbital electron populations 1.22198 0.94505 1.02306 1.02551 1.19217 0.93663 0.96349 0.80333 0.88261 1.46125 1.68649 1.14386 1.08780 1.21691 0.74271 0.86837 0.85112 1.90579 1.51223 1.16791 1.85706 1.18118 0.99401 0.93510 0.85989 0.89332 1.20687 0.97145 1.05437 1.32004 0.91911 1.24957 0.97432 0.96633 0.94017 1.69915 1.36829 1.16748 1.27753 0.86515 0.83651 0.79380 0.78185 1.20202 1.21028 1.19615 1.19996 0.92144 0.93061 0.95693 1.20815 0.98020 0.94128 0.97351 1.20946 0.99827 0.99622 0.94872 1.20788 0.98482 0.98984 0.98476 1.20893 0.99665 0.96059 0.98393 1.20978 0.99509 0.98735 0.94374 1.24819 1.07426 0.96586 1.00285 1.20066 1.02583 1.01271 0.93003 1.20110 1.03330 0.92282 1.00712 1.25636 1.09529 1.00625 0.99994 1.84441 1.62183 1.04144 1.11164 0.92417 0.91915 0.91210 0.76104 0.92338 0.87181 0.87640 0.87751 0.87591 0.87047 0.84296 0.84496 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.47 37.16 0.35 -1.84 16 2 C 0.21 3.34 3.00 -69.08 -0.21 3.13 16 3 H 0.10 1.67 7.56 -51.93 -0.39 1.28 16 4 N -0.73 -13.60 4.96 -54.93 -0.27 -13.87 16 5 C 0.53 11.71 7.01 -10.99 -0.08 11.63 16 6 O -0.56 -13.41 15.08 5.56 0.08 -13.32 16 7 C 0.05 1.21 2.38 -94.08 -0.22 0.99 16 8 H 0.09 2.22 7.13 -51.93 -0.37 1.85 16 9 C -0.52 -12.94 7.46 -34.44 -0.26 -13.19 16 10 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 11 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 12 N -0.88 -23.13 12.84 55.43 0.71 -22.42 16 13 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C -0.01 -0.19 4.30 -104.62 -0.45 -0.64 16 18 C -0.08 -1.93 8.31 -39.58 -0.33 -2.26 16 19 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 20 C -0.15 -2.80 10.05 -39.59 -0.40 -3.20 16 21 C -0.13 -2.57 10.05 -39.59 -0.40 -2.97 16 22 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 23 C -0.17 -2.44 5.45 -36.00 -0.20 -2.63 16 24 C -0.14 -1.73 10.04 -41.21 -0.41 -2.15 16 25 C -0.13 -1.49 10.18 -41.21 -0.42 -1.91 16 26 C -0.22 -2.51 11.23 29.04 0.33 -2.19 16 27 S 0.12 1.55 22.31 -107.50 -2.40 -0.85 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.40 7.50 7.56 -40.82 -0.31 7.19 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.11 2.53 7.89 -52.49 -0.41 2.12 16 34 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 36 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.11 2.36 7.96 -52.49 -0.42 1.94 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -28.50 357.12 -10.34 -38.84 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.25 Total: 12.71 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.57 Total: -21.49 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.44 Total: -36.29 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.40 Total: -0.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.50 -10.34 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269290264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.708 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds