Wall clock time and date at job start Tue Mar 31 2020 10:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47196 * 2 1 4 4 N 1.46505 * 109.46890 * 240.00417 * 2 1 3 5 5 C 1.34776 * 119.99869 * 85.00376 * 4 2 1 6 6 O 1.21284 * 119.99980 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99873 * 180.02562 * 5 4 2 8 8 H 1.08998 * 109.47239 * 299.99692 * 7 5 4 9 9 C 1.50701 * 109.47201 * 59.99913 * 7 5 4 10 10 H 1.07998 * 120.00343 * 33.92607 * 9 7 5 11 11 C 1.37878 * 119.99681 * 213.92818 * 9 7 5 12 12 N 1.31514 * 120.00230 * 6.38777 * 11 9 7 13 13 Si 1.86807 * 119.99908 * 186.38923 * 11 9 7 14 14 H 1.48493 * 109.47039 * 90.00092 * 13 11 9 15 15 H 1.48500 * 109.47021 * 210.00017 * 13 11 9 16 16 H 1.48498 * 109.46900 * 329.99663 * 13 11 9 17 17 C 1.50707 * 109.47242 * 179.97438 * 7 5 4 18 18 C 1.38237 * 119.99892 * 293.84878 * 17 7 5 19 19 C 1.38231 * 119.99620 * 179.78680 * 18 17 7 20 20 C 1.38233 * 120.00154 * 0.43765 * 19 18 17 21 21 C 1.38236 * 120.00111 * 359.81716 * 20 19 18 22 22 C 1.38234 * 119.99642 * 114.11665 * 17 7 5 23 23 C 1.50697 * 109.47053 * 120.00774 * 2 1 3 24 24 C 1.33389 * 125.20322 * 259.99755 * 23 2 1 25 25 C 1.38425 * 114.92356 * 179.97438 * 24 23 2 26 26 C 1.33388 * 114.91676 * 359.97438 * 25 24 23 27 27 S 1.75875 * 109.59561 * 359.75944 * 26 25 24 28 28 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46783 * 299.99452 * 1 2 3 30 30 H 1.09001 * 109.47231 * 59.99576 * 1 2 3 31 31 H 0.97006 * 119.99937 * 264.99991 * 4 2 1 32 32 H 0.97007 * 120.00212 * 179.97438 * 12 11 9 33 33 H 1.08006 * 119.99787 * 359.97438 * 18 17 7 34 34 H 1.08005 * 119.99668 * 180.27315 * 19 18 17 35 35 H 1.08004 * 119.99971 * 179.83323 * 20 19 18 36 36 H 1.07996 * 120.00267 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.00416 * 359.97438 * 22 17 7 38 38 H 1.08001 * 122.53679 * 0.02562 * 24 23 2 39 39 H 1.07995 * 122.53777 * 180.02562 * 25 24 23 40 40 H 1.08006 * 125.19628 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8583 1.1586 -2.4116 7 6 2.6488 -0.7285 -3.5878 8 1 3.6479 -1.1211 -3.3988 9 6 1.7184 -1.8646 -3.9264 10 1 0.6593 -1.7700 -3.7374 11 6 2.2193 -3.0250 -4.4776 12 7 3.5188 -3.1911 -4.5920 13 14 1.0519 -4.3611 -5.0620 14 1 0.7060 -4.1276 -6.4871 15 1 1.7070 -5.6865 -4.9224 16 1 -0.1851 -4.3315 -4.2410 17 6 2.6991 0.2398 -4.7415 18 6 1.5284 0.7716 -5.2491 19 6 1.5749 1.6631 -6.3044 20 6 2.7913 2.0160 -6.8581 21 6 3.9617 1.4802 -6.3540 22 6 3.9155 0.5919 -5.2957 23 6 2.0323 -0.7106 1.2303 24 6 2.4671 -0.1121 2.3403 25 6 2.8802 -0.9721 3.3433 26 6 2.7802 -2.2690 3.0479 27 16 2.1268 -2.4559 1.4257 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.2490 -1.6318 -1.1528 32 1 3.8713 -4.0076 -4.9794 33 1 0.5777 0.4927 -4.8191 34 1 0.6605 2.0820 -6.6981 35 1 2.8274 2.7105 -7.6844 36 1 4.9121 1.7561 -6.7862 37 1 4.8299 0.1735 -4.9017 38 1 2.4941 0.9621 2.4486 39 1 3.2541 -0.6197 4.2931 40 1 3.0551 -3.0803 3.7058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269290265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:24 Heat of formation + Delta-G solvation = -2.227140 kcal Electronic energy + Delta-G solvation = -23418.466722 eV Core-core repulsion = 20095.681681 eV Total energy + Delta-G solvation = -3322.785041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99043 -39.57917 -38.73070 -36.26014 -35.52863 -32.97494 -32.03253 -31.54406 -29.45179 -28.92932 -25.98541 -25.26069 -23.42677 -23.17482 -22.11211 -21.28286 -19.94032 -18.81479 -18.50418 -17.65558 -17.39766 -16.60550 -16.40516 -16.10394 -15.84061 -15.63142 -15.30394 -14.73361 -14.65439 -14.13292 -14.04056 -13.93419 -13.58491 -13.54195 -13.31971 -13.21444 -13.10757 -12.89858 -12.86263 -12.76201 -12.35191 -12.19000 -11.96262 -11.66533 -11.56381 -11.28783 -10.72643 -10.45402 -10.05264 -9.61222 -9.56491 -9.42135 -9.27200 -8.23085 -6.33256 0.04836 0.65478 0.74621 0.79579 1.11140 1.40636 1.43279 1.51369 1.81621 1.92206 2.41282 2.51747 3.06700 3.26225 3.57315 4.18422 4.19053 4.23830 4.27224 4.29722 4.39019 4.48277 4.54845 4.59583 4.69045 4.73950 4.86269 4.90842 4.96296 5.11266 5.14278 5.20507 5.35138 5.36789 5.44141 5.53538 5.63213 5.67076 5.77859 5.82433 5.93690 6.22515 6.39320 6.65632 6.74418 7.33101 7.48706 8.85481 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004671 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.024169 B = 5993.121895 C = 7326.743285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.213 3.787 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.531 3.469 6 O -0.587 6.587 7 C 0.050 3.950 8 H 0.067 0.933 9 C -0.516 4.516 10 H 0.053 0.947 11 C 0.036 3.964 12 N -0.905 5.905 13 Si 0.950 3.050 14 H -0.280 1.280 15 H -0.278 1.278 16 H -0.266 1.266 17 C -0.040 4.040 18 C -0.109 4.109 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.200 4.200 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.208 4.208 27 S 0.080 5.920 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.403 0.597 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 3.288 11.149 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.107 3.893 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.320 3.680 6 O -0.468 6.468 7 C 0.029 3.971 8 H 0.085 0.915 9 C -0.554 4.554 10 H 0.071 0.929 11 C -0.166 4.166 12 N -0.542 5.542 13 Si 0.775 3.225 14 H -0.206 1.206 15 H -0.203 1.203 16 H -0.190 1.190 17 C -0.041 4.041 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.163 4.163 23 C -0.318 4.318 24 C -0.159 4.159 25 C -0.167 4.167 26 C -0.343 4.343 27 S 0.343 5.657 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.239 0.761 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.715 2.723 10.170 10.667 hybrid contribution 0.021 -0.277 0.446 0.525 sum -1.694 2.447 10.616 11.025 Atomic orbital electron populations 1.22110 0.93600 1.02453 1.02574 1.19272 0.94537 0.95564 0.79973 0.89350 1.46095 1.67708 1.14189 1.08943 1.21386 0.75294 0.86054 0.85226 1.90542 1.52827 1.17519 1.85871 1.18023 0.99426 0.92375 0.87259 0.91526 1.20720 0.92999 0.98103 1.43537 0.92904 1.25562 0.96355 0.99839 0.94826 1.69978 1.12501 1.27853 1.43898 0.85673 0.79460 0.78568 0.78768 1.20646 1.20346 1.19002 1.20121 0.93212 0.93717 0.97019 1.20848 0.97373 0.97481 0.96996 1.21338 0.99037 0.98255 0.96615 1.21285 0.91975 1.01534 1.01231 1.21302 0.99416 0.97398 0.96548 1.21147 0.96993 0.99399 0.98726 1.24581 1.10079 0.96875 1.00247 1.20414 1.00656 1.02414 0.92435 1.20433 1.02946 0.91874 1.01497 1.26019 1.07920 1.01720 0.98670 1.84686 1.63109 1.04120 1.13768 0.92336 0.89369 0.93441 0.76112 0.92293 0.88601 0.84567 0.83449 0.84207 0.87611 0.82745 0.81305 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.47 71.98 0.68 -3.77 16 2 C 0.21 6.93 3.00 44.24 0.13 7.06 16 3 H 0.09 3.04 7.56 -2.39 -0.02 3.02 16 4 N -0.72 -28.41 4.96 -446.09 -2.21 -30.63 16 5 C 0.53 24.75 7.01 87.66 0.61 25.36 16 6 O -0.59 -29.19 15.08 -3.04 -0.05 -29.23 16 7 C 0.05 2.52 2.44 -13.03 -0.03 2.49 16 8 H 0.07 3.61 7.00 -2.39 -0.02 3.60 16 9 C -0.52 -26.77 7.46 25.60 0.19 -26.58 16 10 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 11 C 0.04 1.88 5.45 84.65 0.46 2.34 16 12 N -0.91 -49.08 12.78 21.45 0.27 -48.80 16 13 Si 0.95 41.63 29.54 68.60 2.03 43.65 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 C -0.04 -1.93 4.30 -19.86 -0.09 -2.01 16 18 C -0.11 -4.97 8.31 22.27 0.19 -4.79 16 19 C -0.13 -5.11 10.05 22.27 0.22 -4.88 16 20 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 21 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 22 C -0.14 -6.45 9.67 22.27 0.22 -6.23 16 23 C -0.20 -5.51 5.44 24.59 0.13 -5.38 16 24 C -0.13 -2.89 10.04 21.22 0.21 -2.68 16 25 C -0.14 -2.58 10.18 21.22 0.22 -2.37 16 26 C -0.21 -4.08 11.23 66.72 0.75 -3.33 16 27 S 0.08 2.08 22.32 -56.49 -1.26 0.82 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.40 16.03 7.57 -92.70 -0.70 15.33 16 32 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 33 H 0.10 4.54 7.89 -2.91 -0.02 4.51 16 34 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.11 4.69 7.96 -2.91 -0.02 4.66 16 38 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -62.99 357.03 3.47 -59.52 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.35 Total: 38.65 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.35 Total: -33.98 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.94 Total: -79.43 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.26 Total: 0.82 kcal Total: -62.99 3.47 -59.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269290265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds