Wall clock time and date at job start Tue Mar 31 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99536 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47323 * 149.99569 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 C 1.38354 * 119.87147 * 90.00198 * 13 12 11 15 15 C 1.37999 * 120.15087 * 179.97438 * 14 13 12 16 16 C 1.39344 * 119.88891 * 0.02562 * 15 14 13 17 17 C 1.48373 * 120.12818 * 179.97438 * 16 15 14 18 18 C 1.39349 * 120.12124 * 309.73043 * 17 16 15 19 19 C 1.38016 * 119.87646 * 179.72025 * 18 17 16 20 20 C 1.38323 * 120.12290 * 0.55103 * 19 18 17 21 21 C 1.38327 * 120.24304 * 359.72025 * 20 19 18 22 22 C 1.38018 * 120.11929 * 359.97438 * 21 20 19 23 23 C 1.39426 * 119.74744 * 0.02562 * 16 15 14 24 24 Cl 1.73602 * 120.07769 * 180.02562 * 23 16 15 25 25 C 1.38179 * 119.84756 * 359.72170 * 23 16 15 26 26 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 28 28 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 29 29 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 30 30 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 31 31 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 32 32 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 33 33 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 34 34 H 1.08003 * 119.92221 * 359.97438 * 14 13 12 35 35 H 1.08001 * 120.05287 * 180.02562 * 15 14 13 36 36 H 1.08004 * 120.06161 * 359.96914 * 18 17 16 37 37 H 1.08001 * 119.94141 * 180.24599 * 19 18 17 38 38 H 1.07996 * 119.87570 * 179.70325 * 20 19 18 39 39 H 1.07997 * 119.93489 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.05816 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.94131 * 180.29633 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6470 -7.3604 0.0018 14 6 1.2872 -7.9481 -1.1980 15 6 0.5660 -9.1246 -1.2047 16 6 0.1992 -9.7212 0.0000 17 6 -0.5767 -10.9859 -0.0011 18 6 -1.7319 -11.0969 -0.7724 19 6 -2.4466 -12.2776 -0.7741 20 6 -2.0244 -13.3457 -0.0032 21 6 -0.8816 -13.2391 0.7687 22 6 -0.1557 -12.0652 0.7731 23 6 0.5633 -9.1246 1.2064 24 17 0.1115 -9.8608 2.7123 25 6 1.2900 -7.9493 1.2007 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8744 -4.9841 0.7828 32 1 3.0631 -6.0353 -0.8882 33 1 3.0630 -6.0345 0.8918 34 1 1.5714 -7.4849 -2.1313 35 1 0.2863 -9.5822 -2.1421 36 1 -2.0651 -10.2619 -1.3710 37 1 -3.3398 -12.3661 -1.3747 38 1 -2.5894 -14.2661 -0.0038 39 1 -0.5567 -14.0760 1.3691 40 1 0.7367 -11.9832 1.3759 41 1 1.5769 -7.4884 2.1344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308369131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:09 Heat of formation + Delta-G solvation = 28.097913 kcal Electronic energy + Delta-G solvation = -21766.291647 eV Core-core repulsion = 18442.777892 eV Total energy + Delta-G solvation = -3323.513755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13141 -38.74787 -36.73011 -35.90499 -33.50823 -32.51720 -31.29871 -30.80281 -30.31460 -28.49017 -25.55696 -23.66551 -23.35330 -22.31296 -22.16970 -20.89541 -20.51891 -17.68780 -16.41458 -16.29963 -16.13059 -15.80985 -15.06378 -14.87752 -14.72282 -14.44950 -14.17964 -13.98603 -13.73678 -13.54508 -13.26484 -12.88910 -12.72009 -12.32913 -12.17424 -11.74039 -11.63252 -11.54513 -11.41553 -11.20115 -11.06001 -10.93334 -10.74698 -10.54128 -10.03173 -9.58161 -9.37361 -9.16848 -9.15371 -8.94835 -8.40147 -8.35973 -7.88700 -6.00750 -4.03646 0.61194 1.09936 1.17099 1.41303 1.98949 3.31490 3.36974 3.37950 3.40788 3.61560 4.27087 4.43171 4.59755 4.67953 4.72812 4.74538 4.87209 4.96505 5.12011 5.17075 5.18046 5.33862 5.35168 5.37983 5.53449 5.66447 5.72215 5.77290 5.85471 5.98690 6.09703 6.21865 6.25408 6.28810 6.32572 6.36331 6.48328 6.64825 6.72675 6.93626 7.39677 7.69715 7.77554 7.90079 8.05796 8.41287 9.03569 9.60198 11.10594 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.002143 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.052463 B =13065.667461 C =13284.147392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.093 3.907 13 C -0.056 4.056 14 C -0.091 4.091 15 C -0.096 4.096 16 C -0.048 4.048 17 C -0.046 4.046 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.095 4.095 23 C -0.024 4.024 24 Cl -0.068 7.068 25 C -0.104 4.104 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.338 0.662 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 -28.069 0.350 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.036 4.036 13 C -0.057 4.057 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.049 4.049 17 C -0.047 4.047 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.113 4.113 23 C -0.050 4.050 24 Cl -0.039 7.039 25 C -0.124 4.124 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.218 -28.001 -0.191 28.028 hybrid contribution 0.658 0.955 1.115 1.609 sum -0.560 -27.046 0.924 27.067 Atomic orbital electron populations 1.69974 1.06033 1.26620 1.50536 1.25011 0.94858 0.99254 0.95294 0.86578 0.79774 0.83417 0.78116 1.20621 1.21221 1.19931 1.21164 0.92978 0.90972 1.51000 0.92729 1.19069 0.94009 0.90357 0.97793 1.22203 0.97056 0.88194 0.98803 1.60678 1.19410 1.01603 1.49974 1.20933 0.93638 0.87613 1.01380 1.19957 0.97596 0.95972 0.92190 1.21124 0.97016 0.94454 0.98350 1.21160 0.98103 0.95504 0.96616 1.18572 0.99585 0.94883 0.91824 1.18673 0.95264 0.92528 0.98188 1.21243 0.94243 0.97943 0.98507 1.21084 1.00005 0.93233 0.99668 1.21209 0.96764 0.98757 0.96876 1.21071 0.95700 0.97650 0.99631 1.21272 0.99857 0.92443 0.97731 1.20886 1.01739 0.96049 0.86368 1.98360 1.91509 1.82380 1.31667 1.20924 0.98323 0.94116 0.99009 0.92965 0.95608 0.96776 0.96492 0.92162 0.84443 0.90074 0.94587 0.84815 0.85016 0.85685 0.85873 0.86152 0.85998 0.85866 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 11 N -0.69 -11.90 6.49 -115.05 -0.75 -12.64 16 12 C 0.09 1.28 5.81 -4.97 -0.03 1.25 16 13 C -0.06 -0.70 5.40 -104.57 -0.56 -1.27 16 14 C -0.09 -1.04 9.68 -39.63 -0.38 -1.42 16 15 C -0.10 -1.01 9.52 -39.26 -0.37 -1.39 16 16 C -0.05 -0.54 5.48 -104.87 -0.57 -1.11 16 17 C -0.05 -0.49 5.11 -104.90 -0.54 -1.02 16 18 C -0.10 -0.96 9.52 -39.25 -0.37 -1.34 16 19 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 20 C -0.12 -0.92 10.04 -39.52 -0.40 -1.32 16 21 C -0.12 -1.02 10.03 -39.63 -0.40 -1.42 16 22 C -0.10 -0.92 8.18 -39.25 -0.32 -1.24 16 23 C -0.02 -0.28 6.28 -39.16 -0.25 -0.53 16 24 Cl -0.07 -0.76 25.99 -51.86 -1.35 -2.11 16 25 C -0.10 -1.27 9.47 -39.59 -0.37 -1.64 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.34 5.82 8.72 -39.29 -0.34 5.47 16 32 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 1.13 8.05 -52.49 -0.42 0.70 16 36 H 0.13 1.07 8.05 -52.48 -0.42 0.65 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 1.16 7.16 -52.48 -0.38 0.78 16 41 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -30.65 363.64 -12.19 -42.84 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.75 Total: 1.56 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -5.55 Total: -25.55 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.01 Total: -38.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.35 Total: -2.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.65 -12.19 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308369131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.942 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds