Wall clock time and date at job start Tue Mar 31 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99536 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47323 * 149.99569 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 C 1.38354 * 119.87147 * 90.00198 * 13 12 11 15 15 C 1.37999 * 120.15087 * 179.97438 * 14 13 12 16 16 C 1.39344 * 119.88891 * 0.02562 * 15 14 13 17 17 C 1.48373 * 120.12818 * 179.97438 * 16 15 14 18 18 C 1.39349 * 120.12124 * 309.73043 * 17 16 15 19 19 C 1.38016 * 119.87646 * 179.72025 * 18 17 16 20 20 C 1.38323 * 120.12290 * 0.55103 * 19 18 17 21 21 C 1.38327 * 120.24304 * 359.72025 * 20 19 18 22 22 C 1.38018 * 120.11929 * 359.97438 * 21 20 19 23 23 C 1.39426 * 119.74744 * 0.02562 * 16 15 14 24 24 Cl 1.73602 * 120.07769 * 180.02562 * 23 16 15 25 25 C 1.38179 * 119.84756 * 359.72170 * 23 16 15 26 26 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 28 28 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 29 29 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 30 30 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 31 31 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 32 32 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 33 33 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 34 34 H 1.08003 * 119.92221 * 359.97438 * 14 13 12 35 35 H 1.08001 * 120.05287 * 180.02562 * 15 14 13 36 36 H 1.08004 * 120.06161 * 359.96914 * 18 17 16 37 37 H 1.08001 * 119.94141 * 180.24599 * 19 18 17 38 38 H 1.07996 * 119.87570 * 179.70325 * 20 19 18 39 39 H 1.07997 * 119.93489 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.05816 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.94131 * 180.29633 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6470 -7.3604 0.0018 14 6 1.2872 -7.9481 -1.1980 15 6 0.5660 -9.1246 -1.2047 16 6 0.1992 -9.7212 0.0000 17 6 -0.5767 -10.9859 -0.0011 18 6 -1.7319 -11.0969 -0.7724 19 6 -2.4466 -12.2776 -0.7741 20 6 -2.0244 -13.3457 -0.0032 21 6 -0.8816 -13.2391 0.7687 22 6 -0.1557 -12.0652 0.7731 23 6 0.5633 -9.1246 1.2064 24 17 0.1115 -9.8608 2.7123 25 6 1.2900 -7.9493 1.2007 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8744 -4.9841 0.7828 32 1 3.0631 -6.0353 -0.8882 33 1 3.0630 -6.0345 0.8918 34 1 1.5714 -7.4849 -2.1313 35 1 0.2863 -9.5822 -2.1421 36 1 -2.0651 -10.2619 -1.3710 37 1 -3.3398 -12.3661 -1.3747 38 1 -2.5894 -14.2661 -0.0038 39 1 -0.5567 -14.0760 1.3691 40 1 0.7367 -11.9832 1.3759 41 1 1.5769 -7.4884 2.1344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308369131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:09 Heat of formation + Delta-G solvation = 13.103165 kcal Electronic energy + Delta-G solvation = -21766.941868 eV Core-core repulsion = 18442.777892 eV Total energy + Delta-G solvation = -3324.163976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.94580 -39.51534 -37.74480 -37.19031 -35.20224 -33.84388 -32.02773 -31.70446 -31.59706 -29.81351 -26.97495 -25.22392 -24.15309 -23.22654 -22.92600 -22.45586 -21.66117 -18.53033 -18.40874 -17.36792 -16.96304 -16.67701 -16.47033 -16.15319 -15.75700 -15.52931 -15.49771 -14.92917 -14.70430 -14.50052 -14.27497 -14.03497 -13.92799 -13.71746 -13.45761 -13.02959 -12.85989 -12.70236 -12.49432 -12.40764 -12.36507 -12.21593 -11.92358 -11.90178 -11.61394 -11.38829 -11.25714 -10.56326 -10.28647 -9.82151 -9.81711 -9.35996 -9.15145 -8.19941 -6.31496 -0.20189 0.21164 0.51529 0.64646 1.10120 1.41011 1.42564 1.53470 2.40261 2.51036 2.90913 3.13555 3.42905 3.54348 3.79069 3.82886 4.05229 4.12499 4.21966 4.26353 4.29404 4.40988 4.51126 4.55491 4.62736 4.68072 4.69039 4.75104 4.89129 4.95931 5.07500 5.12165 5.18511 5.28788 5.44669 5.52644 5.55738 5.62193 5.64700 5.67187 5.76494 5.79705 6.08947 6.11540 6.25016 6.47274 6.86143 7.37833 8.92145 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.002143 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.052463 B =13065.667461 C =13284.147392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.692 5.692 12 C 0.098 3.902 13 C -0.069 4.069 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.048 4.048 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.036 4.036 24 Cl -0.066 7.066 25 C -0.110 4.110 26 H 0.264 0.736 27 H -0.006 1.006 28 H -0.011 1.011 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.337 0.663 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -29.217 -0.024 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.323 5.323 12 C -0.030 4.030 13 C -0.070 4.070 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.049 4.049 17 C -0.065 4.065 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.125 4.125 23 C -0.063 4.063 24 Cl -0.037 7.037 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.008 0.992 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.138 0.862 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.663 -29.173 -0.564 29.186 hybrid contribution 0.412 1.172 1.232 1.750 sum -0.251 -28.000 0.668 28.009 Atomic orbital electron populations 1.70114 1.07855 1.27782 1.51464 1.26001 0.95783 1.03466 0.94702 0.85408 0.78610 0.78260 0.78517 1.19718 1.20849 1.18645 1.21621 0.93609 0.92167 1.50795 0.91938 1.18926 0.94356 0.92373 0.95014 1.21811 0.95570 0.87927 0.99169 1.60574 1.20041 1.01496 1.50156 1.20930 0.93238 0.86641 1.02175 1.19848 0.98585 0.95761 0.92797 1.21304 0.96802 0.94710 0.98400 1.21386 0.97487 0.95147 0.97301 1.18809 0.99056 0.95187 0.91808 1.18744 0.95975 0.92431 0.99392 1.21399 0.94255 0.98794 0.98646 1.21389 1.00459 0.92791 0.99718 1.21563 0.96508 0.99581 0.95927 1.21362 0.95698 0.97706 0.99765 1.21352 1.00203 0.92996 0.97913 1.20999 1.02199 0.96239 0.86848 1.98353 1.91502 1.82332 1.31511 1.20994 0.98427 0.94330 0.99136 0.92776 0.98733 0.99236 0.96006 0.91765 0.84548 0.89225 0.93725 0.83821 0.83013 0.85310 0.83810 0.83649 0.84066 0.86188 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.64 5.23 29.85 0.16 1.80 16 10 C 0.08 3.45 5.62 86.30 0.49 3.93 16 11 N -0.69 -23.99 6.49 -517.92 -3.36 -27.35 16 12 C 0.10 2.62 5.81 85.55 0.50 3.12 16 13 C -0.07 -1.69 5.40 -19.83 -0.11 -1.79 16 14 C -0.09 -2.06 9.68 22.24 0.22 -1.85 16 15 C -0.10 -1.93 9.52 22.48 0.21 -1.71 16 16 C -0.05 -1.05 5.48 -20.03 -0.11 -1.16 16 17 C -0.07 -1.32 5.11 -20.05 -0.10 -1.42 16 18 C -0.11 -2.01 9.52 22.48 0.21 -1.80 16 19 C -0.13 -1.81 10.03 22.24 0.22 -1.59 16 20 C -0.12 -1.56 10.04 22.31 0.22 -1.34 16 21 C -0.13 -1.90 10.03 22.24 0.22 -1.67 16 22 C -0.11 -1.98 8.18 22.48 0.18 -1.80 16 23 C -0.04 -0.86 6.28 22.54 0.14 -0.71 16 24 Cl -0.07 -1.47 25.99 -2.72 -0.07 -1.54 16 25 C -0.11 -2.64 9.47 22.26 0.21 -2.42 16 26 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 27 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.34 11.77 8.72 -89.69 -0.78 10.99 16 32 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 33 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.15 2.37 8.05 -2.91 -0.02 2.35 16 36 H 0.13 2.09 8.05 -2.91 -0.02 2.07 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.12 2.21 7.16 -2.91 -0.02 2.19 16 41 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -65.96 363.64 2.49 -63.47 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.24 Total: 16.90 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 3.36 Total: -40.80 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -3.08 Total: -84.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.54 kcal Total: -65.96 2.49 -63.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308369131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.572 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds