Wall clock time and date at job start Tue Mar 31 2020 11:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00045 * 2 1 4 4 O 1.21671 * 120.00194 * 0.02562 * 3 2 1 5 5 C 1.46953 * 119.99950 * 180.02562 * 3 2 1 6 6 N 1.34558 * 125.96656 * 0.02587 * 5 3 2 7 7 N 1.28663 * 109.74334 * 179.97438 * 6 5 3 8 8 N 1.40149 * 108.87721 * 359.97438 * 7 6 5 9 9 H 0.97002 * 126.55276 * 180.02562 * 8 7 6 10 10 C 1.35358 * 106.88937 * 359.97438 * 8 7 6 11 11 N 1.38396 * 126.78924 * 179.97438 * 10 8 7 12 12 C 1.34778 * 119.99962 * 359.97358 * 11 10 8 13 13 O 1.21548 * 119.99701 * 0.02562 * 12 11 10 14 14 C 1.47832 * 120.00129 * 180.02562 * 12 11 10 15 15 C 1.39942 * 120.02548 * 359.72400 * 14 12 11 16 16 C 1.38324 * 120.35368 * 179.71708 * 15 14 12 17 17 C 1.37758 * 120.41476 * 0.56192 * 16 15 14 18 18 C 1.40755 * 120.04477 * 359.72190 * 17 16 15 19 19 C 1.41437 * 120.17681 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00054 * 24.43499 * 19 18 17 21 21 C 1.39939 * 119.99999 * 204.43085 * 19 18 17 22 22 N 1.30827 * 119.99635 * 17.89118 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 197.89232 * 21 19 18 24 24 H 1.48497 * 109.47451 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46990 * 120.00317 * 23 21 19 26 26 H 1.48507 * 109.46979 * 239.99962 * 23 21 19 27 27 C 1.39021 * 120.02512 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.46566 * 299.99674 * 1 2 3 29 29 H 1.08990 * 109.47295 * 59.99667 * 1 2 3 30 30 H 1.08997 * 109.47454 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99931 * 180.02562 * 2 1 3 32 32 H 0.97002 * 120.00272 * 179.97438 * 11 10 8 33 33 H 1.07994 * 119.82427 * 359.97438 * 15 14 12 34 34 H 1.08001 * 119.79485 * 180.28257 * 16 15 14 35 35 H 1.07999 * 119.97948 * 179.74177 * 17 16 15 36 36 H 0.97003 * 119.99604 * 179.97438 * 22 21 19 37 37 H 1.07994 * 120.20820 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5306 2.2209 0.0005 5 6 3.6084 1.1671 -0.0006 6 7 4.3987 0.0781 -0.0016 7 7 5.6341 0.4375 -0.0024 8 7 5.6990 1.8375 -0.0025 9 1 6.5042 2.3785 -0.0033 10 6 4.4234 2.2903 -0.0022 11 7 4.0131 3.6121 -0.0017 12 6 4.9281 4.6017 -0.0008 13 8 6.1136 4.3333 -0.0010 14 6 4.4899 6.0136 0.0003 15 6 3.1252 6.3232 -0.0054 16 6 2.7075 7.6419 0.0015 17 6 3.6295 8.6654 0.0024 18 6 5.0065 8.3736 0.0022 19 6 5.9555 9.4223 0.0037 20 1 5.6865 10.3935 0.3918 21 6 7.2432 9.2013 -0.4977 22 7 7.4758 8.1736 -1.2731 23 14 8.6299 10.3738 -0.0596 24 1 8.1098 11.4473 0.8247 25 1 9.7041 9.6287 0.6447 26 1 9.1782 10.9776 -1.3007 27 6 5.4332 7.0347 0.0007 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.0671 3.8263 -0.0020 33 1 2.3941 5.5283 -0.0110 34 1 1.6520 7.8705 0.0016 35 1 3.2957 9.6925 0.0036 36 1 8.3683 8.0207 -1.6210 37 1 6.4875 6.8006 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436644488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:17 Heat of formation + Delta-G solvation = 36.753298 kcal Electronic energy + Delta-G solvation = -25087.332366 eV Core-core repulsion = 21252.237180 eV Total energy + Delta-G solvation = -3835.095186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33916 -39.85504 -39.35415 -37.38812 -35.42707 -34.59573 -33.92539 -32.87523 -30.91567 -29.81828 -29.63443 -27.08773 -25.55161 -24.18173 -23.31580 -22.37435 -21.23691 -20.70610 -20.12016 -18.82996 -18.03382 -17.35613 -16.46063 -16.28698 -16.15251 -15.60614 -15.35366 -15.11952 -14.85857 -14.51352 -14.36577 -14.07727 -13.46766 -13.03712 -13.01407 -12.73964 -12.48537 -12.36287 -11.89747 -11.65329 -11.56095 -11.33187 -11.23999 -10.94621 -10.66634 -10.53507 -10.39259 -10.29819 -9.90151 -9.67105 -9.39189 -9.34399 -8.56029 -7.90694 -7.73205 -6.98453 -4.59097 0.99249 1.58980 1.90739 2.07018 2.62751 2.97868 2.99967 3.02266 3.03768 3.16142 3.17703 3.43741 3.78961 4.22121 4.40908 4.50796 4.85082 5.01625 5.13565 5.32388 5.37627 5.50399 5.62924 5.85660 5.95154 6.09384 6.19850 6.51032 6.70827 6.78359 6.97063 7.00447 7.13551 7.17444 7.25653 7.47798 7.57906 7.74722 7.90141 7.94079 8.05069 8.09500 8.29094 8.60679 8.63123 9.96419 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.003332 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.652083 B = 8402.280629 C = 9670.588535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.721 5.721 3 C 0.614 3.386 4 O -0.546 6.546 5 C -0.160 4.160 6 N -0.185 5.185 7 N -0.065 5.065 8 N -0.459 5.459 9 H 0.461 0.539 10 C 0.388 3.612 11 N -0.630 5.630 12 C 0.571 3.429 13 O -0.531 6.531 14 C -0.134 4.134 15 C -0.214 4.214 16 C -0.092 4.092 17 C -0.202 4.202 18 C 0.096 3.904 19 C -0.455 4.455 20 H 0.085 0.915 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.912 3.088 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.082 4.082 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.410 0.590 32 H 0.444 0.556 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.286 0.714 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -11.574 1.716 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 C 0.400 3.600 4 O -0.423 6.423 5 C -0.304 4.304 6 N -0.061 5.061 7 N -0.048 5.048 8 N -0.185 5.185 9 H 0.316 0.684 10 C 0.149 3.851 11 N -0.283 5.283 12 C 0.366 3.634 13 O -0.406 6.406 14 C -0.138 4.138 15 C -0.234 4.234 16 C -0.110 4.110 17 C -0.222 4.222 18 C 0.094 3.906 19 C -0.483 4.483 20 H 0.103 0.897 21 C -0.147 4.147 22 N -0.407 5.407 23 Si 0.736 3.264 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.102 4.102 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.290 0.710 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.344 -12.325 1.565 13.950 hybrid contribution 0.411 1.367 0.014 1.428 sum -5.933 -10.959 1.579 12.561 Atomic orbital electron populations 1.21579 0.78914 1.02367 1.02626 1.45436 1.07736 1.08583 1.75434 1.16489 0.83829 0.84117 0.75562 1.90770 1.68665 1.31105 1.51723 1.20859 0.94904 0.87441 1.27178 1.74437 0.97832 1.25049 1.08741 1.81828 1.11562 0.86422 1.25003 1.48477 1.07304 1.08247 1.54520 0.68395 1.18886 0.85999 0.86738 0.93475 1.43566 1.14064 1.00143 1.70518 1.19472 0.84392 0.86608 0.72911 1.90522 1.17156 1.83772 1.49188 1.19088 0.95036 0.88549 1.11099 1.20424 0.92873 0.96209 1.13934 1.20470 0.97770 0.92602 1.00202 1.21194 0.93183 0.97372 1.10459 1.17592 0.91750 0.92227 0.89064 1.19657 0.95016 0.98287 1.35357 0.89729 1.25998 1.00231 0.95949 0.92514 1.69775 1.23675 1.26004 1.21286 0.86192 0.80169 0.80636 0.79440 1.18208 1.19482 1.19789 1.21661 0.99081 0.91099 0.98380 0.91945 0.91932 0.90491 0.75500 0.71031 0.88524 0.88269 0.88164 0.90324 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.72 -7.23 5.71 -68.33 -0.39 -7.62 16 3 C 0.61 8.46 7.80 -12.73 -0.10 8.36 16 4 O -0.55 -8.66 15.09 5.21 0.08 -8.58 16 5 C -0.16 -2.38 7.06 -82.95 -0.59 -2.97 16 6 N -0.19 -2.68 12.03 33.15 0.40 -2.28 16 7 N -0.06 -0.99 13.85 60.35 0.84 -0.16 16 8 N -0.46 -7.22 7.04 31.47 0.22 -6.99 16 9 H 0.46 7.20 6.55 -182.56 -1.20 6.01 16 10 C 0.39 6.29 7.76 -153.15 -1.19 5.10 16 11 N -0.63 -10.67 5.31 -11.93 -0.06 -10.74 16 12 C 0.57 11.36 7.73 -12.33 -0.10 11.27 16 13 O -0.53 -11.18 13.92 5.32 0.07 -11.10 16 14 C -0.13 -2.94 5.87 -105.04 -0.62 -3.55 16 15 C -0.21 -4.29 9.55 -38.91 -0.37 -4.66 16 16 C -0.09 -1.85 10.01 -39.73 -0.40 -2.25 16 17 C -0.20 -4.48 9.78 -38.81 -0.38 -4.86 16 18 C 0.10 2.38 5.57 -106.87 -0.60 1.78 16 19 C -0.45 -11.20 9.05 -37.73 -0.34 -11.54 16 20 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 21 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 22 N -0.78 -19.40 10.96 55.55 0.61 -18.79 16 23 Si 0.91 17.74 29.60 -169.99 -5.03 12.71 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 C -0.08 -2.02 8.24 -38.43 -0.32 -2.33 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.41 3.40 8.51 -40.82 -0.35 3.06 16 32 H 0.44 7.20 4.86 -40.82 -0.20 7.00 16 33 H 0.10 1.68 6.38 -52.49 -0.33 1.35 16 34 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 36 H 0.29 6.48 8.30 -40.82 -0.34 6.14 16 37 H 0.14 3.58 5.74 -52.49 -0.30 3.28 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -27.36 327.86 -6.80 -34.16 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -4.04 Total: 17.17 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.44 Total: -2.72 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 1.61 Total: -46.58 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.15 Total: -19.68 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.36 -6.80 -34.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436644488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.916 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds