Wall clock time and date at job start Tue Mar 31 2020 11:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35949 * 117.00398 * 2 1 4 4 C 1.38556 * 120.02293 * 0.02562 * 3 2 1 5 5 C 1.38824 * 119.89666 * 179.97438 * 4 3 2 6 6 N 1.39895 * 120.02039 * 180.02562 * 5 4 3 7 7 C 1.34787 * 119.99765 * 144.58472 * 6 5 4 8 8 O 1.21629 * 119.99581 * 5.23730 * 7 6 5 9 9 C 1.47382 * 120.00032 * 185.23745 * 7 6 5 10 10 C 1.39258 * 120.28622 * 354.28866 * 9 7 6 11 11 C 1.38199 * 120.08978 * 180.29670 * 10 9 7 12 12 C 1.38847 * 120.67924 * 359.69847 * 11 10 9 13 13 C 1.37584 * 120.57584 * 0.02562 * 12 11 10 14 14 C 1.40716 * 119.88131 * 359.97438 * 13 12 11 15 15 C 1.40875 * 120.32390 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99591 * 147.08332 * 15 14 13 17 17 C 1.40269 * 120.00379 * 327.07898 * 15 14 13 18 18 N 1.30623 * 120.00151 * 338.79092 * 17 15 14 19 19 Si 1.86803 * 119.99874 * 158.78771 * 17 15 14 20 20 H 1.48504 * 109.46835 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47292 * 299.99997 * 19 17 15 22 22 H 1.48497 * 109.47082 * 60.00372 * 19 17 15 23 23 C 1.38914 * 119.94823 * 0.27993 * 5 4 3 24 24 C 1.38158 * 120.04847 * 359.46478 * 23 5 4 25 25 C 1.38355 * 120.10486 * 0.51422 * 24 23 5 26 26 F 1.35100 * 119.97737 * 179.73894 * 25 24 23 27 27 H 1.09003 * 109.46617 * 299.99646 * 1 2 3 28 28 H 1.09002 * 109.47104 * 59.99138 * 1 2 3 29 29 H 1.08996 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.05272 * 0.02562 * 4 3 2 31 31 H 0.96994 * 120.00740 * 324.58098 * 6 5 4 32 32 H 1.08000 * 119.95303 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.65967 * 179.71731 * 11 10 9 34 34 H 1.07997 * 119.70935 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.05857 * 180.02562 * 13 12 11 36 36 H 0.97000 * 120.00309 * 354.28844 * 18 17 15 37 37 H 1.07993 * 119.97119 * 179.72583 * 23 5 4 38 38 H 1.08001 * 119.94766 * 180.25629 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2922 2.3737 0.0005 5 6 1.9252 3.6092 0.0011 6 7 1.1664 4.7844 0.0022 7 6 1.6004 5.8661 0.6791 8 8 2.6949 5.8529 1.2094 9 6 0.7486 7.0649 0.7768 10 6 -0.4522 7.1323 0.0749 11 6 -1.2448 8.2609 0.1646 12 6 -0.8608 9.3352 0.9560 13 6 0.3172 9.2958 1.6657 14 6 1.1425 8.1585 1.5918 15 6 2.3510 8.1085 2.3141 16 1 2.7086 7.1668 2.7037 17 6 3.0898 9.2817 2.5273 18 7 2.9151 10.3144 1.7468 19 14 4.3235 9.3671 3.9274 20 1 4.9676 10.7051 3.9385 21 1 3.6237 9.1444 5.2180 22 1 5.3594 8.3200 3.7388 23 6 3.3127 3.6775 -0.0048 24 6 4.0625 2.5170 0.0000 25 6 3.4338 1.2846 -0.0001 26 9 4.1695 0.1515 -0.0007 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2136 2.3186 0.0014 31 1 0.3280 4.8210 -0.4842 32 1 -0.7624 6.3033 -0.5438 33 1 -2.1725 8.3076 -0.3863 34 1 -1.4924 10.2092 1.0150 35 1 0.6075 10.1360 2.2790 36 1 2.3372 10.2438 0.9709 37 1 3.8055 4.6384 -0.0089 38 1 5.1411 2.5721 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638704422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:07 Heat of formation + Delta-G solvation = -71.380978 kcal Electronic energy + Delta-G solvation = -25186.752232 eV Core-core repulsion = 21294.755279 eV Total energy + Delta-G solvation = -3891.996953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.60380 -40.37504 -39.28768 -37.74339 -36.62735 -34.41566 -33.75510 -30.55199 -30.29895 -29.61328 -28.86958 -27.18448 -25.40544 -23.31454 -22.66351 -21.89319 -21.02488 -19.77901 -18.59904 -18.04059 -17.19382 -17.13432 -16.28679 -16.10663 -15.70020 -15.00166 -14.91087 -14.61197 -14.42482 -14.32542 -14.22167 -13.96731 -13.61544 -12.92670 -12.82914 -12.65858 -12.43279 -12.30944 -11.99989 -11.82205 -11.37891 -11.26873 -11.19256 -11.02404 -10.87207 -10.44375 -10.28817 -9.79866 -9.73724 -9.18688 -8.73824 -8.55987 -7.97253 -7.78517 -7.67249 -7.29707 -4.61941 1.15933 1.36402 2.07849 2.61990 3.04405 3.13942 3.22968 3.33950 3.49899 3.56714 3.93046 3.94882 4.34761 4.48142 4.76597 4.87807 4.97716 5.18793 5.24740 5.31345 5.31835 5.47096 5.57537 5.70265 5.87710 5.95085 6.02389 6.28063 6.41921 6.47953 6.57293 6.57873 6.84717 6.96337 7.12691 7.29383 7.34528 7.43289 7.58306 7.73129 7.88359 8.03354 8.08563 8.56428 8.68694 9.01579 9.88141 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003868 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.391765 B = 7237.294606 C = 8746.398839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.112 3.888 4 C -0.222 4.222 5 C 0.201 3.799 6 N -0.688 5.688 7 C 0.562 3.438 8 O -0.514 6.514 9 C -0.273 4.273 10 C -0.041 4.041 11 C -0.258 4.258 12 C -0.074 4.074 13 C -0.198 4.198 14 C 0.120 3.880 15 C -0.460 4.460 16 H 0.107 0.893 17 C 0.033 3.967 18 N -0.783 5.783 19 Si 1.068 2.932 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.132 4.132 24 C -0.095 4.095 25 C 0.036 3.964 26 F -0.140 7.140 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.404 0.596 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.300 0.700 37 H 0.155 0.845 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -11.754 -3.737 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.066 3.934 4 C -0.244 4.244 5 C 0.104 3.896 6 N -0.333 5.333 7 C 0.358 3.642 8 O -0.391 6.391 9 C -0.278 4.278 10 C -0.060 4.060 11 C -0.277 4.277 12 C -0.093 4.093 13 C -0.217 4.217 14 C 0.116 3.884 15 C -0.487 4.487 16 H 0.124 0.876 17 C -0.190 4.190 18 N -0.405 5.405 19 Si 0.891 3.109 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.153 4.153 24 C -0.114 4.114 25 C 0.016 3.984 26 F -0.118 7.118 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.241 0.759 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.172 0.828 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.116 -10.832 -2.584 11.335 hybrid contribution -1.960 -1.044 -1.179 2.514 sum -4.076 -11.875 -3.763 13.107 Atomic orbital electron populations 1.23086 0.78198 1.03949 1.01612 1.86115 1.21530 1.25863 1.88945 1.18606 0.90533 0.84882 0.99413 1.20792 1.00136 0.90382 1.13083 1.17575 0.91025 0.85610 0.95419 1.43833 1.25262 1.11010 1.53244 1.18573 0.86601 0.82111 0.76879 1.90691 1.21202 1.81084 1.46146 1.19167 0.99477 0.98370 1.10756 1.20697 0.93342 0.96118 0.95855 1.20246 1.01972 0.96312 1.09173 1.20766 0.95899 0.96709 0.95908 1.21267 0.95701 1.00242 1.04451 1.17448 0.92981 0.89710 0.88288 1.21237 1.03728 0.98593 1.25093 0.87554 1.27314 0.99808 0.90857 1.01025 1.70391 1.28112 1.31456 1.10547 0.83585 0.75557 0.77400 0.74384 1.19783 1.19835 1.19589 1.21266 0.92227 0.99546 1.02243 1.20917 1.00948 0.89680 0.99893 1.16880 0.85794 0.82887 1.12859 1.91454 1.76559 1.49073 1.94748 0.92405 0.92512 0.88166 0.84514 0.75947 0.89145 0.88735 0.88714 0.87395 0.88675 0.82787 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.10 10.36 -19.58 -0.20 -4.30 16 3 C 0.11 1.62 6.69 -39.20 -0.26 1.35 16 4 C -0.22 -3.06 8.95 -39.25 -0.35 -3.41 16 5 C 0.20 3.24 6.29 -83.71 -0.53 2.72 16 6 N -0.69 -11.62 5.28 -10.84 -0.06 -11.68 16 7 C 0.56 12.12 7.56 -12.53 -0.09 12.02 16 8 O -0.51 -12.50 11.03 5.25 0.06 -12.44 16 9 C -0.27 -6.20 5.92 -104.37 -0.62 -6.82 16 10 C -0.04 -0.81 9.53 -39.22 -0.37 -1.18 16 11 C -0.26 -5.05 10.03 -39.37 -0.39 -5.45 16 12 C -0.07 -1.54 10.01 -39.59 -0.40 -1.94 16 13 C -0.20 -4.66 7.92 -38.88 -0.31 -4.97 16 14 C 0.12 3.02 5.18 -106.54 -0.55 2.47 16 15 C -0.46 -11.96 7.66 -37.82 -0.29 -12.25 16 16 H 0.11 2.88 5.94 -52.48 -0.31 2.57 16 17 C 0.03 0.81 5.00 -17.30 -0.09 0.73 16 18 N -0.78 -19.95 12.53 55.56 0.70 -19.26 16 19 Si 1.07 21.46 29.99 -169.99 -5.10 16.37 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.13 -2.21 8.69 -39.36 -0.34 -2.55 16 24 C -0.09 -1.40 10.01 -39.57 -0.40 -1.79 16 25 C 0.04 0.55 7.31 -39.28 -0.29 0.27 16 26 F -0.14 -2.16 17.11 2.25 0.04 -2.12 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 31 H 0.40 5.62 6.87 -40.82 -0.28 5.34 16 32 H 0.09 1.42 6.42 -52.49 -0.34 1.08 16 33 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 2.60 6.92 -52.49 -0.36 2.24 16 36 H 0.30 7.80 6.69 -40.82 -0.27 7.53 16 37 H 0.15 2.87 6.24 -52.49 -0.33 2.54 16 38 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -28.84 327.18 -7.43 -36.27 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.51 Total: 11.81 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -4.29 Total: -19.57 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.64 Total: -30.93 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.14 Total: -16.74 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.10 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.84 -7.43 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638704422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.114 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds