Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99729 * 2 1 4 4 C 1.50702 * 109.46989 * 66.04443 * 3 2 1 5 5 N 1.27930 * 124.23574 * 89.70074 * 4 3 2 6 6 C 1.34664 * 117.84702 * 179.81113 * 5 4 3 7 7 C 1.40964 * 129.69133 * 180.18153 * 6 5 4 8 8 C 1.36184 * 120.42587 * 180.33823 * 7 6 5 9 9 C 1.38786 * 120.77706 * 359.95403 * 8 7 6 10 10 C 1.37656 * 120.06802 * 0.02562 * 9 8 7 11 11 C 1.39330 * 119.95359 * 0.02562 * 10 9 8 12 12 S 1.70645 * 124.23911 * 269.99713 * 4 3 2 13 13 C 1.46900 * 110.99687 * 236.04559 * 2 1 3 14 14 C 1.53000 * 109.46494 * 199.52625 * 13 2 1 15 15 H 1.08996 * 109.47555 * 304.98993 * 14 13 2 16 16 C 1.47200 * 109.47130 * 64.99483 * 14 13 2 17 17 N 3.66481 * 124.23345 * 157.25378 * 2 1 3 18 18 C 1.53002 * 109.46915 * 184.99321 * 14 13 2 19 19 C 1.50702 * 109.47226 * 175.00259 * 18 14 13 20 20 H 1.07999 * 119.99798 * 359.97438 * 19 18 14 21 21 C 1.37877 * 120.00305 * 179.72507 * 19 18 14 22 22 N 1.31507 * 120.00323 * 180.27574 * 21 19 18 23 23 Si 1.86806 * 119.99798 * 0.27466 * 21 19 18 24 24 H 1.48499 * 109.47176 * 89.99959 * 23 21 19 25 25 H 1.48499 * 109.46926 * 210.00180 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.99924 * 23 21 19 27 27 H 1.09004 * 109.46877 * 187.59764 * 1 2 3 28 28 H 1.08997 * 109.47622 * 307.59636 * 1 2 3 29 29 H 1.09000 * 109.47270 * 67.60573 * 1 2 3 30 30 H 1.08999 * 109.47193 * 186.04229 * 3 2 1 31 31 H 1.09006 * 109.47273 * 306.04568 * 3 2 1 32 32 H 1.07997 * 119.78676 * 0.30524 * 7 6 5 33 33 H 1.07995 * 119.60899 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.96549 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.02306 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.46850 * 79.53493 * 13 2 1 37 37 H 1.08988 * 109.47575 * 319.52595 * 13 2 1 38 38 H 1.08995 * 109.47261 * 55.00390 * 18 14 13 39 39 H 1.08999 * 109.47089 * 295.00145 * 18 14 13 40 40 H 0.96998 * 120.00231 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2985 5 7 2.3653 2.0189 2.3497 6 6 1.9212 2.6719 3.4405 7 6 2.5135 2.8063 4.7126 8 6 1.8873 3.5134 5.6936 9 6 0.6581 4.1146 5.4616 10 6 0.0562 4.0003 4.2289 11 6 0.6816 3.2799 3.2134 12 16 0.2047 2.9396 1.5529 13 6 1.9954 -0.7660 -1.1376 14 6 3.4474 -1.1597 -0.8590 15 1 4.0286 -0.2665 -0.6305 16 6 3.4944 -2.0823 0.2870 17 7 3.5307 -2.7942 1.1715 18 6 4.0346 -1.8485 -2.0926 19 6 5.4981 -2.1260 -1.8640 20 1 5.9630 -1.8395 -0.9322 21 6 6.2425 -2.7505 -2.8423 22 7 7.5183 -2.9976 -2.6406 23 14 5.4386 -3.2455 -4.4542 24 1 5.5534 -2.1300 -5.4277 25 1 6.1187 -4.4487 -4.9975 26 1 4.0047 -3.5515 -4.2188 27 1 -0.3633 -1.0187 0.1359 28 1 -0.3634 0.6269 0.8142 29 1 -0.3634 0.3915 -0.9502 30 1 3.0796 1.3445 -0.1082 31 1 1.5610 1.9274 -0.8310 32 1 3.4698 2.3452 4.9105 33 1 2.3528 3.6076 6.6635 34 1 0.1733 4.6726 6.2490 35 1 -0.9005 4.4681 4.0492 36 1 1.9513 -0.1546 -2.0388 37 1 1.3958 -1.6652 -1.2788 38 1 3.9193 -1.1994 -2.9606 39 1 3.5099 -2.7875 -2.2688 40 1 8.0420 -3.4366 -3.3290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025233577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = 87.905762 kcal Electronic energy + Delta-G solvation = -22541.799484 eV Core-core repulsion = 19255.215650 eV Total energy + Delta-G solvation = -3286.583834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56534 -38.51994 -37.02331 -35.63790 -33.60982 -31.93989 -31.38291 -30.64561 -27.96000 -27.89954 -25.11108 -24.05082 -22.85296 -21.94030 -21.42015 -20.54718 -18.75459 -17.05516 -16.92921 -16.77530 -15.99981 -15.59916 -15.51848 -15.06986 -14.74447 -14.34993 -14.18301 -14.08659 -13.34124 -13.18180 -13.00195 -12.73390 -12.45409 -12.38972 -12.18973 -12.09991 -11.90687 -11.84312 -11.67373 -11.32013 -11.18841 -11.11164 -10.71664 -10.37949 -10.32101 -9.92440 -9.79128 -9.68910 -9.30875 -8.89356 -8.60560 -8.42712 -8.32516 -6.08863 -4.09501 0.18522 0.88023 1.02291 1.50500 2.13929 3.26039 3.35132 3.35688 3.43028 3.62677 3.74761 3.85141 3.97259 4.34572 4.39138 4.59497 4.73029 4.79751 4.91641 4.96392 5.06516 5.14841 5.20559 5.25710 5.31783 5.41983 5.57355 5.62206 5.65661 5.80459 5.81516 5.86279 5.95129 6.09649 6.17136 6.29359 6.42387 6.85426 6.90420 6.92298 7.13842 7.51801 7.65009 8.42979 8.61773 8.95813 9.50697 11.04335 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002924 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.140033 B = 9574.104558 C =10181.245817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.118 3.882 4 C 0.113 3.887 5 N -0.445 5.445 6 C 0.086 3.914 7 C -0.061 4.061 8 C -0.109 4.109 9 C -0.105 4.105 10 C -0.074 4.074 11 C -0.184 4.184 12 S 0.086 5.914 13 C 0.061 3.939 14 C 0.021 3.979 15 H 0.106 0.894 16 C 0.254 3.746 17 N -0.471 5.471 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.264 1.264 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.025 0.975 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 17.529 9.034 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.013 4.013 4 C -0.173 4.173 5 N -0.158 5.158 6 C -0.035 4.035 7 C -0.081 4.081 8 C -0.130 4.130 9 C -0.126 4.126 10 C -0.096 4.096 11 C -0.303 4.303 12 S 0.343 5.657 13 C -0.067 4.067 14 C -0.001 4.001 15 H 0.123 0.877 16 C -0.063 4.063 17 N -0.147 5.147 18 C -0.044 4.044 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.188 1.188 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.733 16.059 10.003 26.625 hybrid contribution -0.026 0.346 -1.086 1.140 sum -18.759 16.405 8.917 26.468 Atomic orbital electron populations 1.22602 0.87126 1.03136 1.00564 1.61878 1.07952 1.11456 1.44841 1.20898 1.03468 0.88413 0.88506 1.26611 0.93365 0.98889 0.98419 1.66159 1.33060 1.18208 0.98369 1.19265 0.92224 0.97698 0.94279 1.20487 1.00184 0.98011 0.89466 1.20739 0.95505 0.97525 0.99273 1.21129 0.95578 0.99588 0.96347 1.20324 0.99646 0.98088 0.91560 1.23919 1.00237 1.07145 0.98973 1.83860 1.24552 1.51870 1.05428 1.22323 0.95584 0.98068 0.90707 1.18968 0.95098 0.95668 0.90358 0.87671 1.28611 0.91544 0.93043 0.93117 1.80989 1.09981 1.11381 1.12386 1.19647 0.97541 0.96006 0.91227 1.21030 0.91856 1.39674 1.03914 0.90720 1.24993 0.94663 0.95013 0.98452 1.69904 1.06874 1.42183 1.34533 0.86827 0.80195 0.78492 0.84094 1.20069 1.21343 1.18841 0.90689 0.91465 0.94917 0.86496 0.91667 0.84597 0.84774 0.84850 0.85316 0.92057 0.89625 0.94926 0.95635 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.33 60.07 0.56 0.71 16 2 N -0.54 -6.97 4.38 -244.37 -1.07 -8.04 16 3 C 0.12 1.40 5.35 -4.98 -0.03 1.37 16 4 C 0.11 1.47 6.11 -13.90 -0.08 1.38 16 5 N -0.45 -6.79 10.57 -9.08 -0.10 -6.89 16 6 C 0.09 1.16 7.00 -84.96 -0.59 0.57 16 7 C -0.06 -0.68 10.05 -39.29 -0.39 -1.08 16 8 C -0.11 -0.92 9.94 -40.12 -0.40 -1.32 16 9 C -0.10 -0.80 10.04 -39.59 -0.40 -1.19 16 10 C -0.07 -0.66 10.07 -39.39 -0.40 -1.05 16 11 C -0.18 -2.13 6.56 -38.55 -0.25 -2.39 16 12 S 0.09 0.90 21.34 -107.50 -2.29 -1.39 16 13 C 0.06 0.82 4.36 -3.82 -0.02 0.80 16 14 C 0.02 0.38 2.26 -93.41 -0.21 0.16 16 15 H 0.11 1.81 6.65 -51.93 -0.35 1.47 16 16 C 0.25 5.42 13.67 -20.76 -0.28 5.14 16 17 N -0.47 -11.12 18.54 42.15 0.78 -10.34 16 18 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 19 C -0.53 -14.21 9.15 -34.44 -0.32 -14.52 16 20 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 23 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 27 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.71 5.55 -51.93 -0.29 0.42 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.12 1.46 6.56 -51.93 -0.34 1.12 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 37 H 0.09 1.11 7.93 -51.94 -0.41 0.70 16 38 H 0.03 0.63 7.58 -51.93 -0.39 0.23 16 39 H 0.03 0.55 7.19 -51.93 -0.37 0.18 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -34.24 352.09 -9.38 -43.62 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.10 Total: -1.99 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.01 Total: -9.73 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.39 Total: -51.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.29 Total: -1.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.24 -9.38 -43.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025233577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.531 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds