Wall clock time and date at job start Tue Mar 31 2020 11:27:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46897 * 110.99729 * 2 1
4 4 C 1.50702 * 109.46989 * 66.04443 * 3 2 1
5 5 N 1.27930 * 124.23574 * 89.70074 * 4 3 2
6 6 C 1.34664 * 117.84702 * 179.81113 * 5 4 3
7 7 C 1.40964 * 129.69133 * 180.18153 * 6 5 4
8 8 C 1.36184 * 120.42587 * 180.33823 * 7 6 5
9 9 C 1.38786 * 120.77706 * 359.95403 * 8 7 6
10 10 C 1.37656 * 120.06802 * 0.02562 * 9 8 7
11 11 C 1.39330 * 119.95359 * 0.02562 * 10 9 8
12 12 S 1.70645 * 124.23911 * 269.99713 * 4 3 2
13 13 C 1.46900 * 110.99687 * 236.04559 * 2 1 3
14 14 C 1.53000 * 109.46494 * 199.52625 * 13 2 1
15 15 H 1.08996 * 109.47555 * 304.98993 * 14 13 2
16 16 C 1.47200 * 109.47130 * 64.99483 * 14 13 2
17 17 N 3.66481 * 124.23345 * 157.25378 * 2 1 3
18 18 C 1.53002 * 109.46915 * 184.99321 * 14 13 2
19 19 C 1.50702 * 109.47226 * 175.00259 * 18 14 13
20 20 H 1.07999 * 119.99798 * 359.97438 * 19 18 14
21 21 C 1.37877 * 120.00305 * 179.72507 * 19 18 14
22 22 N 1.31507 * 120.00323 * 180.27574 * 21 19 18
23 23 Si 1.86806 * 119.99798 * 0.27466 * 21 19 18
24 24 H 1.48499 * 109.47176 * 89.99959 * 23 21 19
25 25 H 1.48499 * 109.46926 * 210.00180 * 23 21 19
26 26 H 1.48500 * 109.46955 * 329.99924 * 23 21 19
27 27 H 1.09004 * 109.46877 * 187.59764 * 1 2 3
28 28 H 1.08997 * 109.47622 * 307.59636 * 1 2 3
29 29 H 1.09000 * 109.47270 * 67.60573 * 1 2 3
30 30 H 1.08999 * 109.47193 * 186.04229 * 3 2 1
31 31 H 1.09006 * 109.47273 * 306.04568 * 3 2 1
32 32 H 1.07997 * 119.78676 * 0.30524 * 7 6 5
33 33 H 1.07995 * 119.60899 * 179.97438 * 8 7 6
34 34 H 1.08004 * 119.96549 * 180.02562 * 9 8 7
35 35 H 1.07996 * 120.02306 * 179.97438 * 10 9 8
36 36 H 1.08996 * 109.46850 * 79.53493 * 13 2 1
37 37 H 1.08988 * 109.47575 * 319.52595 * 13 2 1
38 38 H 1.08995 * 109.47261 * 55.00390 * 18 14 13
39 39 H 1.08999 * 109.47089 * 295.00145 * 18 14 13
40 40 H 0.96998 * 120.00231 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0471 1.2985
5 7 2.3653 2.0189 2.3497
6 6 1.9212 2.6719 3.4405
7 6 2.5135 2.8063 4.7126
8 6 1.8873 3.5134 5.6936
9 6 0.6581 4.1146 5.4616
10 6 0.0562 4.0003 4.2289
11 6 0.6816 3.2799 3.2134
12 16 0.2047 2.9396 1.5529
13 6 1.9954 -0.7660 -1.1376
14 6 3.4474 -1.1597 -0.8590
15 1 4.0286 -0.2665 -0.6305
16 6 3.4944 -2.0823 0.2870
17 7 3.5307 -2.7942 1.1715
18 6 4.0346 -1.8485 -2.0926
19 6 5.4981 -2.1260 -1.8640
20 1 5.9630 -1.8395 -0.9322
21 6 6.2425 -2.7505 -2.8423
22 7 7.5183 -2.9976 -2.6406
23 14 5.4386 -3.2455 -4.4542
24 1 5.5534 -2.1300 -5.4277
25 1 6.1187 -4.4487 -4.9975
26 1 4.0047 -3.5515 -4.2188
27 1 -0.3633 -1.0187 0.1359
28 1 -0.3634 0.6269 0.8142
29 1 -0.3634 0.3915 -0.9502
30 1 3.0796 1.3445 -0.1082
31 1 1.5610 1.9274 -0.8310
32 1 3.4698 2.3452 4.9105
33 1 2.3528 3.6076 6.6635
34 1 0.1733 4.6726 6.2490
35 1 -0.9005 4.4681 4.0492
36 1 1.9513 -0.1546 -2.0388
37 1 1.3958 -1.6652 -1.2788
38 1 3.9193 -1.1994 -2.9606
39 1 3.5099 -2.7875 -2.2688
40 1 8.0420 -3.4366 -3.3290
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000025233577.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:19
Heat of formation + Delta-G solvation = 65.017134 kcal
Electronic energy + Delta-G solvation = -22542.792009 eV
Core-core repulsion = 19255.215650 eV
Total energy + Delta-G solvation = -3287.576359 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.110 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.37544 -39.56622 -38.03215 -37.02378 -35.43572 -33.74578 -32.09788 -31.52782
-29.45647 -28.74458 -26.35374 -24.96795 -23.69891 -23.23915 -22.87944 -21.40798
-19.54499 -18.91138 -18.38527 -17.64025 -16.97103 -16.59402 -16.38066 -16.24762
-15.90710 -15.49190 -15.28242 -14.96683 -14.84314 -14.61377 -14.25117 -13.93257
-13.76817 -13.47391 -13.33622 -13.18815 -13.09162 -12.87412 -12.75716 -12.69131
-12.62386 -12.28032 -11.99847 -11.87051 -11.62589 -11.54371 -11.25402 -11.08046
-10.71342 -10.60192 -9.68088 -9.29476 -9.08783 -8.22810 -6.28934 -0.61967
0.15091 0.23806 0.65462 1.33173 1.44031 1.47880 1.58158 2.06667
2.14771 2.43160 2.65761 2.81190 3.04355 3.13788 3.34244 3.59064
3.87073 4.03522 4.07466 4.17483 4.28345 4.32971 4.36961 4.37743
4.61240 4.64014 4.68158 4.76588 4.79099 4.90358 4.91218 5.03267
5.13638 5.25046 5.25363 5.40495 5.46454 5.65119 5.77481 5.94289
6.03240 6.28621 6.66994 6.79036 6.92692 7.35400 8.94629
Molecular weight = 315.11amu
Principal moments of inertia in cm(-1)
A = 0.022267 B = 0.002924 C = 0.002749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.140033 B = 9574.104558 C =10181.245817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 N -0.562 5.562
3 C 0.118 3.882
4 C 0.093 3.907
5 N -0.494 5.494
6 C 0.047 3.953
7 C -0.091 4.091
8 C -0.101 4.101
9 C -0.094 4.094
10 C -0.078 4.078
11 C -0.205 4.205
12 S 0.137 5.863
13 C 0.073 3.927
14 C 0.024 3.976
15 H 0.107 0.893
16 C 0.265 3.735
17 N -0.522 5.522
18 C -0.001 4.001
19 C -0.532 4.532
20 H 0.023 0.977
21 C 0.000 4.000
22 N -0.957 5.957
23 Si 0.952 3.048
24 H -0.255 1.255
25 H -0.298 1.298
26 H -0.233 1.233
27 H 0.071 0.929
28 H 0.063 0.937
29 H 0.060 0.940
30 H 0.100 0.900
31 H 0.098 0.902
32 H 0.126 0.874
33 H 0.164 0.836
34 H 0.174 0.826
35 H 0.156 0.844
36 H 0.098 0.902
37 H 0.094 0.906
38 H 0.068 0.932
39 H 0.030 0.970
40 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.669 19.480 7.814 30.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.288 5.288
3 C -0.013 4.013
4 C -0.192 4.192
5 N -0.208 5.208
6 C -0.072 4.072
7 C -0.112 4.112
8 C -0.121 4.121
9 C -0.116 4.116
10 C -0.101 4.101
11 C -0.324 4.324
12 S 0.393 5.607
13 C -0.056 4.056
14 C 0.002 3.998
15 H 0.125 0.875
16 C -0.051 4.051
17 N -0.200 5.200
18 C -0.040 4.040
19 C -0.570 4.570
20 H 0.041 0.959
21 C -0.196 4.196
22 N -0.598 5.598
23 Si 0.775 3.225
24 H -0.179 1.179
25 H -0.224 1.224
26 H -0.156 1.156
27 H 0.090 0.910
28 H 0.082 0.918
29 H 0.079 0.921
30 H 0.118 0.882
31 H 0.116 0.884
32 H 0.144 0.856
33 H 0.181 0.819
34 H 0.191 0.809
35 H 0.174 0.826
36 H 0.116 0.884
37 H 0.112 0.888
38 H 0.086 0.914
39 H 0.049 0.951
40 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -22.657 18.035 8.792 30.264
hybrid contribution 1.225 -0.168 -0.500 1.333
sum -21.432 17.867 8.292 29.109
Atomic orbital electron populations
1.22598 0.85419 1.03145 1.01929 1.61702 1.09589 1.12255 1.45214
1.20962 1.02788 0.88367 0.89197 1.26823 0.94592 0.99514 0.98307
1.66149 1.35078 1.19888 0.99664 1.19586 0.93767 0.99138 0.94725
1.20696 1.00654 0.99816 0.90012 1.21140 0.95671 0.95751 0.99547
1.21635 0.94802 0.98365 0.96776 1.20784 1.00584 0.97390 0.91339
1.24270 1.00019 1.07727 1.00368 1.83431 1.22309 1.50483 1.04463
1.22210 0.91926 0.99266 0.92160 1.19137 0.98734 0.94375 0.87591
0.87545 1.29482 0.89937 0.92526 0.93186 1.80975 1.11927 1.13079
1.13991 1.19593 0.93396 0.97269 0.93768 1.21413 0.95113 1.38719
1.01746 0.95903 1.26107 0.95090 0.95126 1.03305 1.70105 1.09197
1.44207 1.36296 0.85636 0.80345 0.78105 0.78446 1.17935 1.22426
1.15566 0.90994 0.91807 0.92118 0.88159 0.88392 0.85557 0.81875
0.80909 0.82589 0.88363 0.88767 0.91358 0.95129 0.92699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.31 9.33 127.69 1.19 1.50 16
2 N -0.56 -13.62 4.38 -927.06 -4.06 -17.69 16
3 C 0.12 2.64 5.35 85.56 0.46 3.09 16
4 C 0.09 2.39 6.11 88.68 0.54 2.93 16
5 N -0.49 -15.79 10.57 -182.51 -1.93 -17.72 16
6 C 0.05 1.33 7.00 39.78 0.28 1.60 16
7 C -0.09 -2.13 10.05 22.46 0.23 -1.90 16
8 C -0.10 -1.54 9.94 21.92 0.22 -1.32 16
9 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16
10 C -0.08 -1.21 10.07 22.40 0.23 -0.98 16
11 C -0.21 -4.59 6.56 22.94 0.15 -4.44 16
12 S 0.14 2.66 21.34 -56.49 -1.21 1.45 16
13 C 0.07 1.72 4.36 86.30 0.38 2.10 16
14 C 0.02 0.82 2.26 -12.60 -0.03 0.79 16
15 H 0.11 3.70 6.65 -2.39 -0.02 3.68 16
16 C 0.26 11.55 13.67 89.44 1.22 12.77 16
17 N -0.52 -25.60 18.54 20.01 0.37 -25.23 16
18 C 0.00 -0.05 3.49 29.85 0.10 0.05 16
19 C -0.53 -29.26 9.15 25.60 0.23 -29.03 16
20 H 0.02 1.44 7.84 -2.91 -0.02 1.42 16
21 C 0.00 0.00 5.47 84.66 0.46 0.46 16
22 N -0.96 -60.28 13.96 21.45 0.30 -59.99 16
23 Si 0.95 41.37 27.47 68.60 1.88 43.26 16
24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16
25 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16
26 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16
27 H 0.07 1.36 8.13 -2.38 -0.02 1.34 16
28 H 0.06 1.22 5.55 -2.39 -0.01 1.20 16
29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.10 2.52 6.56 -2.39 -0.02 2.51 16
31 H 0.10 1.48 8.12 -2.38 -0.02 1.46 16
32 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16
33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16
34 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16
35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16
36 H 0.10 1.65 8.00 -2.39 -0.02 1.63 16
37 H 0.09 2.10 7.93 -2.39 -0.02 2.09 16
38 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16
39 H 0.03 1.22 7.19 -2.39 -0.02 1.20 16
40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16
Total: -1.00 -80.93 352.09 2.24 -78.69
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.52 kcal
Atomic # 6 Polarization: -19.18 SS G_CDS: 5.88 Total: -13.30 kcal
Atomic # 7 Polarization: -115.30 SS G_CDS: -5.32 Total: -120.62 kcal
Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.26 kcal
Atomic # 16 Polarization: 2.66 SS G_CDS: -1.21 Total: 1.45 kcal
Total: -80.93 2.24 -78.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000025233577.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.710 kcal
(2) G-P(sol) polarization free energy of solvation -80.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds