Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99729 * 2 1 4 4 C 1.50702 * 109.46989 * 66.04443 * 3 2 1 5 5 N 1.27930 * 124.23574 * 89.70074 * 4 3 2 6 6 C 1.34664 * 117.84702 * 179.81113 * 5 4 3 7 7 C 1.40964 * 129.69133 * 180.18153 * 6 5 4 8 8 C 1.36184 * 120.42587 * 180.33823 * 7 6 5 9 9 C 1.38786 * 120.77706 * 359.95403 * 8 7 6 10 10 C 1.37656 * 120.06802 * 0.02562 * 9 8 7 11 11 C 1.39330 * 119.95359 * 0.02562 * 10 9 8 12 12 S 1.70645 * 124.23911 * 269.99713 * 4 3 2 13 13 C 1.46900 * 110.99687 * 236.04559 * 2 1 3 14 14 C 1.53000 * 109.46494 * 199.52625 * 13 2 1 15 15 H 1.08996 * 109.47555 * 304.98993 * 14 13 2 16 16 C 1.47200 * 109.47130 * 64.99483 * 14 13 2 17 17 N 3.66481 * 124.23345 * 157.25378 * 2 1 3 18 18 C 1.53002 * 109.46915 * 184.99321 * 14 13 2 19 19 C 1.50702 * 109.47226 * 175.00259 * 18 14 13 20 20 H 1.07999 * 119.99798 * 359.97438 * 19 18 14 21 21 C 1.37877 * 120.00305 * 179.72507 * 19 18 14 22 22 N 1.31507 * 120.00323 * 180.27574 * 21 19 18 23 23 Si 1.86806 * 119.99798 * 0.27466 * 21 19 18 24 24 H 1.48499 * 109.47176 * 89.99959 * 23 21 19 25 25 H 1.48499 * 109.46926 * 210.00180 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.99924 * 23 21 19 27 27 H 1.09004 * 109.46877 * 187.59764 * 1 2 3 28 28 H 1.08997 * 109.47622 * 307.59636 * 1 2 3 29 29 H 1.09000 * 109.47270 * 67.60573 * 1 2 3 30 30 H 1.08999 * 109.47193 * 186.04229 * 3 2 1 31 31 H 1.09006 * 109.47273 * 306.04568 * 3 2 1 32 32 H 1.07997 * 119.78676 * 0.30524 * 7 6 5 33 33 H 1.07995 * 119.60899 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.96549 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.02306 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.46850 * 79.53493 * 13 2 1 37 37 H 1.08988 * 109.47575 * 319.52595 * 13 2 1 38 38 H 1.08995 * 109.47261 * 55.00390 * 18 14 13 39 39 H 1.08999 * 109.47089 * 295.00145 * 18 14 13 40 40 H 0.96998 * 120.00231 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2985 5 7 2.3653 2.0189 2.3497 6 6 1.9212 2.6719 3.4405 7 6 2.5135 2.8063 4.7126 8 6 1.8873 3.5134 5.6936 9 6 0.6581 4.1146 5.4616 10 6 0.0562 4.0003 4.2289 11 6 0.6816 3.2799 3.2134 12 16 0.2047 2.9396 1.5529 13 6 1.9954 -0.7660 -1.1376 14 6 3.4474 -1.1597 -0.8590 15 1 4.0286 -0.2665 -0.6305 16 6 3.4944 -2.0823 0.2870 17 7 3.5307 -2.7942 1.1715 18 6 4.0346 -1.8485 -2.0926 19 6 5.4981 -2.1260 -1.8640 20 1 5.9630 -1.8395 -0.9322 21 6 6.2425 -2.7505 -2.8423 22 7 7.5183 -2.9976 -2.6406 23 14 5.4386 -3.2455 -4.4542 24 1 5.5534 -2.1300 -5.4277 25 1 6.1187 -4.4487 -4.9975 26 1 4.0047 -3.5515 -4.2188 27 1 -0.3633 -1.0187 0.1359 28 1 -0.3634 0.6269 0.8142 29 1 -0.3634 0.3915 -0.9502 30 1 3.0796 1.3445 -0.1082 31 1 1.5610 1.9274 -0.8310 32 1 3.4698 2.3452 4.9105 33 1 2.3528 3.6076 6.6635 34 1 0.1733 4.6726 6.2490 35 1 -0.9005 4.4681 4.0492 36 1 1.9513 -0.1546 -2.0388 37 1 1.3958 -1.6652 -1.2788 38 1 3.9193 -1.1994 -2.9606 39 1 3.5099 -2.7875 -2.2688 40 1 8.0420 -3.4366 -3.3290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025233577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = 65.017134 kcal Electronic energy + Delta-G solvation = -22542.792009 eV Core-core repulsion = 19255.215650 eV Total energy + Delta-G solvation = -3287.576359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37544 -39.56622 -38.03215 -37.02378 -35.43572 -33.74578 -32.09788 -31.52782 -29.45647 -28.74458 -26.35374 -24.96795 -23.69891 -23.23915 -22.87944 -21.40798 -19.54499 -18.91138 -18.38527 -17.64025 -16.97103 -16.59402 -16.38066 -16.24762 -15.90710 -15.49190 -15.28242 -14.96683 -14.84314 -14.61377 -14.25117 -13.93257 -13.76817 -13.47391 -13.33622 -13.18815 -13.09162 -12.87412 -12.75716 -12.69131 -12.62386 -12.28032 -11.99847 -11.87051 -11.62589 -11.54371 -11.25402 -11.08046 -10.71342 -10.60192 -9.68088 -9.29476 -9.08783 -8.22810 -6.28934 -0.61967 0.15091 0.23806 0.65462 1.33173 1.44031 1.47880 1.58158 2.06667 2.14771 2.43160 2.65761 2.81190 3.04355 3.13788 3.34244 3.59064 3.87073 4.03522 4.07466 4.17483 4.28345 4.32971 4.36961 4.37743 4.61240 4.64014 4.68158 4.76588 4.79099 4.90358 4.91218 5.03267 5.13638 5.25046 5.25363 5.40495 5.46454 5.65119 5.77481 5.94289 6.03240 6.28621 6.66994 6.79036 6.92692 7.35400 8.94629 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002924 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.140033 B = 9574.104558 C =10181.245817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.562 5.562 3 C 0.118 3.882 4 C 0.093 3.907 5 N -0.494 5.494 6 C 0.047 3.953 7 C -0.091 4.091 8 C -0.101 4.101 9 C -0.094 4.094 10 C -0.078 4.078 11 C -0.205 4.205 12 S 0.137 5.863 13 C 0.073 3.927 14 C 0.024 3.976 15 H 0.107 0.893 16 C 0.265 3.735 17 N -0.522 5.522 18 C -0.001 4.001 19 C -0.532 4.532 20 H 0.023 0.977 21 C 0.000 4.000 22 N -0.957 5.957 23 Si 0.952 3.048 24 H -0.255 1.255 25 H -0.298 1.298 26 H -0.233 1.233 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 19.480 7.814 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.288 5.288 3 C -0.013 4.013 4 C -0.192 4.192 5 N -0.208 5.208 6 C -0.072 4.072 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.101 4.101 11 C -0.324 4.324 12 S 0.393 5.607 13 C -0.056 4.056 14 C 0.002 3.998 15 H 0.125 0.875 16 C -0.051 4.051 17 N -0.200 5.200 18 C -0.040 4.040 19 C -0.570 4.570 20 H 0.041 0.959 21 C -0.196 4.196 22 N -0.598 5.598 23 Si 0.775 3.225 24 H -0.179 1.179 25 H -0.224 1.224 26 H -0.156 1.156 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.174 0.826 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.657 18.035 8.792 30.264 hybrid contribution 1.225 -0.168 -0.500 1.333 sum -21.432 17.867 8.292 29.109 Atomic orbital electron populations 1.22598 0.85419 1.03145 1.01929 1.61702 1.09589 1.12255 1.45214 1.20962 1.02788 0.88367 0.89197 1.26823 0.94592 0.99514 0.98307 1.66149 1.35078 1.19888 0.99664 1.19586 0.93767 0.99138 0.94725 1.20696 1.00654 0.99816 0.90012 1.21140 0.95671 0.95751 0.99547 1.21635 0.94802 0.98365 0.96776 1.20784 1.00584 0.97390 0.91339 1.24270 1.00019 1.07727 1.00368 1.83431 1.22309 1.50483 1.04463 1.22210 0.91926 0.99266 0.92160 1.19137 0.98734 0.94375 0.87591 0.87545 1.29482 0.89937 0.92526 0.93186 1.80975 1.11927 1.13079 1.13991 1.19593 0.93396 0.97269 0.93768 1.21413 0.95113 1.38719 1.01746 0.95903 1.26107 0.95090 0.95126 1.03305 1.70105 1.09197 1.44207 1.36296 0.85636 0.80345 0.78105 0.78446 1.17935 1.22426 1.15566 0.90994 0.91807 0.92118 0.88159 0.88392 0.85557 0.81875 0.80909 0.82589 0.88363 0.88767 0.91358 0.95129 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.33 127.69 1.19 1.50 16 2 N -0.56 -13.62 4.38 -927.06 -4.06 -17.69 16 3 C 0.12 2.64 5.35 85.56 0.46 3.09 16 4 C 0.09 2.39 6.11 88.68 0.54 2.93 16 5 N -0.49 -15.79 10.57 -182.51 -1.93 -17.72 16 6 C 0.05 1.33 7.00 39.78 0.28 1.60 16 7 C -0.09 -2.13 10.05 22.46 0.23 -1.90 16 8 C -0.10 -1.54 9.94 21.92 0.22 -1.32 16 9 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 10 C -0.08 -1.21 10.07 22.40 0.23 -0.98 16 11 C -0.21 -4.59 6.56 22.94 0.15 -4.44 16 12 S 0.14 2.66 21.34 -56.49 -1.21 1.45 16 13 C 0.07 1.72 4.36 86.30 0.38 2.10 16 14 C 0.02 0.82 2.26 -12.60 -0.03 0.79 16 15 H 0.11 3.70 6.65 -2.39 -0.02 3.68 16 16 C 0.26 11.55 13.67 89.44 1.22 12.77 16 17 N -0.52 -25.60 18.54 20.01 0.37 -25.23 16 18 C 0.00 -0.05 3.49 29.85 0.10 0.05 16 19 C -0.53 -29.26 9.15 25.60 0.23 -29.03 16 20 H 0.02 1.44 7.84 -2.91 -0.02 1.42 16 21 C 0.00 0.00 5.47 84.66 0.46 0.46 16 22 N -0.96 -60.28 13.96 21.45 0.30 -59.99 16 23 Si 0.95 41.37 27.47 68.60 1.88 43.26 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 27 H 0.07 1.36 8.13 -2.38 -0.02 1.34 16 28 H 0.06 1.22 5.55 -2.39 -0.01 1.20 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 2.52 6.56 -2.39 -0.02 2.51 16 31 H 0.10 1.48 8.12 -2.38 -0.02 1.46 16 32 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.10 1.65 8.00 -2.39 -0.02 1.63 16 37 H 0.09 2.10 7.93 -2.39 -0.02 2.09 16 38 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 39 H 0.03 1.22 7.19 -2.39 -0.02 1.20 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.93 352.09 2.24 -78.69 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.52 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.88 Total: -13.30 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.32 Total: -120.62 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.26 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.21 Total: 1.45 kcal Total: -80.93 2.24 -78.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025233577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.710 kcal (2) G-P(sol) polarization free energy of solvation -80.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds