Wall clock time and date at job start Tue Mar 31 2020 11:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.50702 * 109.46796 * 119.99382 * 2 1 3 5 5 H 1.08009 * 119.99698 * 120.00150 * 4 2 1 6 6 C 1.37872 * 120.00320 * 299.99957 * 4 2 1 7 7 N 1.31512 * 120.00059 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00198 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47058 * 89.99969 * 8 6 4 10 10 H 1.48494 * 109.47554 * 210.00193 * 8 6 4 11 11 H 1.48506 * 109.47152 * 330.00536 * 8 6 4 12 12 N 1.46499 * 109.47089 * 239.99344 * 2 1 3 13 13 C 1.46497 * 120.00415 * 300.00267 * 12 2 1 14 14 C 1.34774 * 119.99738 * 120.00252 * 12 2 1 15 15 O 1.21279 * 120.00105 * 359.97438 * 14 12 2 16 16 C 1.50706 * 120.00014 * 180.02562 * 14 12 2 17 17 C 1.50703 * 109.46982 * 180.02562 * 16 14 12 18 18 C 1.38234 * 120.00257 * 90.00130 * 17 16 14 19 19 C 1.38238 * 119.99675 * 180.27927 * 18 17 16 20 20 C 1.38228 * 120.00120 * 359.47825 * 19 18 17 21 21 C 1.50698 * 120.00201 * 180.23979 * 20 19 18 22 22 F 1.39900 * 109.47070 * 270.28167 * 21 20 19 23 23 F 1.39900 * 109.47156 * 30.27633 * 21 20 19 24 24 F 1.39898 * 109.47473 * 150.27881 * 21 20 19 25 25 C 1.38234 * 120.00000 * 0.52176 * 20 19 18 26 26 C 1.38234 * 119.99503 * 270.01730 * 17 16 14 27 27 H 1.09001 * 109.46610 * 60.00567 * 1 2 3 28 28 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47033 * 300.00669 * 1 2 3 30 30 H 0.96995 * 120.00258 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47074 * 270.00253 * 13 12 2 32 32 H 1.09007 * 109.46855 * 29.99906 * 13 12 2 33 33 H 1.08994 * 109.47792 * 149.99939 * 13 12 2 34 34 H 1.08988 * 109.47229 * 59.99708 * 16 14 12 35 35 H 1.09000 * 109.46558 * 299.99688 * 16 14 12 36 36 H 1.08002 * 119.99744 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.99577 * 179.72816 * 19 18 17 38 38 H 1.08001 * 120.00310 * 179.72161 * 25 20 19 39 39 H 1.07997 * 120.00460 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5660 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0358 -2.0832 15 8 3.0859 1.1254 -1.8916 16 6 3.2951 -0.7462 -3.3140 17 6 4.1330 0.2008 -4.1339 18 6 5.4945 0.2887 -3.9116 19 6 6.2621 1.1616 -4.6598 20 6 5.6699 1.9386 -5.6377 21 6 6.5075 2.8863 -6.4571 22 9 6.5600 4.1313 -5.8212 23 9 7.8027 2.3729 -6.5846 24 9 5.9376 3.0344 -7.7261 25 6 4.3084 1.8507 -5.8601 26 6 3.5399 0.9818 -5.1082 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7081 1.1611 3.4843 31 1 2.4158 -2.7378 -0.9714 32 1 0.6904 -2.3003 -0.9845 33 1 1.6238 -2.2855 -2.5000 34 1 2.4472 -1.0884 -3.9071 35 1 3.9005 -1.6028 -3.0175 36 1 5.9577 -0.3210 -3.1499 37 1 7.3251 1.2334 -4.4831 38 1 3.8450 2.4611 -6.6210 39 1 2.4761 0.9136 -5.2815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:26 Heat of formation + Delta-G solvation = -163.399529 kcal Electronic energy + Delta-G solvation = -25871.901315 eV Core-core repulsion = 21557.517703 eV Total energy + Delta-G solvation = -4314.383612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.26582 -47.79793 -47.71206 -39.93415 -38.67296 -35.41985 -33.47639 -32.78456 -31.18189 -29.93474 -28.32375 -26.18248 -25.28477 -25.00493 -23.02984 -21.97435 -20.73340 -18.61920 -18.55921 -18.47923 -18.32590 -16.68943 -16.36230 -15.73710 -15.58293 -15.13956 -14.78655 -14.63938 -14.56679 -14.34531 -14.20075 -14.19364 -13.96770 -13.89179 -13.51194 -13.13543 -12.73911 -12.67576 -12.57023 -12.42310 -11.89106 -11.63235 -11.57418 -11.30377 -11.20322 -11.07104 -10.86267 -10.73211 -10.27592 -10.20163 -9.34720 -9.18446 -9.11043 -8.83144 -8.45778 -7.64792 -6.10520 -4.18873 0.84865 1.22845 2.56359 3.24551 3.27538 3.31720 3.33888 3.35726 3.62319 3.92275 3.98108 4.33549 4.37236 4.65436 4.68208 4.75514 5.14663 5.18719 5.22166 5.22546 5.45255 5.47605 5.60062 5.73170 5.84572 5.99882 6.07639 6.09723 6.23956 6.43916 6.68507 6.72429 6.77544 7.01203 7.37506 7.47649 7.67732 7.97389 8.15629 8.47102 8.79147 8.98980 9.47917 10.94785 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.002787 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.154218 B =10044.706237 C =10361.420161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.505 3.495 15 O -0.545 6.545 16 C -0.111 4.111 17 C -0.020 4.020 18 C -0.106 4.106 19 C -0.069 4.069 20 C -0.193 4.193 21 C 0.510 3.490 22 F -0.177 7.177 23 F -0.180 7.180 24 F -0.180 7.180 25 C -0.070 4.070 26 C -0.108 4.108 27 H 0.011 0.989 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 -3.051 -17.805 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.325 5.325 13 C -0.059 4.059 14 C 0.291 3.709 15 O -0.423 6.423 16 C -0.151 4.151 17 C -0.020 4.020 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.194 4.194 21 C 0.456 3.544 22 F -0.158 7.158 23 F -0.161 7.161 24 F -0.161 7.161 25 C -0.088 4.088 26 C -0.126 4.126 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.629 -2.295 -17.548 18.898 hybrid contribution 0.404 -0.386 0.840 1.009 sum 7.033 -2.682 -16.708 18.326 Atomic orbital electron populations 1.22100 0.98240 0.99353 1.00884 1.18945 0.90840 0.94520 0.79903 0.91893 1.21311 1.31893 1.13009 0.90299 0.92301 1.24896 0.94924 0.94983 0.98996 1.69872 1.36252 1.22635 1.23808 0.86494 0.78679 0.79836 0.82365 1.20597 1.21109 1.19923 1.48251 1.48922 1.11687 1.23591 1.21586 1.01802 0.83203 0.99323 1.20126 0.79554 0.87184 0.84065 1.90694 1.58000 1.16915 1.76691 1.20875 1.00292 0.98241 0.95728 1.19669 0.93702 0.95065 0.93574 1.21015 0.93321 0.99047 0.99059 1.20849 1.00427 0.94075 0.93338 1.19876 0.95134 1.02231 1.02155 1.18340 0.78177 0.79908 0.78013 1.93235 1.96364 1.44417 1.81798 1.93175 1.40100 1.86850 1.95988 1.93172 1.84632 1.96025 1.42304 1.20837 0.91700 0.97456 0.98778 1.20984 1.00070 0.95856 0.95678 0.96990 0.95083 0.88773 0.92648 0.93205 0.90774 0.92906 0.88069 0.87991 0.84854 0.84865 0.84892 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.26 6.42 2.64 -69.08 -0.18 6.23 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.59 -11.93 2.75 -175.26 -0.48 -12.41 16 13 C 0.08 1.30 9.48 59.85 0.57 1.86 16 14 C 0.50 9.68 7.67 -10.98 -0.08 9.60 16 15 O -0.54 -12.90 15.36 5.56 0.09 -12.81 16 16 C -0.11 -1.44 4.38 -29.03 -0.13 -1.57 16 17 C -0.02 -0.26 4.37 -104.62 -0.46 -0.72 16 18 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 19 C -0.07 -0.82 9.40 -39.58 -0.37 -1.20 16 20 C -0.19 -2.34 5.45 -104.63 -0.57 -2.91 16 21 C 0.51 5.94 3.36 36.00 0.12 6.06 16 22 F -0.18 -2.26 17.30 2.25 0.04 -2.22 16 23 F -0.18 -2.04 16.47 2.25 0.04 -2.01 16 24 F -0.18 -2.03 16.46 2.25 0.04 -1.99 16 25 C -0.07 -0.82 9.40 -39.58 -0.37 -1.19 16 26 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.17 6.43 -51.92 -0.33 0.83 16 33 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 34 H 0.10 1.04 7.35 -51.94 -0.38 0.66 16 35 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.34 7.61 -52.48 -0.40 0.94 16 38 H 0.13 1.29 7.60 -52.49 -0.40 0.89 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -31.27 340.17 -6.36 -37.63 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.51 Total: 0.15 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.30 Total: -2.96 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.14 Total: -36.64 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.27 -6.36 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.771 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds