Wall clock time and date at job start Tue Mar 31 2020 11:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 C 1.50695 * 109.47232 * 239.99171 * 2 1 3 5 5 H 1.08002 * 120.00101 * 240.00175 * 4 2 1 6 6 C 1.37876 * 119.99666 * 60.00496 * 4 2 1 7 7 N 1.31518 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99786 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46913 * 89.99940 * 8 6 4 10 10 H 1.48498 * 109.47073 * 209.99580 * 8 6 4 11 11 H 1.48492 * 109.47183 * 329.99939 * 8 6 4 12 12 N 1.46504 * 109.47037 * 119.99229 * 2 1 3 13 13 C 1.34776 * 119.99997 * 275.00498 * 12 2 1 14 14 O 1.21595 * 120.00193 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99837 * 179.97438 * 13 12 2 16 16 C 1.40174 * 120.00134 * 174.27966 * 15 13 12 17 17 C 1.38946 * 120.50026 * 335.50240 * 16 15 13 18 18 C 1.38749 * 118.42022 * 180.02562 * 17 16 15 19 19 C 1.38064 * 119.34958 * 0.02562 * 18 17 16 20 20 N 1.32003 * 120.96948 * 359.97438 * 19 18 17 21 21 C 1.32155 * 121.71459 * 359.70924 * 20 19 18 22 22 O 1.35751 * 119.72239 * 180.28659 * 21 20 19 23 23 C 1.42902 * 117.00046 * 0.29133 * 22 21 20 24 24 C 1.53006 * 109.47183 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46901 * 300.00237 * 24 23 22 26 26 F 1.39899 * 109.46680 * 59.99466 * 24 23 22 27 27 H 1.09003 * 109.47293 * 300.00512 * 1 2 3 28 28 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47304 * 60.00635 * 1 2 3 30 30 H 0.97004 * 119.99808 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99998 * 94.99460 * 12 2 1 32 32 H 0.97001 * 120.00159 * 354.27244 * 15 13 12 33 33 H 1.07998 * 120.79263 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.32025 * 180.02562 * 18 17 16 35 35 H 1.07997 * 119.51575 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47220 * 299.99744 * 23 22 21 37 37 H 1.08999 * 109.47514 * 60.00107 * 23 22 21 38 38 H 1.08996 * 109.47097 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1200 -4.0077 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1408 -5.1119 11 1 3.6309 -1.7570 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1619 2.4116 15 7 2.5957 -0.6533 3.4578 16 6 2.8436 0.0701 4.6326 17 6 3.1288 1.4288 4.5772 18 6 3.3679 2.1024 5.7664 19 6 3.3163 1.4089 6.9591 20 7 3.0430 0.1177 6.9828 21 6 2.8028 -0.5620 5.8752 22 8 2.5202 -1.8878 5.9471 23 6 2.4939 -2.4759 7.2492 24 6 2.1603 -3.9644 7.1300 25 9 0.9078 -4.1145 6.5250 26 9 3.1335 -4.5993 6.3510 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 0.7089 1.1610 -3.4845 31 1 2.2490 -1.6317 1.1529 32 1 2.7470 -1.6113 3.4371 33 1 3.1645 1.9481 3.6309 34 1 3.5921 3.1588 5.7590 35 1 3.5024 1.9305 7.8863 36 1 3.4696 -2.3585 7.7207 37 1 1.7353 -1.9815 7.8560 38 1 2.1407 -4.4130 8.1232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120442878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:54 Heat of formation + Delta-G solvation = -127.238510 kcal Electronic energy + Delta-G solvation = -26007.576113 eV Core-core repulsion = 21714.680522 eV Total energy + Delta-G solvation = -4292.895591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.19569 -47.22617 -40.99301 -39.36425 -37.99289 -35.42277 -34.35636 -32.55956 -31.75712 -30.88564 -29.45237 -28.18921 -25.26796 -24.51174 -23.32905 -22.68097 -21.27463 -19.90450 -19.04752 -18.37962 -17.77665 -17.70323 -17.23966 -16.89233 -16.11237 -16.06050 -15.74964 -15.11778 -14.89318 -14.60806 -14.18070 -14.07582 -13.81804 -13.58829 -13.49991 -13.34919 -13.07445 -12.66394 -12.44296 -12.26706 -11.82456 -11.48657 -11.35842 -11.13211 -11.08419 -10.87121 -10.62169 -10.33530 -10.24462 -10.04636 -9.48561 -9.13328 -9.06159 -8.58937 -8.11774 -7.69164 -6.14144 -4.23345 1.12725 1.30051 2.52535 3.05092 3.24259 3.31293 3.34075 3.44810 3.56739 3.81092 3.95781 4.16556 4.21521 4.31783 4.50779 4.79989 4.91849 4.97937 5.06863 5.10377 5.18580 5.31585 5.47091 5.92133 6.15706 6.40174 6.66960 6.77389 6.96494 7.06287 7.11076 7.19621 7.41300 7.60565 7.73846 7.80021 7.95706 8.12995 8.68737 8.80181 9.15789 9.44539 10.91901 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003348 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.529624 B = 8362.296448 C = 9726.766301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.584 6.584 15 N -0.681 5.681 16 C 0.133 3.867 17 C -0.064 4.064 18 C -0.177 4.177 19 C 0.097 3.903 20 N -0.521 5.521 21 C 0.278 3.722 22 O -0.299 6.299 23 C 0.023 3.977 24 C 0.270 3.730 25 F -0.197 7.197 26 F -0.199 7.199 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.409 0.591 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 -5.354 21.721 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.462 6.462 15 N -0.329 5.329 16 C 0.033 3.967 17 C -0.092 4.092 18 C -0.198 4.198 19 C -0.059 4.059 20 N -0.245 5.245 21 C 0.096 3.904 22 O -0.207 6.207 23 C -0.054 4.054 24 C 0.216 3.784 25 F -0.179 7.179 26 F -0.180 7.180 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.245 0.755 33 H 0.186 0.814 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.308 -4.829 21.998 22.930 hybrid contribution 0.423 -0.995 -1.470 1.825 sum 4.731 -5.823 20.528 21.856 Atomic orbital electron populations 1.22114 0.98457 0.99207 1.00971 1.18723 0.90929 0.93759 0.78760 0.93145 1.21202 1.32575 1.13314 0.90196 0.92008 1.24874 0.94790 0.94942 0.99030 1.69905 1.35802 1.22393 1.23941 0.86424 0.79177 0.79255 0.82101 1.20526 1.21048 1.19845 1.45903 1.68146 1.13542 1.08934 1.16142 0.78516 0.85518 0.80382 1.90825 1.56941 1.14364 1.84099 1.42720 1.69158 1.11614 1.09376 1.17578 1.02903 0.92504 0.83708 1.21942 0.94220 0.91859 1.01191 1.21968 1.03576 1.01739 0.92481 1.22203 0.97233 0.88159 0.98274 1.67183 1.17930 1.10894 1.28461 1.19332 0.98079 0.84316 0.88711 1.86225 1.85682 1.19088 1.29690 1.23739 1.05165 0.90947 0.85506 1.22134 0.72583 0.91654 0.92035 1.93042 1.42202 1.96536 1.86092 1.93027 1.63050 1.83693 1.78247 0.96573 0.95444 0.89025 0.92526 0.77942 0.75510 0.81353 0.84268 0.82467 0.88627 0.88623 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.28 7.10 2.56 -69.08 -0.18 6.92 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.71 -14.99 5.07 -59.81 -0.30 -15.30 16 13 C 0.69 14.16 8.35 -86.92 -0.73 13.44 16 14 O -0.58 -13.67 13.21 5.28 0.07 -13.60 16 15 N -0.68 -11.26 5.30 -14.00 -0.07 -11.34 16 16 C 0.13 2.11 6.47 -83.32 -0.54 1.57 16 17 C -0.06 -0.98 8.82 -39.13 -0.35 -1.32 16 18 C -0.18 -2.08 10.10 -39.46 -0.40 -2.48 16 19 C 0.10 1.06 11.17 -17.54 -0.20 0.86 16 20 N -0.52 -6.56 9.22 -13.18 -0.12 -6.68 16 21 C 0.28 3.93 7.51 -16.95 -0.13 3.80 16 22 O -0.30 -3.90 9.44 -18.96 -0.18 -4.08 16 23 C 0.02 0.21 5.54 37.16 0.21 0.41 16 24 C 0.27 2.12 5.63 37.16 0.21 2.33 16 25 F -0.20 -2.19 17.28 2.25 0.04 -2.16 16 26 F -0.20 -2.09 17.28 2.25 0.04 -2.05 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 7.09 8.56 -40.82 -0.35 6.74 16 32 H 0.41 5.86 8.38 -40.82 -0.34 5.51 16 33 H 0.17 2.93 5.88 -52.49 -0.31 2.63 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.10 0.77 8.11 -51.93 -0.42 0.34 16 38 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -32.42 337.69 -6.19 -38.61 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.21 Total: 10.57 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.15 Total: 9.46 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.13 Total: -57.39 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.11 Total: -17.68 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.42 -6.19 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120442878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.631 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds