Wall clock time and date at job start Tue Mar 31 2020 11:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 C 1.50695 * 109.47232 * 239.99171 * 2 1 3 5 5 H 1.08002 * 120.00101 * 240.00175 * 4 2 1 6 6 C 1.37876 * 119.99666 * 60.00496 * 4 2 1 7 7 N 1.31518 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99786 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46913 * 89.99940 * 8 6 4 10 10 H 1.48498 * 109.47073 * 209.99580 * 8 6 4 11 11 H 1.48492 * 109.47183 * 329.99939 * 8 6 4 12 12 N 1.46504 * 109.47037 * 119.99229 * 2 1 3 13 13 C 1.34776 * 119.99997 * 275.00498 * 12 2 1 14 14 O 1.21595 * 120.00193 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99837 * 179.97438 * 13 12 2 16 16 C 1.40174 * 120.00134 * 174.27966 * 15 13 12 17 17 C 1.38946 * 120.50026 * 335.50240 * 16 15 13 18 18 C 1.38749 * 118.42022 * 180.02562 * 17 16 15 19 19 C 1.38064 * 119.34958 * 0.02562 * 18 17 16 20 20 N 1.32003 * 120.96948 * 359.97438 * 19 18 17 21 21 C 1.32155 * 121.71459 * 359.70924 * 20 19 18 22 22 O 1.35751 * 119.72239 * 180.28659 * 21 20 19 23 23 C 1.42902 * 117.00046 * 0.29133 * 22 21 20 24 24 C 1.53006 * 109.47183 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46901 * 300.00237 * 24 23 22 26 26 F 1.39899 * 109.46680 * 59.99466 * 24 23 22 27 27 H 1.09003 * 109.47293 * 300.00512 * 1 2 3 28 28 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47304 * 60.00635 * 1 2 3 30 30 H 0.97004 * 119.99808 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99998 * 94.99460 * 12 2 1 32 32 H 0.97001 * 120.00159 * 354.27244 * 15 13 12 33 33 H 1.07998 * 120.79263 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.32025 * 180.02562 * 18 17 16 35 35 H 1.07997 * 119.51575 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47220 * 299.99744 * 23 22 21 37 37 H 1.08999 * 109.47514 * 60.00107 * 23 22 21 38 38 H 1.08996 * 109.47097 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1200 -4.0077 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1408 -5.1119 11 1 3.6309 -1.7570 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1619 2.4116 15 7 2.5957 -0.6533 3.4578 16 6 2.8436 0.0701 4.6326 17 6 3.1288 1.4288 4.5772 18 6 3.3679 2.1024 5.7664 19 6 3.3163 1.4089 6.9591 20 7 3.0430 0.1177 6.9828 21 6 2.8028 -0.5620 5.8752 22 8 2.5202 -1.8878 5.9471 23 6 2.4939 -2.4759 7.2492 24 6 2.1603 -3.9644 7.1300 25 9 0.9078 -4.1145 6.5250 26 9 3.1335 -4.5993 6.3510 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 0.7089 1.1610 -3.4845 31 1 2.2490 -1.6317 1.1529 32 1 2.7470 -1.6113 3.4371 33 1 3.1645 1.9481 3.6309 34 1 3.5921 3.1588 5.7590 35 1 3.5024 1.9305 7.8863 36 1 3.4696 -2.3585 7.7207 37 1 1.7353 -1.9815 7.8560 38 1 2.1407 -4.4130 8.1232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120442878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:54 Heat of formation + Delta-G solvation = -151.519352 kcal Electronic energy + Delta-G solvation = -26008.629009 eV Core-core repulsion = 21714.680522 eV Total energy + Delta-G solvation = -4293.948487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.90681 -47.96232 -42.14197 -40.79954 -38.96833 -37.11690 -35.93392 -34.43007 -32.81759 -31.92636 -30.80318 -29.61594 -27.34704 -25.49400 -24.47807 -23.55080 -22.90557 -21.63315 -20.13097 -19.71057 -19.03828 -18.49732 -17.96650 -17.89185 -17.83486 -17.10521 -16.90009 -16.74692 -16.13269 -15.96771 -15.74958 -15.13754 -14.91581 -14.71299 -14.45662 -14.41015 -14.32320 -14.22410 -13.80354 -13.46430 -13.15812 -13.00568 -12.93795 -12.73471 -12.31718 -12.29002 -12.14176 -12.10278 -11.97473 -11.43312 -11.11360 -10.73779 -10.62135 -10.31027 -9.86550 -8.91712 -8.18347 -6.35536 0.08952 0.22777 1.45167 1.46055 1.55712 1.63658 1.69616 2.09513 2.41525 2.80522 2.83150 3.12181 3.24777 3.30498 3.40829 3.52926 3.76647 3.99552 4.13815 4.23022 4.34873 4.43855 4.51088 4.72025 4.88219 4.91456 5.07198 5.19236 5.28310 5.37483 5.53079 5.57760 5.61192 5.79928 6.06720 6.10159 6.15820 6.71108 6.74662 7.11765 7.32322 7.57641 8.88201 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003348 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.529624 B = 8362.296448 C = 9726.766301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.006 0.994 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.265 1.265 12 N -0.713 5.713 13 C 0.695 3.305 14 O -0.619 6.619 15 N -0.667 5.667 16 C 0.094 3.906 17 C -0.082 4.082 18 C -0.173 4.173 19 C 0.114 3.886 20 N -0.520 5.520 21 C 0.281 3.719 22 O -0.317 6.317 23 C 0.015 3.985 24 C 0.265 3.735 25 F -0.219 7.219 26 F -0.216 7.216 27 H 0.011 0.989 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.419 0.581 33 H 0.139 0.861 34 H 0.169 0.831 35 H 0.204 0.796 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -6.500 23.900 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.365 5.365 13 C 0.395 3.605 14 O -0.500 6.500 15 N -0.316 5.316 16 C -0.005 4.005 17 C -0.110 4.110 18 C -0.194 4.194 19 C -0.042 4.042 20 N -0.243 5.243 21 C 0.100 3.900 22 O -0.225 6.225 23 C -0.060 4.060 24 C 0.212 3.788 25 F -0.201 7.201 26 F -0.198 7.198 27 H 0.030 0.970 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.237 0.763 32 H 0.256 0.744 33 H 0.157 0.843 34 H 0.186 0.814 35 H 0.221 0.779 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.271 -6.028 24.239 25.527 hybrid contribution 0.165 -0.567 -1.946 2.034 sum 5.436 -6.595 22.293 23.875 Atomic orbital electron populations 1.21935 0.98408 0.99380 0.99636 1.18307 0.90887 0.91885 0.80405 0.97644 1.21510 1.32783 1.13658 0.90678 0.90952 1.25768 0.94827 0.95555 1.02190 1.70047 1.36844 1.23805 1.24694 0.85324 0.78912 0.78028 0.77933 1.19717 1.21060 1.18941 1.45519 1.68610 1.14063 1.08279 1.16184 0.78277 0.85055 0.80939 1.90804 1.58360 1.15994 1.84821 1.42363 1.68537 1.11943 1.08708 1.17811 1.05654 0.93046 0.83942 1.21867 0.95485 0.92095 1.01552 1.22279 1.02542 1.03108 0.91425 1.22988 0.94135 0.87547 0.99537 1.67352 1.17969 1.11620 1.27363 1.19311 0.97463 0.84938 0.88315 1.86202 1.85419 1.18565 1.32322 1.24110 1.06539 0.91387 0.84001 1.22793 0.71020 0.91262 0.93715 1.92998 1.43706 1.96598 1.86752 1.92991 1.63740 1.83956 1.79078 0.97014 0.94324 0.91142 0.92446 0.76280 0.74387 0.84305 0.81393 0.77910 0.86949 0.87524 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.97 9.26 71.98 0.67 -6.30 16 2 C 0.29 15.17 2.56 44.24 0.11 15.28 16 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 8 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 N -0.71 -30.79 5.07 -461.41 -2.34 -33.13 16 13 C 0.70 29.53 8.35 179.06 1.50 31.02 16 14 O -0.62 -30.61 13.21 -4.01 -0.05 -30.66 16 15 N -0.67 -22.67 5.30 -316.46 -1.68 -24.35 16 16 C 0.09 3.01 6.47 38.27 0.25 3.26 16 17 C -0.08 -2.54 8.82 22.56 0.20 -2.35 16 18 C -0.17 -3.75 10.10 22.35 0.23 -3.52 16 19 C 0.11 2.08 11.17 84.63 0.95 3.02 16 20 N -0.52 -11.69 9.22 -308.48 -2.84 -14.53 16 21 C 0.28 7.64 7.51 84.94 0.64 8.28 16 22 O -0.32 -7.92 9.44 -90.76 -0.86 -8.77 16 23 C 0.02 0.24 5.54 71.98 0.40 0.64 16 24 C 0.26 3.56 5.63 71.98 0.41 3.96 16 25 F -0.22 -4.59 17.28 44.97 0.78 -3.82 16 26 F -0.22 -4.22 17.28 44.97 0.78 -3.44 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 31 H 0.40 14.85 8.56 -92.71 -0.79 14.05 16 32 H 0.42 12.20 8.38 -92.71 -0.78 11.42 16 33 H 0.14 5.17 5.88 -2.91 -0.02 5.15 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.11 1.42 8.11 -2.39 -0.02 1.40 16 38 H 0.19 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -73.24 337.69 1.62 -71.62 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.44 Total: 29.44 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 6.01 Total: 25.67 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -6.62 Total: -124.18 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.91 Total: -39.44 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.55 Total: -7.26 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.24 1.62 -71.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120442878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.899 kcal (2) G-P(sol) polarization free energy of solvation -73.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds