Wall clock time and date at job start Tue Mar 31 2020 11:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76204 * 102.99960 * 2 1 4 4 C 1.39231 * 120.05167 * 180.02562 * 3 2 1 5 5 N 1.32008 * 120.07881 * 179.97438 * 4 3 2 6 6 C 1.32090 * 120.17524 * 0.02562 * 5 4 3 7 7 C 1.39137 * 120.09797 * 359.97438 * 6 5 4 8 8 N 1.38999 * 120.03814 * 180.02562 * 7 6 5 9 9 C 1.46495 * 119.99985 * 359.97438 * 8 7 6 10 10 H 1.08993 * 109.47291 * 34.99352 * 9 8 7 11 11 C 1.53001 * 109.47044 * 154.99666 * 9 8 7 12 12 C 1.50698 * 109.47157 * 294.99593 * 11 9 8 13 13 H 1.07999 * 119.99756 * 0.02562 * 12 11 9 14 14 C 1.37876 * 120.00045 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99755 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47082 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47053 * 120.00027 * 16 14 12 19 19 H 1.48490 * 109.47213 * 239.99767 * 16 14 12 20 20 C 1.50705 * 109.46789 * 274.99341 * 9 8 7 21 21 C 1.38231 * 119.99922 * 319.72742 * 20 9 8 22 22 C 1.38242 * 119.99738 * 179.78665 * 21 20 9 23 23 C 1.38241 * 119.99728 * 0.44501 * 22 21 20 24 24 C 1.38230 * 120.00118 * 359.80839 * 23 22 21 25 25 C 1.38233 * 120.00199 * 359.97438 * 24 23 22 26 26 N 1.32751 * 119.92277 * 0.02562 * 7 6 5 27 27 H 1.09006 * 109.46566 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47208 * 300.00157 * 1 2 3 29 29 H 1.08998 * 109.47278 * 60.00440 * 1 2 3 30 30 H 1.08003 * 119.95842 * 359.95857 * 4 3 2 31 31 H 1.08000 * 119.95472 * 179.97438 * 6 5 4 32 32 H 0.97007 * 119.99692 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.47178 * 54.99895 * 11 9 8 34 34 H 1.09003 * 109.47040 * 174.99822 * 11 9 8 35 35 H 0.97008 * 119.99860 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.00413 * 0.02562 * 21 20 9 37 37 H 1.07992 * 120.00278 * 180.27875 * 22 21 20 38 38 H 1.07998 * 119.99926 * 179.83260 * 23 22 21 39 39 H 1.08004 * 120.00002 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.00343 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5415 2.1252 -0.0005 5 7 3.8390 3.4113 -0.0011 6 6 2.8761 4.3155 -0.0005 7 6 1.5435 3.9157 0.0000 8 7 0.5312 4.8683 0.0000 9 6 0.8673 6.2942 0.0000 10 1 1.7700 6.4547 -0.5893 11 6 -0.2882 7.0905 -0.6097 12 6 -0.4441 6.7177 -2.0615 13 1 0.2147 5.9857 -2.5048 14 6 -1.4279 7.3111 -2.8238 15 7 -2.2305 8.2021 -2.2837 16 14 -1.6217 6.8486 -4.6232 17 1 -0.6038 5.8295 -4.9847 18 1 -2.9801 6.2920 -4.8477 19 1 -1.4358 8.0559 -5.4674 20 6 1.1029 6.7547 1.4155 21 6 0.2888 6.2985 2.4352 22 6 0.5077 6.7175 3.7343 23 6 1.5350 7.5999 4.0121 24 6 2.3457 8.0601 2.9915 25 6 2.1297 7.6377 1.6932 26 7 1.2398 2.6234 0.0005 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 4.3315 1.3887 -0.0003 31 1 3.1236 5.3668 -0.0005 32 1 -0.3977 4.5889 0.0000 33 1 -1.2097 6.8611 -0.0746 34 1 -0.0770 8.1568 -0.5291 35 1 -2.9224 8.6199 -2.8201 36 1 -0.5158 5.6117 2.2177 37 1 -0.1254 6.3576 4.5317 38 1 1.7043 7.9293 5.0266 39 1 3.1485 8.7492 3.2086 40 1 2.7628 7.9976 0.8957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132851213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:34 Heat of formation + Delta-G solvation = 53.029833 kcal Electronic energy + Delta-G solvation = -23281.487714 eV Core-core repulsion = 19993.391546 eV Total energy + Delta-G solvation = -3288.096168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92566 -40.33200 -37.73735 -35.42510 -34.82068 -33.07862 -31.77182 -30.88120 -30.05521 -29.75254 -26.84108 -25.84552 -24.39965 -23.75620 -23.29841 -21.52938 -19.24356 -18.88882 -18.50333 -17.67933 -17.59014 -17.05960 -16.63483 -16.32222 -16.06446 -15.90575 -15.23776 -15.05349 -14.65498 -14.43799 -14.27204 -14.19536 -13.96928 -13.69128 -13.61308 -13.35670 -13.00666 -12.72694 -12.60747 -12.53388 -12.44969 -12.22022 -11.96933 -11.74947 -11.67958 -11.54734 -11.17884 -10.62907 -10.16834 -9.77108 -9.57456 -9.23556 -8.43502 -8.23974 -6.33156 -0.17174 0.30895 0.37143 0.47857 0.55167 1.19012 1.34234 1.37446 1.47780 2.12382 2.36088 2.72721 2.94971 3.11076 3.45797 3.54968 3.76784 3.92170 3.99680 4.18041 4.21607 4.29149 4.30276 4.33751 4.35335 4.38314 4.62438 4.71414 4.76977 4.92412 5.10522 5.16111 5.19903 5.35384 5.40929 5.59998 5.61763 5.64596 5.74993 5.87602 6.12198 6.17472 6.42572 6.52780 6.80004 6.91153 7.35823 8.86779 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.005537 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.418357 B = 5055.240949 C = 7521.159843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.040 6.040 3 C 0.109 3.891 4 C -0.015 4.015 5 N -0.399 5.399 6 C -0.035 4.035 7 C 0.377 3.623 8 N -0.679 5.679 9 C 0.208 3.792 10 H 0.082 0.918 11 C 0.037 3.963 12 C -0.525 4.525 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.952 3.048 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.125 4.125 26 N -0.531 5.531 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.191 0.809 31 H 0.167 0.833 32 H 0.403 0.597 33 H 0.004 0.996 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 -10.447 10.150 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.197 5.803 3 C -0.144 4.144 4 C -0.183 4.183 5 N -0.112 5.112 6 C -0.205 4.205 7 C 0.134 3.866 8 N -0.307 5.307 9 C 0.102 3.898 10 H 0.099 0.901 11 C 0.000 4.000 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.105 4.105 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.144 4.144 26 N -0.259 5.259 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.208 0.792 31 H 0.184 0.816 32 H 0.239 0.761 33 H 0.023 0.977 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.754 -11.133 10.093 17.391 hybrid contribution -1.919 1.182 -1.187 2.547 sum 6.835 -9.951 8.906 15.002 Atomic orbital electron populations 1.23548 0.92552 1.07674 1.06192 1.85206 1.09033 0.95628 1.90452 1.24354 0.93247 0.99883 0.96950 1.23296 0.94838 0.93446 1.06756 1.68168 1.35306 1.01921 1.05778 1.23045 0.87762 1.00833 1.08873 1.19427 0.89558 0.87732 0.89914 1.44593 1.06564 1.03310 1.76223 1.19978 0.99792 0.78458 0.91526 0.90054 1.19130 0.91947 0.94526 0.94428 1.21414 1.15747 1.23165 0.96029 0.92843 1.25721 0.95622 0.94979 1.02372 1.70066 1.20082 1.28541 1.37803 0.85595 0.77869 0.78141 0.80602 1.19640 1.20624 1.20360 1.20458 0.96413 0.98305 0.95350 1.20990 0.99038 1.00284 0.93458 1.21378 0.98846 0.98360 0.96137 1.21466 0.95237 0.97358 1.00402 1.21427 1.00195 1.00040 0.92168 1.21249 0.97490 0.97527 0.98104 1.68270 1.35223 1.00310 1.22127 0.84875 0.89940 0.90413 0.79200 0.81569 0.76072 0.97730 0.96677 0.92759 0.87499 0.84548 0.83439 0.83437 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 10.04 113.37 1.14 -1.38 16 2 S -0.04 -0.89 22.57 -56.49 -1.27 -2.16 16 3 C 0.11 3.21 7.00 84.78 0.59 3.81 16 4 C -0.02 -0.44 10.97 84.91 0.93 0.49 16 5 N -0.40 -13.00 10.48 -194.04 -2.03 -15.04 16 6 C -0.03 -1.18 10.32 84.87 0.88 -0.31 16 7 C 0.38 13.41 7.64 132.96 1.02 14.43 16 8 N -0.68 -24.97 4.21 -327.85 -1.38 -26.35 16 9 C 0.21 7.87 1.82 44.25 0.08 7.95 16 10 H 0.08 3.07 6.33 -2.39 -0.02 3.06 16 11 C 0.04 1.77 4.49 29.85 0.13 1.91 16 12 C -0.53 -27.76 8.84 25.60 0.23 -27.54 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 14 C 0.01 0.65 5.46 84.65 0.46 1.11 16 15 N -0.92 -53.44 13.29 21.45 0.28 -53.15 16 16 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.10 -3.50 4.79 -19.86 -0.10 -3.59 16 21 C -0.12 -3.85 9.32 22.27 0.21 -3.64 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.13 -2.99 10.05 22.27 0.22 -2.76 16 24 C -0.12 -2.96 10.05 22.27 0.22 -2.73 16 25 C -0.13 -3.68 9.67 22.27 0.22 -3.47 16 26 N -0.53 -17.96 9.63 -189.01 -1.82 -19.78 16 27 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.17 5.40 6.17 -2.91 -0.02 5.38 16 32 H 0.40 15.36 8.73 -92.70 -0.81 14.55 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 36 H 0.11 3.54 7.73 -2.91 -0.02 3.52 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.13 3.49 8.04 -2.91 -0.02 3.47 16 Total: -1.00 -62.84 357.49 2.51 -60.33 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.25 Total: 29.62 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 6.46 Total: -18.98 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.95 Total: -114.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -1.27 Total: -2.16 kcal Total: -62.84 2.51 -60.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132851213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.363 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds