Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00547 * 2 1 4 4 C 1.50702 * 109.47249 * 270.00171 * 3 2 1 5 5 H 1.08000 * 119.99664 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99982 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00094 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99996 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47184 * 90.00096 * 8 6 4 10 10 H 1.48506 * 109.46910 * 210.00085 * 8 6 4 11 11 H 1.48496 * 109.47163 * 329.99849 * 8 6 4 12 12 C 1.34777 * 119.99676 * 180.02562 * 2 1 3 13 13 O 1.21558 * 120.00065 * 184.29471 * 12 2 1 14 14 C 1.47846 * 119.99957 * 4.29405 * 12 2 1 15 15 C 1.39581 * 120.14415 * 148.11157 * 14 12 2 16 16 C 1.37954 * 119.85304 * 180.27302 * 15 14 12 17 17 C 1.38367 * 120.14173 * 359.49191 * 16 15 14 18 18 C 1.50703 * 119.84941 * 180.25528 * 17 16 15 19 19 C 1.52994 * 109.47062 * 270.24898 * 18 17 16 20 20 C 1.52996 * 109.47404 * 180.02562 * 19 18 17 21 21 F 1.39907 * 109.46812 * 59.99894 * 20 19 18 22 22 F 1.39902 * 109.47809 * 180.02562 * 20 19 18 23 23 F 1.39896 * 109.47361 * 300.00394 * 20 19 18 24 24 C 1.38358 * 120.29157 * 0.50691 * 17 16 15 25 25 C 1.37955 * 120.14701 * 359.75089 * 24 17 16 26 26 H 1.09003 * 109.46683 * 274.48502 * 1 2 3 27 27 H 1.09003 * 109.46605 * 34.48218 * 1 2 3 28 28 H 1.08994 * 109.47647 * 154.47975 * 1 2 3 29 29 H 1.08996 * 109.46737 * 30.00179 * 3 2 1 30 30 H 1.09002 * 109.47242 * 150.00309 * 3 2 1 31 31 H 0.97000 * 119.99917 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.07566 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.93071 * 179.72421 * 16 15 14 34 34 H 1.08997 * 109.47215 * 30.25444 * 18 17 16 35 35 H 1.09005 * 109.46805 * 150.25240 * 18 17 16 36 36 H 1.08997 * 109.47552 * 300.00340 * 19 18 17 37 37 H 1.09005 * 109.47032 * 60.00481 * 19 18 17 38 38 H 1.08002 * 119.92459 * 179.76836 * 24 17 16 39 39 H 1.07996 * 120.06994 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6727 7 7 3.5536 3.6179 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.3066 4.2602 -3.9002 10 1 4.6971 4.2007 -3.4966 11 1 3.5542 2.2206 -4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3518 -1.1688 0.0783 14 6 1.4026 -2.4457 -0.0970 15 6 1.9812 -3.5410 -0.7404 16 6 1.2866 -4.7294 -0.8318 17 6 0.0233 -4.8402 -0.2783 18 6 -0.7272 -6.1433 -0.3770 19 6 -1.5604 -6.1559 -1.6601 20 6 -2.3229 -7.4785 -1.7601 21 9 -3.1684 -7.6142 -0.6537 22 9 -3.0844 -7.4904 -2.9337 23 9 -1.4129 -8.5408 -1.7845 24 6 -0.5559 -3.7584 0.3609 25 6 0.1258 -2.5627 0.4547 26 1 -0.3633 0.0804 1.0246 27 1 -0.3632 0.8472 -0.5818 28 1 -0.3634 -0.9273 -0.4427 29 1 1.6086 2.0283 0.5138 30 1 3.1500 1.1382 0.5138 31 1 4.0305 4.4437 -0.8504 32 1 2.9685 -3.4568 -1.1699 33 1 1.7313 -5.5762 -1.3333 34 1 -0.0179 -6.9706 -0.3962 35 1 -1.3859 -6.2493 0.4850 36 1 -2.2698 -5.3286 -1.6409 37 1 -0.9017 -6.0498 -2.5221 38 1 -1.5437 -3.8503 0.7876 39 1 -0.3276 -1.7189 0.9535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160944661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -160.759959 kcal Electronic energy + Delta-G solvation = -25392.554260 eV Core-core repulsion = 21078.285109 eV Total energy + Delta-G solvation = -4314.269151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.44831 -47.94540 -47.92651 -40.11432 -38.27218 -35.07735 -34.85524 -32.72200 -31.06618 -30.78748 -27.91947 -26.71294 -25.80852 -23.61323 -22.82270 -22.47730 -21.29303 -19.20751 -18.90264 -18.73752 -17.74691 -16.79900 -16.56116 -16.10712 -15.62083 -15.20231 -14.84698 -14.81180 -14.60474 -14.37430 -14.28461 -14.13246 -14.09069 -14.04338 -13.88254 -13.45070 -13.39391 -12.97657 -12.56662 -12.36879 -12.28450 -12.00286 -11.83845 -11.69925 -11.33266 -11.21147 -10.95561 -10.76189 -10.58280 -10.19628 -9.68473 -9.11174 -8.95473 -8.69473 -8.46793 -7.71319 -6.07812 -4.13093 0.94776 1.34156 2.41332 3.19922 3.27989 3.34776 3.38902 3.43593 3.66058 3.68684 3.80482 4.06241 4.41582 4.45140 4.54894 4.62668 4.81669 4.89809 4.99944 5.01727 5.19129 5.26851 5.31420 5.47062 5.55603 5.63769 5.79775 5.83534 5.96921 6.16988 6.24893 6.40764 6.44688 6.84259 7.02477 7.39624 7.46999 7.88279 8.18518 8.32238 8.84097 9.00313 9.52158 11.00312 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.002496 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.466507 B =11213.275399 C =11551.889974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.593 5.593 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.543 3.457 13 O -0.537 6.537 14 C -0.113 4.113 15 C -0.064 4.064 16 C -0.122 4.122 17 C -0.078 4.078 18 C -0.082 4.082 19 C -0.162 4.162 20 C 0.451 3.549 21 F -0.184 7.184 22 F -0.185 7.185 23 F -0.184 7.184 24 C -0.124 4.124 25 C -0.101 4.101 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 -20.941 0.346 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.323 5.323 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.330 3.670 13 O -0.415 6.415 14 C -0.117 4.117 15 C -0.083 4.083 16 C -0.140 4.140 17 C -0.079 4.079 18 C -0.119 4.119 19 C -0.200 4.200 20 C 0.397 3.603 21 F -0.166 7.166 22 F -0.167 7.167 23 F -0.166 7.166 24 C -0.142 4.142 25 C -0.120 4.120 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.479 -20.745 0.433 24.743 hybrid contribution -0.025 0.261 -1.049 1.081 sum -13.503 -20.483 -0.616 24.542 Atomic orbital electron populations 1.22276 0.81769 1.03278 1.00485 1.48066 1.06188 1.07680 1.70412 1.19351 0.92702 0.77780 0.97683 1.21424 1.36763 1.06397 0.92191 0.92411 1.24939 0.95268 0.96344 0.97528 1.69931 1.38256 1.14318 1.30775 0.86480 0.77720 0.78613 0.84523 1.20593 1.21027 1.19865 1.18217 0.87235 0.83417 0.78157 1.90753 1.13490 1.87060 1.50238 1.20321 0.95162 0.95331 1.00837 1.21261 0.99701 0.91294 0.96074 1.20972 0.94459 0.97831 1.00742 1.19685 0.94831 0.94586 0.98762 1.20566 0.98739 0.96340 0.96292 1.22936 1.01188 0.93052 1.02863 1.20668 0.78184 0.87982 0.73423 1.93188 1.72877 1.96604 1.53918 1.93199 1.77460 1.96952 1.49081 1.93186 1.66831 1.60398 1.96167 1.20967 1.00239 0.92426 1.00584 1.21970 0.93525 0.98152 0.98315 0.93212 0.90936 0.90616 0.94771 0.93536 0.92643 0.84880 0.85581 0.89517 0.89503 0.86877 0.86889 0.85594 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 8.80 59.85 0.53 1.54 16 2 N -0.59 -12.63 2.86 -184.08 -0.53 -13.16 16 3 C 0.24 6.38 5.21 -5.19 -0.03 6.35 16 4 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.54 11.61 7.44 -12.33 -0.09 11.52 16 13 O -0.54 -13.81 16.31 5.32 0.09 -13.72 16 14 C -0.11 -1.83 5.47 -104.97 -0.57 -2.40 16 15 C -0.06 -0.92 9.60 -39.18 -0.38 -1.30 16 16 C -0.12 -1.30 9.68 -39.64 -0.38 -1.69 16 17 C -0.08 -0.72 5.14 -104.53 -0.54 -1.26 16 18 C -0.08 -0.54 5.09 -27.88 -0.14 -0.68 16 19 C -0.16 -0.94 5.24 -26.74 -0.14 -1.08 16 20 C 0.45 3.27 3.16 37.16 0.12 3.39 16 21 F -0.18 -1.48 16.80 2.25 0.04 -1.44 16 22 F -0.19 -1.56 17.32 2.25 0.04 -1.52 16 23 F -0.18 -1.51 16.80 2.25 0.04 -1.47 16 24 C -0.12 -1.21 9.68 -39.64 -0.38 -1.59 16 25 C -0.10 -1.26 7.44 -39.19 -0.29 -1.55 16 26 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 27 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 28 H 0.08 0.99 4.72 -51.93 -0.24 0.75 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.13 1.99 7.95 -52.49 -0.42 1.58 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.09 0.53 7.75 -51.93 -0.40 0.13 16 35 H 0.09 0.51 7.74 -51.93 -0.40 0.11 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 1.63 4.80 -52.49 -0.25 1.38 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -33.54 343.50 -6.72 -40.26 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.56 Total: -2.72 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.72 Total: -2.38 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.21 Total: -38.88 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.11 Total: -4.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.54 -6.72 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160944661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.495 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds