Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00547 * 2 1 4 4 C 1.50702 * 109.47249 * 270.00171 * 3 2 1 5 5 H 1.08000 * 119.99664 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99982 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00094 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99996 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47184 * 90.00096 * 8 6 4 10 10 H 1.48506 * 109.46910 * 210.00085 * 8 6 4 11 11 H 1.48496 * 109.47163 * 329.99849 * 8 6 4 12 12 C 1.34777 * 119.99676 * 180.02562 * 2 1 3 13 13 O 1.21558 * 120.00065 * 184.29471 * 12 2 1 14 14 C 1.47846 * 119.99957 * 4.29405 * 12 2 1 15 15 C 1.39581 * 120.14415 * 148.11157 * 14 12 2 16 16 C 1.37954 * 119.85304 * 180.27302 * 15 14 12 17 17 C 1.38367 * 120.14173 * 359.49191 * 16 15 14 18 18 C 1.50703 * 119.84941 * 180.25528 * 17 16 15 19 19 C 1.52994 * 109.47062 * 270.24898 * 18 17 16 20 20 C 1.52996 * 109.47404 * 180.02562 * 19 18 17 21 21 F 1.39907 * 109.46812 * 59.99894 * 20 19 18 22 22 F 1.39902 * 109.47809 * 180.02562 * 20 19 18 23 23 F 1.39896 * 109.47361 * 300.00394 * 20 19 18 24 24 C 1.38358 * 120.29157 * 0.50691 * 17 16 15 25 25 C 1.37955 * 120.14701 * 359.75089 * 24 17 16 26 26 H 1.09003 * 109.46683 * 274.48502 * 1 2 3 27 27 H 1.09003 * 109.46605 * 34.48218 * 1 2 3 28 28 H 1.08994 * 109.47647 * 154.47975 * 1 2 3 29 29 H 1.08996 * 109.46737 * 30.00179 * 3 2 1 30 30 H 1.09002 * 109.47242 * 150.00309 * 3 2 1 31 31 H 0.97000 * 119.99917 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.07566 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.93071 * 179.72421 * 16 15 14 34 34 H 1.08997 * 109.47215 * 30.25444 * 18 17 16 35 35 H 1.09005 * 109.46805 * 150.25240 * 18 17 16 36 36 H 1.08997 * 109.47552 * 300.00340 * 19 18 17 37 37 H 1.09005 * 109.47032 * 60.00481 * 19 18 17 38 38 H 1.08002 * 119.92459 * 179.76836 * 24 17 16 39 39 H 1.07996 * 120.06994 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6727 7 7 3.5536 3.6179 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.3066 4.2602 -3.9002 10 1 4.6971 4.2007 -3.4966 11 1 3.5542 2.2206 -4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3518 -1.1688 0.0783 14 6 1.4026 -2.4457 -0.0970 15 6 1.9812 -3.5410 -0.7404 16 6 1.2866 -4.7294 -0.8318 17 6 0.0233 -4.8402 -0.2783 18 6 -0.7272 -6.1433 -0.3770 19 6 -1.5604 -6.1559 -1.6601 20 6 -2.3229 -7.4785 -1.7601 21 9 -3.1684 -7.6142 -0.6537 22 9 -3.0844 -7.4904 -2.9337 23 9 -1.4129 -8.5408 -1.7845 24 6 -0.5559 -3.7584 0.3609 25 6 0.1258 -2.5627 0.4547 26 1 -0.3633 0.0804 1.0246 27 1 -0.3632 0.8472 -0.5818 28 1 -0.3634 -0.9273 -0.4427 29 1 1.6086 2.0283 0.5138 30 1 3.1500 1.1382 0.5138 31 1 4.0305 4.4437 -0.8504 32 1 2.9685 -3.4568 -1.1699 33 1 1.7313 -5.5762 -1.3333 34 1 -0.0179 -6.9706 -0.3962 35 1 -1.3859 -6.2493 0.4850 36 1 -2.2698 -5.3286 -1.6409 37 1 -0.9017 -6.0498 -2.5221 38 1 -1.5437 -3.8503 0.7876 39 1 -0.3276 -1.7189 0.9535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160944661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -180.640505 kcal Electronic energy + Delta-G solvation = -25393.416346 eV Core-core repulsion = 21078.285109 eV Total energy + Delta-G solvation = -4315.131236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.00989 -48.52434 -48.49101 -41.36989 -39.54969 -36.78092 -35.69213 -34.72773 -32.12290 -31.70882 -29.66725 -27.87172 -27.06664 -25.16372 -23.69362 -23.52278 -22.21489 -20.65274 -19.45290 -19.32017 -18.73359 -18.27729 -18.18611 -17.45991 -16.69349 -16.51078 -16.13554 -15.91194 -15.46341 -15.40631 -15.31082 -14.94196 -14.71920 -14.66743 -14.61501 -14.43746 -14.30307 -14.25919 -14.01692 -13.84195 -13.48102 -13.22395 -13.01874 -12.95366 -12.70294 -12.47650 -12.30567 -12.23304 -12.11759 -11.75833 -11.68010 -10.75003 -10.67114 -9.89081 -9.71973 -9.46406 -8.25657 -6.41293 -0.07098 0.43443 1.35171 1.38412 1.48809 1.82064 1.92775 2.26837 2.41045 2.79391 2.93017 3.03848 3.17015 3.18709 3.61862 3.83941 3.94170 4.02323 4.12631 4.15878 4.32158 4.48149 4.49951 4.58365 4.61566 4.81173 4.83798 4.92225 4.95922 5.08869 5.12062 5.17063 5.35138 5.46957 5.51867 5.57152 5.78146 5.96954 6.01315 6.64015 6.69865 7.22103 7.37730 8.81722 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.002496 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.466507 B =11213.275399 C =11551.889974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.600 5.600 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.533 3.467 13 O -0.601 6.601 14 C -0.144 4.144 15 C -0.084 4.084 16 C -0.116 4.116 17 C -0.058 4.058 18 C -0.079 4.079 19 C -0.157 4.157 20 C 0.452 3.548 21 F -0.189 7.189 22 F -0.194 7.194 23 F -0.191 7.191 24 C -0.112 4.112 25 C -0.099 4.099 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.029 0.971 30 H -0.001 1.001 31 H 0.268 0.732 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 -22.824 -0.443 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.330 5.330 3 C 0.136 3.864 4 C -0.585 4.585 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.323 3.677 13 O -0.484 6.484 14 C -0.147 4.147 15 C -0.103 4.103 16 C -0.133 4.133 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.195 4.195 20 C 0.398 3.602 21 F -0.170 7.170 22 F -0.175 7.175 23 F -0.173 7.173 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.170 0.830 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.184 0.816 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.441 -22.642 -0.351 27.983 hybrid contribution 0.815 0.713 -0.747 1.316 sum -15.626 -21.928 -1.098 26.948 Atomic orbital electron populations 1.22623 0.78055 1.04651 1.02730 1.48069 1.08522 1.06162 1.70255 1.18825 0.91225 0.80050 0.96311 1.21678 1.37281 1.06737 0.92842 0.92946 1.25887 0.94705 0.96301 1.02229 1.70051 1.38733 1.14786 1.33134 0.85374 0.78211 0.78220 0.78763 1.18559 1.20491 1.19810 1.19160 0.86922 0.85117 0.76480 1.90692 1.16430 1.88175 1.53093 1.19951 0.96964 0.92948 1.04865 1.21230 0.99443 0.92559 0.97090 1.21208 0.94902 0.96864 1.00352 1.20013 0.93919 0.95643 0.96285 1.20603 0.99010 0.94694 0.97338 1.22934 1.01360 0.92506 1.02703 1.20865 0.78007 0.88329 0.72959 1.93181 1.73103 1.96662 1.54080 1.93185 1.77733 1.96994 1.49616 1.93177 1.66995 1.60945 1.96167 1.21384 1.01362 0.90919 0.99239 1.22073 0.91914 0.99997 0.97769 0.90081 0.91558 0.87595 0.95301 0.98321 0.92261 0.87222 0.83035 0.88707 0.87909 0.85420 0.86151 0.81578 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.83 8.80 127.77 1.12 2.95 16 2 N -0.60 -26.61 2.86 -854.57 -2.44 -29.06 16 3 C 0.26 14.26 5.21 85.63 0.45 14.71 16 4 C -0.55 -32.16 9.39 25.60 0.24 -31.92 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.46 5.46 84.65 0.46 0.93 16 7 N -0.93 -56.61 13.29 21.44 0.28 -56.32 16 8 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.53 24.09 7.44 86.79 0.65 24.73 16 13 O -0.60 -33.54 16.31 -3.90 -0.06 -33.60 16 14 C -0.14 -4.67 5.47 -20.09 -0.11 -4.78 16 15 C -0.08 -2.43 9.60 22.53 0.22 -2.21 16 16 C -0.12 -2.18 9.68 22.23 0.22 -1.96 16 17 C -0.06 -0.82 5.14 -19.80 -0.10 -0.92 16 18 C -0.08 -0.65 5.09 29.85 0.15 -0.49 16 19 C -0.16 -1.14 5.24 30.59 0.16 -0.98 16 20 C 0.45 5.07 3.16 71.98 0.23 5.30 16 21 F -0.19 -2.40 16.80 44.97 0.76 -1.64 16 22 F -0.19 -2.75 17.32 44.97 0.78 -1.98 16 23 F -0.19 -2.59 16.80 44.97 0.76 -1.84 16 24 C -0.11 -1.64 9.68 22.23 0.22 -1.42 16 25 C -0.10 -2.21 7.44 22.52 0.17 -2.05 16 26 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 27 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 28 H 0.11 2.55 4.72 -2.39 -0.01 2.54 16 29 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.00 -0.09 7.37 -2.39 -0.02 -0.10 16 31 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.11 3.57 7.95 -2.91 -0.02 3.54 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.09 0.71 7.75 -2.39 -0.02 0.69 16 35 H 0.10 0.62 7.74 -2.38 -0.02 0.60 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.16 3.03 4.80 -2.91 -0.01 3.02 16 Total: -1.00 -79.15 343.50 7.24 -71.91 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.08 Total: 3.47 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 4.06 Total: 1.88 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.16 Total: -85.38 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.06 Total: -33.60 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 2.29 Total: -5.45 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.15 7.24 -71.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160944661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.732 kcal (2) G-P(sol) polarization free energy of solvation -79.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds