Wall clock time and date at job start Tue Mar 31 2020 11:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47599 * 2 1 4 4 C 1.50709 * 109.46649 * 119.99575 * 2 1 3 5 5 H 1.08003 * 119.99435 * 119.99715 * 4 2 1 6 6 C 1.37875 * 120.00364 * 299.99543 * 4 2 1 7 7 N 1.31517 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46796 * 60.00456 * 8 6 4 10 10 H 1.48494 * 109.47228 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47291 * 300.00266 * 8 6 4 12 12 N 1.46494 * 109.46977 * 239.99320 * 2 1 3 13 13 C 1.34775 * 119.99799 * 85.00502 * 12 2 1 14 14 O 1.21284 * 119.99991 * 0.02562 * 13 12 2 15 15 C 1.50705 * 120.00029 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.46843 * 186.27497 * 15 13 12 17 17 H 1.08994 * 109.47514 * 306.02003 * 16 15 13 18 18 C 1.50699 * 109.47257 * 66.02713 * 16 15 13 19 19 C 1.38237 * 120.00229 * 59.71680 * 18 16 15 20 20 C 1.38235 * 119.99675 * 179.79020 * 19 18 16 21 21 C 1.38232 * 120.00268 * 0.44576 * 20 19 18 22 22 C 1.38235 * 119.99993 * 359.81053 * 21 20 19 23 23 C 1.38237 * 119.99631 * 239.99779 * 18 16 15 24 24 C 1.53001 * 109.46752 * 186.02288 * 16 15 13 25 25 F 1.39903 * 109.47399 * 65.19861 * 24 16 15 26 26 F 1.39907 * 109.47177 * 305.19676 * 24 16 15 27 27 F 1.39904 * 109.47149 * 185.19843 * 24 16 15 28 28 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46990 * 300.00493 * 1 2 3 30 30 H 1.08994 * 109.46670 * 59.99709 * 1 2 3 31 31 H 0.97004 * 119.99539 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00564 * 265.00136 * 12 2 1 33 33 H 1.08997 * 109.47099 * 66.27501 * 15 13 12 34 34 H 1.09001 * 109.47234 * 306.27828 * 15 13 12 35 35 H 1.08005 * 119.99717 * 0.02562 * 19 18 16 36 36 H 1.08007 * 119.99752 * 180.27963 * 20 19 18 37 37 H 1.08000 * 120.00081 * 179.83964 * 21 20 19 38 38 H 1.08003 * 120.00094 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.99984 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.8062 -1.1208 4.0084 10 1 1.8259 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0080 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0185 -2.3570 14 8 1.8592 1.1585 -2.4115 15 6 2.6500 -0.7289 -3.5873 16 6 2.8501 0.2850 -4.7156 17 1 1.9285 0.8468 -4.8671 18 6 3.9618 1.2335 -4.3473 19 6 5.2319 0.7471 -4.0997 20 6 6.2525 1.6176 -3.7661 21 6 6.0010 2.9736 -3.6711 22 6 4.7298 3.4594 -3.9134 23 6 3.7101 2.5894 -4.2513 24 6 3.2156 -0.4527 -6.0052 25 9 2.1360 -1.2444 -6.4116 26 9 4.3307 -1.2662 -5.7771 27 9 3.5142 0.4779 -7.0062 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 0.7082 1.1611 3.4844 32 1 2.2490 -1.6319 -1.1525 33 1 1.9217 -1.4783 -3.8973 34 1 3.5992 -1.2155 -3.3634 35 1 5.4275 -0.3127 -4.1707 36 1 7.2458 1.2381 -3.5771 37 1 6.7979 3.6534 -3.4079 38 1 4.5332 4.5188 -3.8388 39 1 2.7169 2.9689 -4.4407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171293772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:24 Heat of formation + Delta-G solvation = -176.763085 kcal Electronic energy + Delta-G solvation = -26930.286629 eV Core-core repulsion = 22615.323530 eV Total energy + Delta-G solvation = -4314.963099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.19576 -47.68261 -47.63994 -39.74164 -38.54339 -35.17519 -34.27717 -32.41728 -30.81776 -30.02305 -28.85590 -26.72587 -25.26782 -23.48240 -22.54217 -21.61627 -20.58925 -19.45467 -18.58230 -18.51118 -17.63526 -16.90344 -16.68383 -15.60327 -15.39463 -15.26839 -14.84159 -14.63100 -14.43869 -14.34845 -14.12183 -14.06494 -13.84868 -13.78485 -13.21249 -13.18639 -13.04167 -12.76679 -12.42290 -12.22473 -11.98968 -11.67636 -11.55940 -11.10398 -10.99196 -10.92824 -10.85343 -10.74408 -10.34800 -10.25393 -9.14462 -9.07519 -8.78332 -8.67138 -8.56940 -7.93963 -6.14229 -4.23577 1.33903 1.54601 2.67567 3.24101 3.29359 3.29965 3.32982 3.58754 3.74303 3.91591 4.07233 4.22174 4.41707 4.65586 4.72659 4.94128 5.09205 5.17466 5.18535 5.23765 5.45201 5.53324 5.62149 5.64727 5.76892 6.03014 6.13870 6.51954 6.60581 6.64734 6.79744 6.93223 7.07736 7.12243 7.42282 7.52493 7.66673 7.88800 8.12723 8.62042 8.74842 9.07116 9.43930 10.91674 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003929 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.229852 B = 7124.837320 C = 7857.681360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.508 3.492 14 O -0.546 6.546 15 C -0.144 4.144 16 C -0.072 4.072 17 H 0.130 0.870 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.069 4.069 24 C 0.457 3.543 25 F -0.183 7.183 26 F -0.181 7.181 27 F -0.179 7.179 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -1.222 -15.990 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.425 6.425 15 C -0.184 4.184 16 C -0.092 4.092 17 H 0.148 0.852 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.087 4.087 24 C 0.403 3.597 25 F -0.164 7.164 26 F -0.163 7.163 27 F -0.161 7.161 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.529 -0.264 -15.872 17.164 hybrid contribution 0.425 -1.132 0.780 1.439 sum 6.954 -1.395 -15.092 16.675 Atomic orbital electron populations 1.22077 0.98483 0.99090 1.00886 1.18727 0.90951 0.93951 0.79899 0.93360 1.21178 1.32531 1.13231 0.90359 0.92169 1.24878 0.94788 0.94937 0.99037 1.69893 1.35775 1.22432 1.23991 0.86512 0.79176 0.79605 0.81834 1.20179 1.21116 1.20153 1.46488 1.64983 1.13547 1.10446 1.19922 0.78953 0.87497 0.84444 1.90662 1.51172 1.15649 1.85004 1.21797 1.04434 0.98143 0.94023 1.21131 1.01448 0.96469 0.90108 0.85178 1.19136 0.92869 0.93776 1.02711 1.21143 0.92511 1.00149 0.99174 1.21035 0.98977 0.93511 1.00608 1.21168 0.97003 0.95586 0.99382 1.21120 0.93070 0.99792 1.00143 1.20962 0.99028 0.92096 0.96565 1.20555 0.74477 0.77709 0.86936 1.93184 1.55559 1.75733 1.91936 1.93139 1.54058 1.74529 1.94527 1.93187 1.93314 1.65551 1.63998 0.95500 0.89177 0.96666 0.92521 0.77904 0.87913 0.88138 0.85640 0.86079 0.86220 0.85973 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.71 -14.09 5.07 -54.93 -0.28 -14.37 16 13 C 0.51 9.36 7.48 -10.98 -0.08 9.28 16 14 O -0.55 -11.83 14.17 5.55 0.08 -11.75 16 15 C -0.14 -1.91 4.78 -27.88 -0.13 -2.04 16 16 C -0.07 -0.93 1.73 -91.77 -0.16 -1.09 16 17 H 0.13 1.69 7.56 -51.93 -0.39 1.30 16 18 C -0.08 -1.19 3.48 -104.62 -0.36 -1.56 16 19 C -0.11 -1.49 8.42 -39.58 -0.33 -1.82 16 20 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 21 C -0.11 -1.41 10.05 -39.58 -0.40 -1.81 16 22 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.07 -0.99 8.84 -39.58 -0.35 -1.34 16 24 C 0.46 5.47 2.66 37.16 0.10 5.56 16 25 F -0.18 -2.17 16.91 2.25 0.04 -2.13 16 26 F -0.18 -2.12 14.43 2.25 0.03 -2.09 16 27 F -0.18 -2.26 16.89 2.25 0.04 -2.22 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.40 6.07 -51.92 -0.32 2.09 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 33 H 0.10 1.15 7.80 -51.93 -0.40 0.74 16 34 H 0.10 1.19 6.91 -51.93 -0.36 0.83 16 35 H 0.13 1.49 5.95 -52.48 -0.31 1.18 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.13 1.73 7.95 -52.49 -0.42 1.32 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -29.91 337.88 -6.73 -36.64 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.60 Total: 7.55 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.74 Total: -8.14 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.35 Total: -38.40 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.91 -6.73 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171293772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.119 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds