Wall clock time and date at job start Tue Mar 31 2020 10:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 C 1.50706 * 119.99718 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46787 * 270.02092 * 22 21 20 24 24 F 1.39899 * 109.47297 * 30.01858 * 22 21 20 25 25 F 1.39895 * 109.47074 * 150.02359 * 22 21 20 26 26 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 30 30 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 31 31 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 34 34 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 35 35 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 36 36 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 37 37 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 38 38 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 39 39 H 1.07996 * 120.00369 * 359.97364 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3097 2.1552 12 1 6.6135 0.8418 0.0281 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 6 -3.0538 7.0793 -1.4300 23 9 -3.0573 7.9699 -2.5089 24 9 -4.2810 7.1512 -0.7620 25 9 -2.0222 7.4190 -0.5483 26 6 -1.5573 5.1735 -2.0581 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0617 2.9496 33 1 2.2720 2.1231 -1.9978 34 1 0.7282 4.1540 -2.8668 35 1 0.0682 2.6145 -3.4688 36 1 -2.2921 2.1009 -3.2399 37 1 -4.5757 2.9943 -3.0183 38 1 -4.9261 5.2861 -2.1883 39 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183830864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:04 Heat of formation + Delta-G solvation = -176.233095 kcal Electronic energy + Delta-G solvation = -26134.528783 eV Core-core repulsion = 21819.588666 eV Total energy + Delta-G solvation = -4314.940117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.22933 -47.73887 -47.69763 -39.91588 -38.62105 -35.14241 -33.15273 -32.37492 -31.83038 -30.92120 -28.07314 -26.57234 -26.12136 -23.15266 -22.51473 -21.75028 -20.25963 -19.34625 -18.56944 -18.43705 -18.13219 -17.09875 -16.39473 -15.82184 -15.60314 -15.29488 -14.68130 -14.63139 -14.51288 -14.31599 -14.17321 -14.11529 -13.88813 -13.84808 -13.27412 -13.22872 -12.72951 -12.69785 -12.62183 -12.46638 -11.75619 -11.44670 -11.40195 -11.25511 -11.18097 -10.97539 -10.85664 -10.34170 -10.20149 -9.65502 -9.31167 -9.21625 -9.06394 -8.78212 -8.51468 -7.84789 -6.14364 -4.24034 0.87040 1.16348 2.58466 3.22925 3.29575 3.30840 3.35371 3.36206 3.64128 3.93899 4.14975 4.34293 4.40497 4.60373 4.71349 4.87361 5.12694 5.16483 5.18125 5.35450 5.48885 5.54243 5.69812 5.83219 6.03662 6.16424 6.36095 6.38208 6.42406 6.62813 6.67149 7.00398 7.17372 7.34307 7.43052 7.59493 7.70899 7.87968 8.16094 8.64028 8.75616 9.11193 9.43625 10.90890 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003101 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.514607 B = 9026.386914 C = 9665.645017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.541 6.541 16 C -0.111 4.111 17 C -0.052 4.052 18 C -0.073 4.073 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.183 4.183 22 C 0.509 3.491 23 F -0.180 7.180 24 F -0.179 7.179 25 F -0.175 7.175 26 C -0.057 4.057 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 8.275 -12.444 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.419 6.419 16 C -0.151 4.151 17 C -0.053 4.053 18 C -0.091 4.091 19 C -0.138 4.138 20 C -0.096 4.096 21 C -0.185 4.185 22 C 0.455 3.545 23 F -0.161 7.161 24 F -0.160 7.160 25 F -0.156 7.156 26 C -0.075 4.075 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.619 8.176 -11.540 18.955 hybrid contribution 1.295 0.187 -0.067 1.310 sum -11.325 8.363 -11.607 18.246 Atomic orbital electron populations 1.21828 0.98364 0.97950 1.01195 1.21932 0.92578 0.99861 1.02253 1.18779 0.94167 0.89147 0.81034 0.93335 1.21235 0.90733 1.39189 1.06201 0.92099 1.24887 0.98591 0.94769 0.95414 1.69892 1.35147 1.37524 1.09348 0.86466 0.84873 0.77669 0.78190 1.20559 1.21077 1.19856 1.46497 1.14539 1.56051 1.18585 1.20144 0.82964 0.79676 0.88736 1.90705 1.51322 1.59508 1.40343 1.20805 0.93898 1.01799 0.98566 1.19327 0.94913 0.93104 0.97929 1.21255 0.92080 0.99270 0.96508 1.21068 0.97391 0.95075 1.00219 1.20859 0.97828 0.94238 0.96655 1.19858 0.96375 0.93037 1.09208 1.18330 0.73863 0.86905 0.75420 1.93209 1.96199 1.71214 1.55512 1.93177 1.44628 1.96891 1.81328 1.93213 1.59011 1.93522 1.69876 1.20769 0.95518 0.95738 0.95476 0.94336 0.95936 0.93187 0.95077 0.88327 0.92550 0.77969 0.88174 0.88136 0.85195 0.84934 0.85030 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.52 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.71 -13.71 5.02 -54.93 -0.28 -13.98 16 14 C 0.50 9.05 6.39 -10.99 -0.07 8.98 16 15 O -0.54 -11.92 13.17 5.56 0.07 -11.85 16 16 C -0.11 -1.38 5.83 -29.03 -0.17 -1.55 16 17 C -0.05 -0.67 4.37 -104.62 -0.46 -1.13 16 18 C -0.07 -0.84 9.70 -39.58 -0.38 -1.23 16 19 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 20 C -0.08 -0.85 9.40 -39.58 -0.37 -1.22 16 21 C -0.18 -2.29 5.45 -104.62 -0.57 -2.86 16 22 C 0.51 6.26 3.36 36.01 0.12 6.39 16 23 F -0.18 -2.14 17.30 2.25 0.04 -2.10 16 24 F -0.18 -2.18 16.46 2.25 0.04 -2.14 16 25 F -0.17 -2.37 16.46 2.25 0.04 -2.34 16 26 C -0.06 -0.75 9.05 -39.59 -0.36 -1.11 16 27 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.40 8.54 -40.82 -0.35 6.05 16 34 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.16 7.60 -52.49 -0.40 0.76 16 39 H 0.13 1.66 7.60 -52.49 -0.40 1.27 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -30.21 339.79 -7.02 -37.23 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.62 Total: 5.71 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.04 Total: -7.15 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.35 Total: -37.78 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.21 -7.02 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.004 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds