Wall clock time and date at job start Tue Mar 31 2020 10:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 C 1.50706 * 119.99718 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46787 * 270.02092 * 22 21 20 24 24 F 1.39899 * 109.47297 * 30.01858 * 22 21 20 25 25 F 1.39895 * 109.47074 * 150.02359 * 22 21 20 26 26 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 30 30 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 31 31 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 34 34 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 35 35 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 36 36 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 37 37 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 38 38 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 39 39 H 1.07996 * 120.00369 * 359.97364 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3097 2.1552 12 1 6.6135 0.8418 0.0281 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 6 -3.0538 7.0793 -1.4300 23 9 -3.0573 7.9699 -2.5089 24 9 -4.2810 7.1512 -0.7620 25 9 -2.0222 7.4190 -0.5483 26 6 -1.5573 5.1735 -2.0581 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0617 2.9496 33 1 2.2720 2.1231 -1.9978 34 1 0.7282 4.1540 -2.8668 35 1 0.0682 2.6145 -3.4688 36 1 -2.2921 2.1009 -3.2399 37 1 -4.5757 2.9943 -3.0183 38 1 -4.9261 5.2861 -2.1883 39 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183830864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:03 Heat of formation + Delta-G solvation = -193.273183 kcal Electronic energy + Delta-G solvation = -26135.267696 eV Core-core repulsion = 21819.588666 eV Total energy + Delta-G solvation = -4315.679031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.21504 -48.73973 -48.67626 -41.05938 -39.89792 -36.90756 -34.32176 -34.11338 -32.83540 -32.52989 -29.48459 -28.14977 -27.05105 -24.99006 -23.46859 -22.87208 -21.78281 -21.01016 -19.55097 -19.41854 -19.22665 -18.68167 -17.40696 -17.27041 -17.10195 -16.67087 -16.07687 -15.90163 -15.60219 -15.45443 -15.25696 -15.13474 -14.90348 -14.84540 -14.73699 -14.58761 -14.14680 -13.96765 -13.65620 -13.57245 -13.45139 -13.14981 -12.90089 -12.77907 -12.66228 -12.27072 -12.14524 -12.10493 -11.99341 -11.54859 -11.02811 -10.68446 -10.49629 -10.14476 -9.80705 -9.55875 -8.14657 -6.31776 -0.02113 0.27640 1.45231 1.45836 1.55998 1.62510 1.95035 2.33979 2.45478 2.69389 2.89309 2.99359 3.15168 3.39810 3.65318 3.87193 4.05239 4.21758 4.28243 4.32902 4.51701 4.52643 4.60990 4.64541 4.79096 4.81155 4.95757 5.10020 5.16755 5.29527 5.32481 5.47239 5.49175 5.59312 5.67675 5.82632 5.84202 5.97632 6.20771 6.77934 7.07592 7.36411 7.68460 8.90397 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003101 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.514607 B = 9026.386914 C = 9665.645017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.707 5.707 14 C 0.497 3.503 15 O -0.584 6.584 16 C -0.096 4.096 17 C -0.071 4.071 18 C -0.079 4.079 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.198 4.198 22 C 0.511 3.489 23 F -0.178 7.178 24 F -0.178 7.178 25 F -0.186 7.186 26 C -0.075 4.075 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 8.026 -14.771 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.356 5.356 14 C 0.284 3.716 15 O -0.465 6.465 16 C -0.135 4.135 17 C -0.072 4.072 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.199 4.199 22 C 0.457 3.543 23 F -0.159 7.159 24 F -0.160 7.160 25 F -0.167 7.167 26 C -0.094 4.094 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.763 7.947 -13.919 20.488 hybrid contribution 1.251 0.306 0.665 1.449 sum -11.513 8.252 -13.253 19.398 Atomic orbital electron populations 1.21657 0.96859 0.98997 1.00326 1.21770 0.93835 0.99184 1.01191 1.18310 0.93397 0.89176 0.81649 0.98791 1.21624 0.91659 1.38768 1.06492 0.90943 1.25758 1.03130 0.94476 0.95157 1.70053 1.36997 1.38474 1.09901 0.85417 0.79406 0.77292 0.78643 1.20643 1.21126 1.18281 1.46253 1.15741 1.56219 1.17433 1.21098 0.81670 0.78592 0.90203 1.90691 1.52410 1.60850 1.42516 1.20765 0.94226 1.02759 0.95787 1.19463 0.95522 0.93241 0.98936 1.21590 0.92209 0.99920 0.95999 1.21466 0.98070 0.94971 0.98949 1.21200 0.98312 0.94457 0.95789 1.19976 0.96809 0.93162 1.09993 1.18359 0.73564 0.87140 0.75252 1.93209 1.96170 1.71208 1.55308 1.93172 1.44529 1.96913 1.81365 1.93188 1.59581 1.93642 1.70319 1.20884 0.95847 0.96345 0.96284 0.93131 0.93786 0.96048 0.93885 0.91430 0.92729 0.76036 0.85913 0.84620 0.83362 0.81803 0.83046 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.83 2.24 44.25 0.10 13.93 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.06 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.16 11.29 21.45 0.24 -51.91 16 9 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 13 N -0.71 -26.84 5.02 -446.10 -2.24 -29.08 16 14 C 0.50 17.55 6.39 87.66 0.56 18.11 16 15 O -0.58 -26.05 13.17 -3.01 -0.04 -26.09 16 16 C -0.10 -2.16 5.83 29.10 0.17 -1.99 16 17 C -0.07 -1.71 4.37 -19.86 -0.09 -1.80 16 18 C -0.08 -1.62 9.70 22.27 0.22 -1.41 16 19 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 20 C -0.08 -1.58 9.40 22.27 0.21 -1.37 16 21 C -0.20 -4.77 5.45 -19.87 -0.11 -4.88 16 22 C 0.51 12.36 3.36 71.24 0.24 12.60 16 23 F -0.18 -4.10 17.30 44.97 0.78 -3.32 16 24 F -0.18 -4.22 16.46 44.97 0.74 -3.48 16 25 F -0.19 -5.10 16.46 44.97 0.74 -4.36 16 26 C -0.08 -1.93 9.05 22.27 0.20 -1.73 16 27 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.02 1.01 7.85 -2.39 -0.02 0.99 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.68 5.95 -2.39 -0.01 3.67 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.40 12.59 8.54 -92.71 -0.79 11.80 16 34 H 0.12 2.22 8.08 -2.39 -0.02 2.20 16 35 H 0.14 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.16 1.82 8.06 -2.92 -0.02 1.80 16 38 H 0.15 2.30 7.60 -2.91 -0.02 2.28 16 39 H 0.13 3.25 7.60 -2.91 -0.02 3.23 16 Total: -1.00 -67.73 339.79 5.73 -62.01 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.30 Total: 20.10 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 3.18 Total: -7.47 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.00 Total: -80.99 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 9 Polarization: -13.43 SS G_CDS: 2.26 Total: -11.17 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -67.73 5.73 -62.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.268 kcal (2) G-P(sol) polarization free energy of solvation -67.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds