Wall clock time and date at job start Tue Mar 31 2020 11:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21590 * 120.00051 * 0.02562 * 13 12 2 15 15 C 1.47575 * 120.00129 * 179.97438 * 13 12 2 16 16 C 1.39790 * 120.04447 * 359.72828 * 15 13 12 17 17 C 1.37563 * 120.00231 * 179.71564 * 16 15 13 18 18 C 1.39589 * 120.09801 * 0.55819 * 17 16 15 19 19 C 1.48291 * 119.95659 * 179.74123 * 18 17 16 20 20 C 1.39763 * 120.92458 * 179.69413 * 19 18 17 21 21 N 1.32190 * 118.94263 * 179.78642 * 20 19 18 22 22 C 1.31835 * 120.95095 * 0.48338 * 21 20 19 23 23 N 1.31836 * 122.05569 * 359.76672 * 22 21 20 24 24 C 1.32181 * 120.94834 * 359.97438 * 23 22 21 25 25 C 1.39356 * 120.09471 * 359.71848 * 18 17 16 26 26 C 1.38035 * 119.99257 * 359.97438 * 25 18 17 27 27 F 1.35105 * 120.04552 * 179.97438 * 26 25 18 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 33 33 H 1.08006 * 119.99812 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.95440 * 180.25549 * 17 16 15 35 35 H 1.07996 * 120.52939 * 0.02807 * 20 19 18 36 36 H 1.08000 * 118.97394 * 179.75325 * 22 21 20 37 37 H 1.08001 * 120.52752 * 179.97438 * 24 23 22 38 38 H 1.08002 * 120.00082 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8574 1.1614 2.4118 15 6 2.6383 -0.7140 3.5623 16 6 2.9650 -2.0719 3.5022 17 6 3.4285 -2.7182 4.6246 18 6 3.5622 -2.0229 5.8276 19 6 4.0566 -2.7241 7.0371 20 6 4.2043 -2.0463 8.2504 21 7 4.6442 -2.7108 9.3050 22 6 4.9504 -3.9903 9.2209 23 7 4.8307 -4.6659 8.0952 24 6 4.3934 -4.0800 6.9940 25 6 3.2321 -0.6706 5.8936 26 6 2.7728 -0.0168 4.7681 27 9 2.4520 1.2942 4.8310 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7096 1.1617 -3.4844 32 1 2.2490 -1.6318 1.1527 33 1 2.8576 -2.6125 2.5734 34 1 3.6846 -3.7662 4.5763 35 1 3.9591 -0.9972 8.3261 36 1 5.3108 -4.5010 10.1017 37 1 4.2983 -4.6399 6.0753 38 1 3.3366 -0.1341 6.8251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185785426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:18 Heat of formation + Delta-G solvation = -6.603101 kcal Electronic energy + Delta-G solvation = -24535.047034 eV Core-core repulsion = 20678.151812 eV Total energy + Delta-G solvation = -3856.895222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.79900 -41.49621 -39.70114 -38.21514 -34.89679 -34.25114 -33.89204 -32.46387 -31.05192 -30.17102 -28.60814 -25.54242 -25.31670 -25.25968 -22.90585 -22.58745 -21.16482 -19.66898 -18.61883 -17.94194 -17.86295 -17.35912 -16.30026 -15.90014 -15.68998 -15.32937 -15.21097 -15.15627 -14.85392 -14.39731 -14.14197 -14.03766 -13.89092 -13.39164 -13.08130 -12.72008 -12.54621 -12.43294 -11.78262 -11.75964 -11.31307 -11.30467 -11.15835 -11.00828 -10.81838 -10.53066 -10.37007 -10.28520 -9.68844 -9.25842 -9.15794 -9.10406 -8.67102 -8.60371 -8.00213 -6.17103 -4.27066 -0.20831 0.60469 0.93258 1.06575 2.90800 3.21089 3.28156 3.29950 3.43069 3.62478 3.70091 3.75918 3.87979 3.89755 4.04090 4.15496 4.27812 4.31562 4.59828 4.70195 4.91871 4.96500 5.11660 5.15884 5.24888 5.35993 5.70516 5.79663 5.86880 5.91614 6.00380 6.43620 6.53746 6.77363 6.90610 7.08531 7.34680 7.47512 7.58994 7.62411 7.84689 8.08806 8.52588 8.69880 8.97143 9.40291 10.88898 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.002707 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.960118 B =10340.675402 C =11298.989602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.538 3.462 14 O -0.535 6.535 15 C -0.150 4.150 16 C -0.054 4.054 17 C -0.126 4.126 18 C -0.003 4.003 19 C -0.147 4.147 20 C 0.160 3.840 21 N -0.516 5.516 22 C 0.290 3.710 23 N -0.516 5.516 24 C 0.162 3.838 25 C -0.156 4.156 26 C 0.162 3.838 27 F -0.110 7.110 28 H 0.027 0.973 29 H 0.015 0.985 30 H 0.092 0.908 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.172 0.828 36 H 0.198 0.802 37 H 0.174 0.826 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -10.281 19.421 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.322 3.678 14 O -0.414 6.414 15 C -0.154 4.154 16 C -0.073 4.073 17 C -0.144 4.144 18 C -0.005 4.005 19 C -0.151 4.151 20 C -0.006 4.006 21 N -0.228 5.228 22 C 0.004 3.996 23 N -0.228 5.228 24 C -0.005 4.005 25 C -0.175 4.175 26 C 0.141 3.859 27 F -0.088 7.088 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.189 0.811 36 H 0.215 0.785 37 H 0.191 0.809 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.319 -9.724 20.099 23.204 hybrid contribution 0.028 -0.252 -1.612 1.632 sum 6.346 -9.976 18.486 21.944 Atomic orbital electron populations 1.22087 0.98237 0.99228 1.01079 1.18817 0.91162 0.94090 0.79626 0.93123 1.21182 1.32691 1.13325 0.90228 0.92021 1.24891 0.94772 0.94928 0.99092 1.69900 1.35717 1.22300 1.23992 0.86430 0.79152 0.79273 0.82139 1.20511 1.21032 1.19830 1.46488 1.64412 1.13484 1.10252 1.17945 0.79688 0.86951 0.83214 1.90816 1.50641 1.15151 1.84796 1.20645 1.04947 0.95147 0.94690 1.21248 0.94531 0.92391 0.99108 1.21101 1.01269 1.00499 0.91548 1.18247 0.98001 0.92259 0.91973 1.20509 1.03002 0.96274 0.95337 1.23471 0.89761 1.00530 0.86873 1.68446 1.12313 1.10310 1.31761 1.25095 0.91531 0.87319 0.95681 1.68448 1.14300 1.40088 0.99987 1.23466 0.89074 0.90881 0.97050 1.21040 1.03635 0.94487 0.98300 1.17518 0.96486 0.78968 0.92949 1.91624 1.89285 1.31243 1.96677 0.95374 0.96542 0.88991 0.92483 0.77861 0.83770 0.84473 0.81079 0.78532 0.80904 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.61 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.70 -14.15 5.02 -55.96 -0.28 -14.43 16 13 C 0.54 10.84 7.73 -12.45 -0.10 10.74 16 14 O -0.54 -13.08 14.98 5.29 0.08 -13.00 16 15 C -0.15 -2.27 5.88 -104.87 -0.62 -2.89 16 16 C -0.05 -0.60 9.52 -39.25 -0.37 -0.97 16 17 C -0.13 -1.08 9.43 -39.32 -0.37 -1.45 16 18 C 0.00 -0.03 5.88 -104.84 -0.62 -0.64 16 19 C -0.15 -1.19 5.91 -104.62 -0.62 -1.80 16 20 C 0.16 1.28 10.70 -16.83 -0.18 1.10 16 21 N -0.52 -4.57 10.42 -14.30 -0.15 -4.72 16 22 C 0.29 2.28 12.27 -92.08 -1.13 1.15 16 23 N -0.52 -4.45 10.42 -14.30 -0.15 -4.60 16 24 C 0.16 1.23 10.70 -16.83 -0.18 1.05 16 25 C -0.16 -1.61 9.41 -39.24 -0.37 -1.97 16 26 C 0.16 2.31 7.27 -39.02 -0.28 2.02 16 27 F -0.11 -1.88 15.53 2.25 0.03 -1.84 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 6.51 6.55 -40.82 -0.27 6.24 16 33 H 0.14 1.35 6.39 -52.48 -0.34 1.01 16 34 H 0.14 0.73 6.28 -52.49 -0.33 0.40 16 35 H 0.17 1.00 6.33 -52.49 -0.33 0.67 16 36 H 0.20 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.17 0.86 6.33 -52.49 -0.33 0.52 16 38 H 0.14 1.08 6.28 -52.49 -0.33 0.76 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -33.03 331.29 -8.37 -41.40 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.44 Total: 3.85 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -5.06 Total: -2.97 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.05 Total: -47.60 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.84 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.03 -8.37 -41.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185785426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.799 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds