Wall clock time and date at job start Tue Mar 31 2020 11:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21590 * 120.00051 * 0.02562 * 13 12 2 15 15 C 1.47575 * 120.00129 * 179.97438 * 13 12 2 16 16 C 1.39790 * 120.04447 * 359.72828 * 15 13 12 17 17 C 1.37563 * 120.00231 * 179.71564 * 16 15 13 18 18 C 1.39589 * 120.09801 * 0.55819 * 17 16 15 19 19 C 1.48291 * 119.95659 * 179.74123 * 18 17 16 20 20 C 1.39763 * 120.92458 * 179.69413 * 19 18 17 21 21 N 1.32190 * 118.94263 * 179.78642 * 20 19 18 22 22 C 1.31835 * 120.95095 * 0.48338 * 21 20 19 23 23 N 1.31836 * 122.05569 * 359.76672 * 22 21 20 24 24 C 1.32181 * 120.94834 * 359.97438 * 23 22 21 25 25 C 1.39356 * 120.09471 * 359.71848 * 18 17 16 26 26 C 1.38035 * 119.99257 * 359.97438 * 25 18 17 27 27 F 1.35105 * 120.04552 * 179.97438 * 26 25 18 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 33 33 H 1.08006 * 119.99812 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.95440 * 180.25549 * 17 16 15 35 35 H 1.07996 * 120.52939 * 0.02807 * 20 19 18 36 36 H 1.08000 * 118.97394 * 179.75325 * 22 21 20 37 37 H 1.08001 * 120.52752 * 179.97438 * 24 23 22 38 38 H 1.08002 * 120.00082 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8574 1.1614 2.4118 15 6 2.6383 -0.7140 3.5623 16 6 2.9650 -2.0719 3.5022 17 6 3.4285 -2.7182 4.6246 18 6 3.5622 -2.0229 5.8276 19 6 4.0566 -2.7241 7.0371 20 6 4.2043 -2.0463 8.2504 21 7 4.6442 -2.7108 9.3050 22 6 4.9504 -3.9903 9.2209 23 7 4.8307 -4.6659 8.0952 24 6 4.3934 -4.0800 6.9940 25 6 3.2321 -0.6706 5.8936 26 6 2.7728 -0.0168 4.7681 27 9 2.4520 1.2942 4.8310 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7096 1.1617 -3.4844 32 1 2.2490 -1.6318 1.1527 33 1 2.8576 -2.6125 2.5734 34 1 3.6846 -3.7662 4.5763 35 1 3.9591 -0.9972 8.3261 36 1 5.3108 -4.5010 10.1017 37 1 4.2983 -4.6399 6.0753 38 1 3.3366 -0.1341 6.8251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185785426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:18 Heat of formation + Delta-G solvation = -27.766903 kcal Electronic energy + Delta-G solvation = -24535.964765 eV Core-core repulsion = 20678.151812 eV Total energy + Delta-G solvation = -3857.812953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95532 -42.10405 -40.98068 -39.42215 -36.77099 -34.88267 -34.80885 -34.19231 -32.00686 -31.34591 -30.08474 -27.36079 -26.35796 -25.93390 -24.01724 -23.48669 -22.57457 -21.32329 -19.75897 -18.75962 -18.61538 -18.38695 -17.76688 -17.29726 -16.86152 -16.76676 -16.32437 -16.10830 -15.82872 -15.74665 -15.49441 -14.89308 -14.68019 -14.57919 -14.34533 -14.17557 -13.79064 -13.55170 -13.47323 -13.01891 -12.88280 -12.73051 -12.56481 -12.30199 -12.14260 -11.99104 -11.91179 -11.35199 -11.12409 -10.90371 -10.60689 -10.27159 -10.01297 -9.88862 -9.44226 -8.17832 -6.35996 -0.97025 0.03824 0.06811 0.25965 1.46362 1.47427 1.57897 1.82862 2.28105 2.50538 2.56532 2.88734 2.93197 3.13047 3.14540 3.21317 3.36089 3.47158 3.52180 3.81522 3.91818 4.00240 4.16886 4.36954 4.56858 4.67109 4.72044 4.86051 4.89697 4.95030 5.05371 5.06699 5.19563 5.33143 5.39968 5.56068 5.60431 5.66318 5.87093 5.90918 6.06791 6.70540 6.85068 7.02432 7.29189 7.45431 8.88806 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.002707 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.960118 B =10340.675402 C =11298.989602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.692 5.692 13 C 0.534 3.466 14 O -0.592 6.592 15 C -0.181 4.181 16 C -0.045 4.045 17 C -0.110 4.110 18 C 0.018 3.982 19 C -0.157 4.157 20 C 0.157 3.843 21 N -0.536 5.536 22 C 0.290 3.710 23 N -0.533 5.533 24 C 0.167 3.833 25 C -0.148 4.148 26 C 0.134 3.866 27 F -0.138 7.138 28 H 0.044 0.956 29 H 0.009 0.991 30 H 0.068 0.932 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.163 0.837 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.222 0.778 37 H 0.203 0.797 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -14.133 20.562 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.322 3.678 14 O -0.474 6.474 15 C -0.185 4.185 16 C -0.064 4.064 17 C -0.127 4.127 18 C 0.016 3.984 19 C -0.161 4.161 20 C -0.008 4.008 21 N -0.249 5.249 22 C 0.004 3.996 23 N -0.246 5.246 24 C 0.001 3.999 25 C -0.166 4.166 26 C 0.113 3.887 27 F -0.116 7.116 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.180 0.820 34 H 0.200 0.800 35 H 0.204 0.796 36 H 0.239 0.761 37 H 0.219 0.781 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.886 -13.628 21.269 26.463 hybrid contribution -0.390 0.873 -1.769 2.010 sum 7.496 -12.756 19.500 24.477 Atomic orbital electron populations 1.21910 0.98174 0.99709 0.99532 1.18400 0.91220 0.91944 0.81721 0.98544 1.21525 1.32738 1.13691 0.90453 0.90319 1.25846 0.94848 0.95559 1.02483 1.70064 1.37013 1.23944 1.24665 0.85291 0.79086 0.77956 0.77682 1.19496 1.21523 1.18527 1.46153 1.64544 1.14242 1.09232 1.18706 0.78315 0.86463 0.84365 1.90773 1.53021 1.17800 1.85832 1.20290 1.08649 0.96932 0.92636 1.21440 0.93622 0.90428 1.00899 1.21531 0.98931 1.02263 0.89989 1.18409 0.95850 0.91504 0.92651 1.20395 1.04314 0.96657 0.94759 1.23819 0.88818 1.01370 0.86832 1.68527 1.13306 1.10917 1.32192 1.25664 0.90294 0.87171 0.96425 1.68552 1.15168 1.40381 1.00491 1.23960 0.87421 0.90694 0.97803 1.21235 1.02433 0.95175 0.97797 1.17910 0.98364 0.78233 0.94170 1.91549 1.89922 1.33279 1.96858 0.93646 0.97232 0.91339 0.92542 0.75611 0.81989 0.80049 0.79577 0.76149 0.78066 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.07 2.56 44.25 0.11 14.18 16 3 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 4 C -0.55 -28.31 8.73 25.60 0.22 -28.08 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 8 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 9 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.69 -28.64 5.02 -449.22 -2.25 -30.89 16 13 C 0.53 22.50 7.73 86.71 0.67 23.17 16 14 O -0.59 -31.12 14.98 -4.00 -0.06 -31.18 16 15 C -0.18 -5.49 5.88 -20.03 -0.12 -5.60 16 16 C -0.05 -0.88 9.52 22.49 0.21 -0.67 16 17 C -0.11 -1.39 9.43 22.44 0.21 -1.18 16 18 C 0.02 0.26 5.88 -20.01 -0.12 0.14 16 19 C -0.16 -1.93 5.91 -19.86 -0.12 -2.05 16 20 C 0.16 2.06 10.70 85.01 0.91 2.97 16 21 N -0.54 -8.07 10.42 -199.15 -2.08 -10.15 16 22 C 0.29 3.70 12.27 180.86 2.22 5.92 16 23 N -0.53 -7.30 10.42 -199.15 -2.08 -9.38 16 24 C 0.17 1.81 10.70 85.01 0.91 2.72 16 25 C -0.15 -2.78 9.41 22.49 0.21 -2.57 16 26 C 0.13 3.86 7.27 22.63 0.16 4.03 16 27 F -0.14 -5.00 15.53 44.97 0.70 -4.30 16 28 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 31 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.41 13.29 6.55 -92.71 -0.61 12.69 16 33 H 0.16 2.48 6.39 -2.91 -0.02 2.47 16 34 H 0.18 0.72 6.28 -2.91 -0.02 0.70 16 35 H 0.19 1.66 6.33 -2.91 -0.02 1.64 16 36 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.20 0.81 6.33 -2.91 -0.02 0.79 16 38 H 0.17 2.19 6.28 -2.91 -0.02 2.17 16 Total: -1.00 -77.14 331.29 3.64 -73.50 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.53 Total: 13.71 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.61 Total: 7.89 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -6.16 Total: -102.74 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.06 Total: -31.18 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.70 Total: -4.30 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -77.14 3.64 -73.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185785426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.733 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds