Wall clock time and date at job start Tue Mar 31 2020 11:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47391 * 240.00159 * 3 2 1 5 5 H 1.48493 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46728 * 120.00016 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 H 1.09001 * 112.83390 * 14.16740 * 15 14 11 17 17 C 1.53851 * 113.58859 * 242.95557 * 15 14 11 18 18 H 1.08996 * 116.26295 * 340.47816 * 17 15 14 19 19 C 1.54421 * 112.95916 * 117.59156 * 17 15 14 20 20 C 1.54442 * 104.15462 * 93.77135 * 19 17 15 21 21 O 1.44364 * 104.81724 * 335.64645 * 20 19 17 22 22 C 1.44243 * 105.54055 * 40.42358 * 21 20 19 23 23 H 1.09001 * 115.49459 * 89.65230 * 22 21 20 24 24 C 1.52844 * 113.69102 * 227.10295 * 22 21 20 25 25 C 1.52985 * 121.03018 * 206.75776 * 24 22 21 26 26 C 1.53917 * 86.80398 * 100.56882 * 25 24 22 27 27 C 1.52968 * 121.08574 * 315.04900 * 24 22 21 28 28 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 30 30 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 31 31 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 32 32 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 33 33 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 34 34 H 1.08993 * 110.49469 * 212.44081 * 19 17 15 35 35 H 1.08994 * 110.49557 * 334.97282 * 19 17 15 36 36 H 1.09008 * 110.37028 * 94.47691 * 20 19 17 37 37 H 1.08995 * 110.37208 * 216.70299 * 20 19 17 38 38 H 1.09002 * 113.65747 * 215.04659 * 25 24 22 39 39 H 1.08996 * 113.65582 * 346.08891 * 25 24 22 40 40 H 1.09003 * 113.58656 * 270.22627 * 26 25 24 41 41 H 1.09003 * 113.65334 * 139.43023 * 26 25 24 42 42 H 1.09006 * 113.65549 * 13.95055 * 27 24 22 43 43 H 1.08995 * 113.66561 * 144.99702 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 1 3.0695 -5.9750 2.0237 17 6 4.8969 -6.2480 0.8045 18 1 5.1688 -6.3221 -0.2484 19 6 5.4775 -5.0328 1.5601 20 6 6.1309 -5.6470 2.8175 21 8 5.4340 -6.8943 3.0239 22 6 5.2521 -7.4576 1.7085 23 1 6.0573 -8.1040 1.3595 24 6 3.8328 -7.9606 1.4467 25 6 3.5665 -9.0822 0.4409 26 6 3.4656 -10.0270 1.6517 27 6 3.0850 -8.7932 2.4896 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8893 32 1 2.8719 -3.6044 -0.8906 33 1 2.6185 -6.9858 -0.7618 34 1 6.2254 -4.5260 0.9503 35 1 4.6824 -4.3418 1.8397 36 1 7.1915 -5.8293 2.6434 37 1 5.9957 -4.9885 3.6754 38 1 2.6294 -8.9677 -0.1039 39 1 4.4137 -9.2953 -0.2109 40 1 4.4186 -10.4719 1.9385 41 1 2.6644 -10.7613 1.5679 42 1 3.5471 -8.7753 3.4767 43 1 2.0131 -8.5979 2.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245566236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:13 Heat of formation + Delta-G solvation = -77.720640 kcal Electronic energy + Delta-G solvation = -25603.210360 eV Core-core repulsion = 21969.842755 eV Total energy + Delta-G solvation = -3633.367605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65742 -37.88114 -36.58216 -35.45227 -35.03842 -33.90742 -32.06716 -31.17820 -30.58404 -25.96904 -25.61817 -25.00259 -24.02765 -22.25161 -21.66876 -20.54111 -18.96167 -18.50890 -17.46478 -17.26018 -16.47584 -16.14864 -15.61456 -15.46563 -15.13311 -15.08759 -14.59404 -14.55927 -14.36205 -13.46979 -13.30175 -12.76019 -12.53561 -12.50128 -12.42170 -12.07052 -11.77101 -11.72859 -11.58893 -11.57504 -11.45661 -11.36642 -11.15993 -11.07716 -10.97885 -10.70360 -10.44248 -10.42313 -10.36029 -10.16235 -9.76275 -9.71968 -9.36708 -8.97397 -8.51183 -6.13341 -4.19104 0.78697 3.11067 3.25706 3.30862 3.32298 3.38407 3.99548 4.20540 4.23535 4.35275 4.40136 4.54134 4.58664 4.67962 4.72680 4.82996 5.01030 5.03277 5.10915 5.13944 5.21807 5.29351 5.37935 5.49503 5.56965 5.62277 5.65762 5.66369 5.71457 5.73404 5.83929 5.94000 5.97821 6.13869 6.21519 6.29896 6.47978 6.67882 7.08083 7.28879 7.35193 7.79024 8.16252 8.83878 9.45593 10.97671 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.004190 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.519847 B = 6681.358234 C = 7824.604390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.588 3.412 12 O -0.968 6.968 13 O -0.965 6.965 14 N -1.112 6.112 15 C 0.155 3.845 16 H 0.122 0.878 17 C -0.153 4.153 18 H 0.117 0.883 19 C -0.155 4.155 20 C 0.047 3.953 21 O -0.355 6.355 22 C 0.077 3.923 23 H 0.095 0.905 24 C -0.104 4.104 25 C -0.111 4.111 26 C -0.139 4.139 27 C -0.122 4.122 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 -17.288 2.472 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.685 3.315 12 O -0.959 6.959 13 O -0.955 6.955 14 N -0.866 5.866 15 C 0.047 3.953 16 H 0.140 0.860 17 C -0.174 4.174 18 H 0.135 0.865 19 C -0.193 4.193 20 C -0.029 4.029 21 O -0.274 6.274 22 C 0.018 3.982 23 H 0.112 0.888 24 C -0.107 4.107 25 C -0.148 4.148 26 C -0.177 4.177 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.246 0.754 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.892 -17.342 2.838 21.218 hybrid contribution 1.265 1.226 -0.556 1.847 sum 13.157 -16.116 2.282 20.929 Atomic orbital electron populations 1.69946 1.06117 1.27310 1.49437 1.25061 0.94957 0.99501 0.94906 0.86539 0.79509 0.82602 0.78669 1.20101 1.21067 1.20089 1.20945 0.92971 0.89751 1.52297 0.92126 1.18956 0.92679 0.90559 0.98860 1.30473 1.13612 1.18053 1.09970 1.05688 0.74799 0.76763 0.74204 1.93552 1.71718 1.85379 1.45233 1.93552 1.71366 1.84950 1.45629 1.55751 1.52220 1.51670 1.26964 1.22081 0.87553 0.96954 0.88719 0.86002 1.24636 0.97270 0.94694 1.00809 0.86544 1.22990 1.01584 0.98016 0.96687 1.23515 0.95812 0.85197 0.98400 1.89010 1.77833 1.35359 1.25197 1.23544 0.95343 0.95741 0.83572 0.88757 1.22875 0.94921 0.93696 0.99173 1.22562 1.02336 0.93950 0.95988 1.22822 1.01691 0.96603 0.96555 1.22667 1.00728 0.94652 0.97886 0.92463 0.94881 0.94867 0.86464 0.86102 0.75437 0.90032 0.89690 0.92257 0.88639 0.89007 0.91099 0.90283 0.91347 0.90627 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.03 6.00 37.16 0.22 -10.81 16 11 S 2.59 46.01 5.43 -107.50 -0.58 45.43 16 12 O -0.97 -20.02 18.08 -57.54 -1.04 -21.06 16 13 O -0.97 -20.11 17.59 -57.54 -1.01 -21.12 16 14 N -1.11 -14.18 5.41 -4.57 -0.02 -14.20 16 15 C 0.16 1.85 3.49 -67.56 -0.24 1.62 16 16 H 0.12 1.65 7.55 -51.93 -0.39 1.26 16 17 C -0.15 -1.50 4.88 -88.30 -0.43 -1.93 16 18 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 19 C -0.16 -1.52 6.65 -25.23 -0.17 -1.69 16 20 C 0.05 0.44 7.63 37.91 0.29 0.73 16 21 O -0.36 -4.04 11.10 -35.23 -0.39 -4.43 16 22 C 0.08 0.74 5.18 -25.68 -0.13 0.61 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 C -0.10 -1.07 0.97 -154.69 -0.15 -1.22 16 25 C -0.11 -0.95 7.11 -26.26 -0.19 -1.13 16 26 C -0.14 -1.18 8.08 -25.78 -0.21 -1.39 16 27 C -0.12 -1.29 7.75 -26.26 -0.20 -1.50 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.12 1.96 7.29 -51.93 -0.38 1.59 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.41 4.34 7.54 -34.47 -0.26 4.08 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.94 7.03 -51.93 -0.37 0.57 16 36 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.81 7.24 -51.93 -0.38 0.43 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -34.52 357.52 -10.51 -45.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.81 Total: 3.70 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -1.75 Total: -29.08 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.71 Total: -39.82 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.44 Total: -46.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 46.01 SS G_CDS: -0.58 Total: 45.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.52 -10.51 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245566236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.698 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds