Wall clock time and date at job start Tue Mar 31 2020 11:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47391 * 240.00159 * 3 2 1 5 5 H 1.48493 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46728 * 120.00016 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 H 1.09001 * 112.83390 * 14.16740 * 15 14 11 17 17 C 1.53851 * 113.58859 * 242.95557 * 15 14 11 18 18 H 1.08996 * 116.26295 * 340.47816 * 17 15 14 19 19 C 1.54421 * 112.95916 * 117.59156 * 17 15 14 20 20 C 1.54442 * 104.15462 * 93.77135 * 19 17 15 21 21 O 1.44364 * 104.81724 * 335.64645 * 20 19 17 22 22 C 1.44243 * 105.54055 * 40.42358 * 21 20 19 23 23 H 1.09001 * 115.49459 * 89.65230 * 22 21 20 24 24 C 1.52844 * 113.69102 * 227.10295 * 22 21 20 25 25 C 1.52985 * 121.03018 * 206.75776 * 24 22 21 26 26 C 1.53917 * 86.80398 * 100.56882 * 25 24 22 27 27 C 1.52968 * 121.08574 * 315.04900 * 24 22 21 28 28 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 30 30 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 31 31 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 32 32 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 33 33 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 34 34 H 1.08993 * 110.49469 * 212.44081 * 19 17 15 35 35 H 1.08994 * 110.49557 * 334.97282 * 19 17 15 36 36 H 1.09008 * 110.37028 * 94.47691 * 20 19 17 37 37 H 1.08995 * 110.37208 * 216.70299 * 20 19 17 38 38 H 1.09002 * 113.65747 * 215.04659 * 25 24 22 39 39 H 1.08996 * 113.65582 * 346.08891 * 25 24 22 40 40 H 1.09003 * 113.58656 * 270.22627 * 26 25 24 41 41 H 1.09003 * 113.65334 * 139.43023 * 26 25 24 42 42 H 1.09006 * 113.65549 * 13.95055 * 27 24 22 43 43 H 1.08995 * 113.66561 * 144.99702 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 1 3.0695 -5.9750 2.0237 17 6 4.8969 -6.2480 0.8045 18 1 5.1688 -6.3221 -0.2484 19 6 5.4775 -5.0328 1.5601 20 6 6.1309 -5.6470 2.8175 21 8 5.4340 -6.8943 3.0239 22 6 5.2521 -7.4576 1.7085 23 1 6.0573 -8.1040 1.3595 24 6 3.8328 -7.9606 1.4467 25 6 3.5665 -9.0822 0.4409 26 6 3.4656 -10.0270 1.6517 27 6 3.0850 -8.7932 2.4896 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8893 32 1 2.8719 -3.6044 -0.8906 33 1 2.6185 -6.9858 -0.7618 34 1 6.2254 -4.5260 0.9503 35 1 4.6824 -4.3418 1.8397 36 1 7.1915 -5.8293 2.6434 37 1 5.9957 -4.9885 3.6754 38 1 2.6294 -8.9677 -0.1039 39 1 4.4137 -9.2953 -0.2109 40 1 4.4186 -10.4719 1.9385 41 1 2.6644 -10.7613 1.5679 42 1 3.5471 -8.7753 3.4767 43 1 2.0131 -8.5979 2.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245566236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:13 Heat of formation + Delta-G solvation = -102.952435 kcal Electronic energy + Delta-G solvation = -25604.304493 eV Core-core repulsion = 21969.842755 eV Total energy + Delta-G solvation = -3634.461737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44858 -38.63412 -38.17611 -37.04521 -36.00498 -35.89722 -33.16443 -32.97971 -31.34488 -27.60075 -26.71403 -25.80547 -24.86330 -23.59465 -22.95709 -21.34819 -20.35842 -19.37393 -19.09837 -18.28028 -18.07340 -17.08156 -16.86400 -16.74204 -16.54466 -16.21164 -15.91660 -15.45814 -15.35194 -14.98961 -14.50233 -14.26325 -13.74280 -13.69557 -13.31559 -13.25700 -13.22226 -13.15010 -12.90745 -12.86428 -12.80432 -12.59619 -12.37936 -12.27806 -12.21389 -12.12549 -11.93368 -11.72269 -11.45447 -11.17799 -11.13109 -10.93182 -10.63707 -10.49747 -10.09370 -8.25545 -6.39711 -0.70225 1.40965 1.44414 1.52521 1.81008 2.38155 2.64969 2.77525 3.07998 3.19201 3.24967 3.45077 3.54184 3.81150 3.84777 3.93878 3.96517 4.06046 4.10873 4.21009 4.31544 4.35666 4.41081 4.56104 4.64441 4.73251 4.81940 4.88549 4.92243 4.95812 5.06927 5.11487 5.12815 5.17270 5.23587 5.26943 5.30164 5.43754 5.56456 5.68230 5.96344 6.05671 6.12669 6.73652 7.30527 8.86658 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.004190 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.519847 B = 6681.358234 C = 7824.604390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.021 3.979 10 C -0.583 4.583 11 S 2.612 3.388 12 O -0.998 6.998 13 O -1.000 7.000 14 N -1.088 6.088 15 C 0.136 3.864 16 H 0.099 0.901 17 C -0.144 4.144 18 H 0.140 0.860 19 C -0.160 4.160 20 C 0.045 3.955 21 O -0.380 6.380 22 C 0.082 3.918 23 H 0.122 0.878 24 C -0.105 4.105 25 C -0.106 4.106 26 C -0.129 4.129 27 C -0.135 4.135 28 H 0.267 0.733 29 H 0.006 0.994 30 H 0.003 0.997 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.426 0.574 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.497 -18.078 1.670 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.018 4.018 10 C -0.715 4.715 11 S 2.709 3.291 12 O -0.989 6.989 13 O -0.990 6.990 14 N -0.848 5.848 15 C 0.028 3.972 16 H 0.117 0.883 17 C -0.164 4.164 18 H 0.158 0.842 19 C -0.198 4.198 20 C -0.031 4.031 21 O -0.300 6.300 22 C 0.024 3.976 23 H 0.139 0.861 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.167 4.167 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.278 -18.140 2.027 23.803 hybrid contribution 0.199 1.397 -0.240 1.432 sum 15.476 -16.743 1.788 22.870 Atomic orbital electron populations 1.70105 1.08141 1.28360 1.50882 1.26119 0.95815 1.03889 0.94387 0.85372 0.78140 0.77292 0.79503 1.18643 1.21140 1.18729 1.21467 0.94003 0.90598 1.51507 0.90407 1.18813 0.93577 0.93185 0.96204 1.30340 1.12629 1.16285 1.12270 1.04644 0.74891 0.76798 0.72727 1.93503 1.73169 1.85860 1.46327 1.93507 1.72875 1.85483 1.47152 1.55176 1.51446 1.50195 1.28001 1.22329 0.88592 0.98719 0.87585 0.88301 1.24657 0.94715 0.94888 1.02146 0.84222 1.23041 1.01563 0.97877 0.97283 1.23636 0.96738 0.84521 0.98221 1.88992 1.78349 1.36213 1.26420 1.23650 0.95397 0.95713 0.82841 0.86094 1.23006 0.95347 0.92707 0.99694 1.22585 1.03135 0.92629 0.96000 1.22804 1.02491 0.95780 0.95585 1.22695 0.99584 0.96844 0.98162 0.92436 0.97591 0.97829 0.84439 0.83561 0.73608 0.88252 0.91545 0.90091 0.88764 0.89482 0.88529 0.88823 0.90897 0.91445 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.58 -21.82 6.00 71.98 0.43 -21.39 16 11 S 2.61 94.20 5.43 -56.49 -0.31 93.89 16 12 O -1.00 -41.82 18.08 -127.65 -2.31 -44.12 16 13 O -1.00 -43.34 17.59 -127.65 -2.25 -45.59 16 14 N -1.09 -26.54 5.41 -168.38 -0.91 -27.45 16 15 C 0.14 3.08 3.49 45.23 0.16 3.23 16 16 H 0.10 2.73 7.55 -2.39 -0.02 2.71 16 17 C -0.14 -2.39 4.88 -9.29 -0.05 -2.43 16 18 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.16 -2.76 6.65 31.57 0.21 -2.55 16 20 C 0.04 0.74 7.63 72.47 0.55 1.29 16 21 O -0.38 -8.01 11.10 -148.98 -1.65 -9.66 16 22 C 0.08 1.35 5.18 31.27 0.16 1.51 16 23 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 24 C -0.11 -1.96 0.97 -52.30 -0.05 -2.01 16 25 C -0.11 -1.51 7.11 30.90 0.22 -1.29 16 26 C -0.13 -1.90 8.08 31.21 0.25 -1.64 16 27 C -0.14 -2.80 7.75 30.90 0.24 -2.56 16 28 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.14 4.55 7.29 -2.40 -0.02 4.53 16 32 H 0.15 4.68 8.14 -2.39 -0.02 4.66 16 33 H 0.43 8.12 7.54 -96.74 -0.73 7.39 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.39 7.03 -2.39 -0.02 1.37 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.33 7.24 -2.39 -0.02 1.31 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.47 8.09 -2.38 -0.02 1.45 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.82 357.52 -1.86 -78.68 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.28 Total: 21.59 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 2.97 Total: -55.51 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -0.63 Total: -84.15 kcal Atomic # 8 Polarization: -93.17 SS G_CDS: -6.21 Total: -99.37 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 94.20 SS G_CDS: -0.31 Total: 93.89 kcal Total: -76.82 -1.86 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245566236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.268 kcal (2) G-P(sol) polarization free energy of solvation -76.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds