Wall clock time and date at job start Tue Mar 31 2020 11:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48499 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47226 * 300.00291 * 3 2 1 6 6 H 1.48505 * 109.47124 * 59.99885 * 3 2 1 7 7 C 1.37872 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47242 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47207 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54441 * 68.37254 * 11 10 9 13 13 O 1.42101 * 110.54060 * 291.62631 * 11 10 9 14 14 N 1.65593 * 104.44926 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99919 * 65.00244 * 14 11 10 16 16 H 1.08992 * 113.54001 * 347.68597 * 15 14 11 17 17 C 1.50986 * 114.52533 * 213.54185 * 15 14 11 18 18 H 1.08997 * 115.45455 * 171.97725 * 17 15 14 19 19 C 1.52803 * 125.72770 * 17.34857 * 17 15 14 20 20 C 1.56109 * 100.07533 * 233.22115 * 19 17 15 21 21 O 1.45470 * 105.74207 * 23.24883 * 20 19 17 22 22 C 1.38640 * 107.04618 * 12.00756 * 21 20 19 23 23 H 1.09002 * 108.92734 * 74.40597 * 22 21 20 24 24 C 1.47465 * 138.25311 * 228.73014 * 22 21 20 25 25 C 1.52728 * 125.41724 * 17.31907 * 24 22 21 26 26 C 1.53985 * 86.70342 * 201.51695 * 25 24 22 27 27 C 1.52704 * 125.48249 * 259.83457 * 24 22 21 28 28 H 0.96998 * 119.99713 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47192 * 60.00212 * 9 7 2 30 30 H 1.08997 * 109.47534 * 299.99829 * 9 7 2 31 31 H 1.08999 * 109.46868 * 59.99996 * 10 9 7 32 32 H 1.08997 * 109.46702 * 300.00321 * 10 9 7 33 33 H 0.97001 * 120.00291 * 244.99196 * 14 11 10 34 34 H 1.09000 * 111.29030 * 115.51159 * 19 17 15 35 35 H 1.09005 * 111.33265 * 350.94724 * 19 17 15 36 36 H 1.08996 * 110.19360 * 264.17932 * 20 19 17 37 37 H 1.08998 * 110.25732 * 142.35410 * 20 19 17 38 38 H 1.09010 * 113.67304 * 315.96107 * 25 24 22 39 39 H 1.09001 * 113.67857 * 87.06209 * 25 24 22 40 40 H 1.09003 * 113.56601 * 269.93888 * 26 25 24 41 41 H 1.08994 * 113.57233 * 139.18439 * 26 25 24 42 42 H 1.09001 * 113.67293 * 272.88837 * 27 24 22 43 43 H 1.08997 * 113.67590 * 43.88915 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6640 -5.4200 1.2354 14 7 2.5205 -6.3926 -0.0020 15 6 3.4189 -6.5234 1.1478 16 1 3.3620 -5.6853 1.8423 17 6 4.8234 -6.9549 0.7999 18 1 5.5394 -6.9258 1.6212 19 6 5.4573 -6.8938 -0.5891 20 6 5.9425 -8.3706 -0.7330 21 8 5.1095 -9.1495 0.1700 22 6 4.0663 -8.3287 0.5704 23 1 3.3600 -8.2272 -0.2536 24 6 3.4031 -7.9248 1.8240 25 6 3.9848 -8.0906 3.2264 26 6 2.5365 -7.9997 3.7415 27 6 2.0873 -8.4912 2.3529 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5572 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 2.6181 -6.9854 -0.7635 34 1 6.2959 -6.1978 -0.6111 35 1 4.7192 -6.6437 -1.3512 36 1 6.9901 -8.4523 -0.4433 37 1 5.8085 -8.7136 -1.7589 38 1 4.4493 -9.0622 3.3955 39 1 4.6141 -7.2579 3.5405 40 1 2.2175 -6.9823 3.9679 41 1 2.3148 -8.7018 4.5451 42 1 1.2048 -7.9777 1.9712 43 1 2.0142 -9.5758 2.2735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245566237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:15 Heat of formation + Delta-G solvation = -7.535698 kcal Electronic energy + Delta-G solvation = -25616.055919 eV Core-core repulsion = 21985.731762 eV Total energy + Delta-G solvation = -3630.324157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.63039 -38.25384 -36.64249 -35.57126 -35.44435 -33.94011 -32.00913 -31.21340 -30.67984 -26.09792 -25.63262 -24.97644 -24.37240 -22.10388 -21.62528 -20.60700 -19.24016 -18.45708 -17.81222 -16.81535 -16.45598 -16.34654 -15.97154 -15.63017 -15.30390 -15.11454 -14.63458 -14.57936 -14.15010 -13.66375 -13.43746 -12.86620 -12.55753 -12.50103 -12.39538 -11.82454 -11.80479 -11.65850 -11.64746 -11.58828 -11.55909 -11.45256 -11.15206 -11.11185 -10.99909 -10.84991 -10.44540 -10.43172 -10.42057 -9.84183 -9.67134 -9.56568 -9.23893 -8.98495 -8.54099 -6.16011 -4.21744 0.67969 2.76606 2.96571 3.22782 3.30299 3.33328 3.88177 4.02438 4.11394 4.30152 4.35922 4.47340 4.52301 4.67373 4.73592 4.80692 4.84299 4.99052 5.09125 5.19403 5.23653 5.24548 5.33990 5.51711 5.53741 5.57544 5.60509 5.64118 5.66921 5.77209 5.79442 5.86648 5.99846 6.08167 6.23664 6.33354 6.42650 6.85053 6.90026 7.25532 7.31180 7.77049 8.13301 8.81896 9.43405 10.95050 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.003842 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.115466 B = 7286.468723 C = 7702.144526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.587 3.413 12 O -0.964 6.964 13 O -0.958 6.958 14 N -1.103 6.103 15 C 0.172 3.828 16 H 0.118 0.882 17 C -0.189 4.189 18 H 0.125 0.875 19 C -0.143 4.143 20 C 0.053 3.947 21 O -0.362 6.362 22 C 0.046 3.954 23 H 0.079 0.921 24 C -0.081 4.081 25 C -0.109 4.109 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.413 0.587 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.555 -16.838 2.964 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.685 3.315 12 O -0.955 6.955 13 O -0.948 6.948 14 N -0.860 5.860 15 C 0.063 3.937 16 H 0.136 0.864 17 C -0.209 4.209 18 H 0.143 0.857 19 C -0.180 4.180 20 C -0.022 4.022 21 O -0.281 6.281 22 C -0.013 4.013 23 H 0.096 0.904 24 C -0.083 4.083 25 C -0.147 4.147 26 C -0.176 4.176 27 C -0.167 4.167 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.449 -17.020 3.127 20.215 hybrid contribution 1.169 1.128 -0.570 1.721 sum 11.618 -15.893 2.557 19.852 Atomic orbital electron populations 1.69964 1.06119 1.27130 1.49574 1.25065 0.94964 0.99554 0.94869 0.86420 0.79916 0.83181 0.77801 1.19653 1.20780 1.20772 1.21026 0.93081 0.89709 1.52139 0.91984 1.18975 0.92675 0.90558 0.98926 1.30452 1.13667 1.17816 1.10161 1.05822 0.74728 0.76637 0.74349 1.93567 1.71368 1.85327 1.45226 1.93558 1.71094 1.84785 1.45384 1.55990 1.52233 1.51912 1.25838 1.20826 0.88370 0.96784 0.87724 0.86436 1.24783 0.95698 1.01650 0.98795 0.85695 1.22618 1.01776 0.96595 0.97041 1.24160 0.94976 0.89410 0.93690 1.87734 1.38709 1.37285 1.64385 1.23089 0.92212 0.88203 0.97828 0.90401 1.22678 0.97445 0.95712 0.92477 1.22641 0.97181 1.02610 0.92249 1.22842 0.95505 1.02437 0.96798 1.22757 0.96973 1.00746 0.96235 0.92551 0.94854 0.94770 0.86251 0.86048 0.74948 0.89808 0.90030 0.90153 0.91205 0.89243 0.90793 0.89307 0.91248 0.89854 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.68 6.01 37.16 0.22 -10.45 16 11 S 2.59 43.84 5.41 -107.50 -0.58 43.26 16 12 O -0.96 -19.38 18.08 -57.54 -1.04 -20.42 16 13 O -0.96 -18.59 17.80 -57.54 -1.02 -19.62 16 14 N -1.10 -13.66 5.04 -15.04 -0.08 -13.73 16 15 C 0.17 1.91 4.35 -79.26 -0.34 1.57 16 16 H 0.12 1.25 7.84 -51.93 -0.41 0.84 16 17 C -0.19 -1.82 4.48 -100.61 -0.45 -2.27 16 18 H 0.13 1.08 7.06 -51.93 -0.37 0.72 16 19 C -0.14 -1.23 6.64 -25.17 -0.17 -1.39 16 20 C 0.05 0.46 7.87 38.82 0.31 0.77 16 21 O -0.36 -4.21 11.31 -28.71 -0.32 -4.54 16 22 C 0.05 0.50 4.89 -38.05 -0.19 0.32 16 23 H 0.08 0.87 5.05 -51.93 -0.26 0.60 16 24 C -0.08 -0.86 1.08 -168.04 -0.18 -1.04 16 25 C -0.11 -0.99 7.12 -26.36 -0.19 -1.18 16 26 C -0.14 -1.38 8.08 -25.72 -0.21 -1.59 16 27 C -0.13 -1.47 7.90 -26.37 -0.21 -1.67 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.12 1.90 7.92 -51.92 -0.41 1.49 16 32 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 33 H 0.41 4.48 6.07 -34.47 -0.21 4.27 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.70 7.25 -51.93 -0.38 0.33 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -34.09 354.24 -10.57 -44.66 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.62 Total: 3.83 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -1.96 Total: -29.25 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.66 Total: -39.10 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -2.39 Total: -44.58 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 43.84 SS G_CDS: -0.58 Total: 43.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.09 -10.57 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245566237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.129 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds