Wall clock time and date at job start Tue Mar 31 2020 11:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48499 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47226 * 300.00291 * 3 2 1 6 6 H 1.48505 * 109.47124 * 59.99885 * 3 2 1 7 7 C 1.37872 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47242 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47207 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54441 * 68.37254 * 11 10 9 13 13 O 1.42101 * 110.54060 * 291.62631 * 11 10 9 14 14 N 1.65593 * 104.44926 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99919 * 65.00244 * 14 11 10 16 16 H 1.08992 * 113.54001 * 347.68597 * 15 14 11 17 17 C 1.50986 * 114.52533 * 213.54185 * 15 14 11 18 18 H 1.08997 * 115.45455 * 171.97725 * 17 15 14 19 19 C 1.52803 * 125.72770 * 17.34857 * 17 15 14 20 20 C 1.56109 * 100.07533 * 233.22115 * 19 17 15 21 21 O 1.45470 * 105.74207 * 23.24883 * 20 19 17 22 22 C 1.38640 * 107.04618 * 12.00756 * 21 20 19 23 23 H 1.09002 * 108.92734 * 74.40597 * 22 21 20 24 24 C 1.47465 * 138.25311 * 228.73014 * 22 21 20 25 25 C 1.52728 * 125.41724 * 17.31907 * 24 22 21 26 26 C 1.53985 * 86.70342 * 201.51695 * 25 24 22 27 27 C 1.52704 * 125.48249 * 259.83457 * 24 22 21 28 28 H 0.96998 * 119.99713 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47192 * 60.00212 * 9 7 2 30 30 H 1.08997 * 109.47534 * 299.99829 * 9 7 2 31 31 H 1.08999 * 109.46868 * 59.99996 * 10 9 7 32 32 H 1.08997 * 109.46702 * 300.00321 * 10 9 7 33 33 H 0.97001 * 120.00291 * 244.99196 * 14 11 10 34 34 H 1.09000 * 111.29030 * 115.51159 * 19 17 15 35 35 H 1.09005 * 111.33265 * 350.94724 * 19 17 15 36 36 H 1.08996 * 110.19360 * 264.17932 * 20 19 17 37 37 H 1.08998 * 110.25732 * 142.35410 * 20 19 17 38 38 H 1.09010 * 113.67304 * 315.96107 * 25 24 22 39 39 H 1.09001 * 113.67857 * 87.06209 * 25 24 22 40 40 H 1.09003 * 113.56601 * 269.93888 * 26 25 24 41 41 H 1.08994 * 113.57233 * 139.18439 * 26 25 24 42 42 H 1.09001 * 113.67293 * 272.88837 * 27 24 22 43 43 H 1.08997 * 113.67590 * 43.88915 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6640 -5.4200 1.2354 14 7 2.5205 -6.3926 -0.0020 15 6 3.4189 -6.5234 1.1478 16 1 3.3620 -5.6853 1.8423 17 6 4.8234 -6.9549 0.7999 18 1 5.5394 -6.9258 1.6212 19 6 5.4573 -6.8938 -0.5891 20 6 5.9425 -8.3706 -0.7330 21 8 5.1095 -9.1495 0.1700 22 6 4.0663 -8.3287 0.5704 23 1 3.3600 -8.2272 -0.2536 24 6 3.4031 -7.9248 1.8240 25 6 3.9848 -8.0906 3.2264 26 6 2.5365 -7.9997 3.7415 27 6 2.0873 -8.4912 2.3529 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5572 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 2.6181 -6.9854 -0.7635 34 1 6.2959 -6.1978 -0.6111 35 1 4.7192 -6.6437 -1.3512 36 1 6.9901 -8.4523 -0.4433 37 1 5.8085 -8.7136 -1.7589 38 1 4.4493 -9.0622 3.3955 39 1 4.6141 -7.2579 3.5405 40 1 2.2175 -6.9823 3.9679 41 1 2.3148 -8.7018 4.5451 42 1 1.2048 -7.9777 1.9712 43 1 2.0142 -9.5758 2.2735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245566237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:15 Heat of formation + Delta-G solvation = -31.900781 kcal Electronic energy + Delta-G solvation = -25617.112469 eV Core-core repulsion = 21985.731762 eV Total energy + Delta-G solvation = -3631.380706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43884 -39.03901 -38.15832 -37.03575 -36.40448 -35.89112 -33.12654 -32.93693 -31.42890 -27.61235 -26.85345 -25.76481 -25.16992 -23.64086 -22.74111 -21.45535 -20.42073 -19.32046 -19.24936 -18.47282 -17.51709 -17.20581 -17.04975 -16.95018 -16.52000 -16.44828 -16.18372 -15.52460 -15.16177 -14.87612 -14.52046 -14.40933 -13.79574 -13.69659 -13.29808 -13.23450 -13.13972 -13.12803 -12.94749 -12.93113 -12.77237 -12.45426 -12.40320 -12.25079 -12.19174 -12.09956 -11.91619 -11.71630 -11.62986 -11.26022 -11.11032 -10.64733 -10.47122 -10.41057 -9.89632 -8.25338 -6.39064 -0.73959 1.42327 1.42400 1.55674 1.70826 2.04575 2.38692 2.75195 3.02788 3.08744 3.19704 3.33054 3.48659 3.72722 3.78879 3.86379 3.96280 4.05382 4.14747 4.15638 4.23167 4.38141 4.49173 4.52569 4.57300 4.73653 4.79780 4.84387 4.86905 4.89241 4.98539 5.10241 5.13862 5.17576 5.25759 5.27766 5.29163 5.44692 5.52999 5.69536 5.90633 6.06866 6.11689 6.75112 7.31421 8.87164 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.003842 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.115466 B = 7286.468723 C = 7702.144526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.584 4.584 11 S 2.615 3.385 12 O -0.999 6.999 13 O -0.985 6.985 14 N -1.085 6.085 15 C 0.155 3.845 16 H 0.125 0.875 17 C -0.173 4.173 18 H 0.142 0.858 19 C -0.144 4.144 20 C 0.050 3.950 21 O -0.382 6.382 22 C 0.036 3.964 23 H 0.071 0.929 24 C -0.082 4.082 25 C -0.097 4.097 26 C -0.139 4.139 27 C -0.140 4.140 28 H 0.267 0.733 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.423 0.577 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.714 -16.974 3.394 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.096 0.904 9 C -0.019 4.019 10 C -0.717 4.717 11 S 2.712 3.288 12 O -0.989 6.989 13 O -0.975 6.975 14 N -0.846 5.846 15 C 0.047 3.953 16 H 0.143 0.857 17 C -0.193 4.193 18 H 0.159 0.841 19 C -0.181 4.181 20 C -0.025 4.025 21 O -0.301 6.301 22 C -0.024 4.024 23 H 0.088 0.912 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.176 4.176 27 C -0.178 4.178 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.624 -17.164 3.548 22.199 hybrid contribution 0.182 1.052 -0.706 1.280 sum 13.806 -16.112 2.842 21.407 Atomic orbital electron populations 1.70110 1.08094 1.28220 1.51037 1.26098 0.95805 1.03839 0.94439 0.85283 0.79257 0.78108 0.77709 1.17785 1.20563 1.20445 1.21541 0.94027 0.90659 1.51252 0.90447 1.18832 0.93619 0.93101 0.96381 1.30330 1.12713 1.16010 1.12627 1.04699 0.74656 0.76484 0.72929 1.93514 1.72861 1.85866 1.46666 1.93524 1.72303 1.85196 1.46467 1.55461 1.51742 1.50462 1.26933 1.21094 0.89239 0.97584 0.87399 0.85719 1.24785 0.94871 0.99627 1.00021 0.84069 1.22680 1.02263 0.96992 0.96185 1.24331 0.95377 0.89054 0.93757 1.87711 1.39018 1.38416 1.64998 1.23068 0.92423 0.89332 0.97538 0.91211 1.22759 0.97229 0.95045 0.93404 1.22627 0.96670 1.03742 0.90458 1.22834 0.96306 1.02079 0.96394 1.22815 0.96468 1.00970 0.97525 0.92449 0.97730 0.97344 0.83607 0.83834 0.73736 0.88143 0.90310 0.88500 0.90459 0.88373 0.89118 0.90347 0.89979 0.92477 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.02 1.00 4.98 29.85 0.15 1.15 16 10 C -0.58 -20.79 6.01 71.99 0.43 -20.36 16 11 S 2.62 89.15 5.41 -56.49 -0.31 88.84 16 12 O -1.00 -40.95 18.08 -127.65 -2.31 -43.26 16 13 O -0.99 -39.04 17.80 -127.65 -2.27 -41.32 16 14 N -1.09 -25.85 5.04 -201.50 -1.02 -26.87 16 15 C 0.16 3.16 4.35 37.65 0.16 3.33 16 16 H 0.13 2.37 7.84 -2.39 -0.02 2.35 16 17 C -0.17 -2.82 4.48 -17.27 -0.08 -2.89 16 18 H 0.14 1.89 7.06 -2.39 -0.02 1.87 16 19 C -0.14 -2.03 6.64 31.61 0.21 -1.82 16 20 C 0.05 0.72 7.87 73.06 0.58 1.30 16 21 O -0.38 -8.07 11.31 -125.64 -1.42 -9.49 16 22 C 0.04 0.72 4.89 23.26 0.11 0.83 16 23 H 0.07 1.48 5.05 -2.39 -0.01 1.46 16 24 C -0.08 -1.62 1.08 -60.94 -0.07 -1.69 16 25 C -0.10 -1.53 7.12 30.84 0.22 -1.31 16 26 C -0.14 -2.59 8.08 31.25 0.25 -2.34 16 27 C -0.14 -3.11 7.90 30.83 0.24 -2.87 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.15 4.36 7.92 -2.39 -0.02 4.34 16 32 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.42 8.79 6.07 -96.75 -0.59 8.21 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.16 7.25 -2.38 -0.02 1.14 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.09 1.14 7.67 -2.39 -0.02 1.12 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.71 354.24 -1.68 -76.39 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.42 Total: 22.20 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 2.91 Total: -55.05 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -0.73 Total: -82.77 kcal Atomic # 8 Polarization: -88.06 SS G_CDS: -6.00 Total: -94.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 89.15 SS G_CDS: -0.31 Total: 88.84 kcal Total: -74.71 -1.68 -76.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245566237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.485 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds