Wall clock time and date at job start Tue Mar 31 2020 11:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46489 * 109.47402 * 2 1 4 4 C 1.37097 * 120.00294 * 264.64762 * 3 2 1 5 5 H 1.08003 * 120.00332 * 144.22333 * 4 3 2 6 6 C 1.38951 * 119.99982 * 324.22142 * 4 3 2 7 7 N 1.31407 * 120.00087 * 337.29576 * 6 4 3 8 8 Si 1.86804 * 120.00048 * 157.30112 * 6 4 3 9 9 H 1.48494 * 109.47220 * 59.99497 * 8 6 4 10 10 H 1.48493 * 109.47082 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46901 * 300.00078 * 8 6 4 12 12 C 1.34780 * 119.99929 * 84.64517 * 3 2 1 13 13 O 1.21295 * 120.00236 * 179.97438 * 12 3 2 14 14 C 1.50702 * 119.99735 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.46952 * 173.83539 * 14 12 3 16 16 H 1.09005 * 109.47098 * 55.27610 * 15 14 12 17 17 C 1.50703 * 109.47163 * 295.27925 * 15 14 12 18 18 C 1.38239 * 119.99588 * 299.72522 * 17 15 14 19 19 C 1.38230 * 119.99780 * 179.80831 * 18 17 15 20 20 C 1.38235 * 120.00010 * 0.40035 * 19 18 17 21 21 C 1.38241 * 120.00086 * 359.85442 * 20 19 18 22 22 C 1.38231 * 120.00139 * 120.00032 * 17 15 14 23 23 C 1.52996 * 109.47118 * 175.27737 * 15 14 12 24 24 F 1.39898 * 109.47375 * 176.67519 * 23 15 14 25 25 F 1.39907 * 109.47137 * 296.67795 * 23 15 14 26 26 F 1.39898 * 109.46963 * 56.67313 * 23 15 14 27 27 H 1.08994 * 109.47607 * 59.99444 * 1 2 3 28 28 H 1.09002 * 109.47502 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46612 * 299.99492 * 1 2 3 30 30 H 1.09009 * 109.46612 * 240.00508 * 2 1 3 31 31 H 1.09001 * 109.47780 * 120.00924 * 2 1 3 32 32 H 0.97001 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47571 * 53.83465 * 14 12 3 34 34 H 1.09000 * 109.46819 * 293.83010 * 14 12 3 35 35 H 1.08002 * 120.00227 * 0.02562 * 18 17 15 36 36 H 1.07997 * 120.00188 * 180.23293 * 19 18 17 37 37 H 1.08000 * 120.00447 * 179.82794 * 20 19 18 38 38 H 1.07993 * 119.99936 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99742 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3513 1.9905 -1.1821 5 1 2.1549 3.0434 -1.3210 6 6 2.9415 1.2535 -2.2015 7 7 3.5810 0.1401 -1.9220 8 14 2.8260 1.8456 -3.9695 9 1 3.4553 3.1857 -4.0848 10 1 3.5315 0.8886 -4.8591 11 1 1.3987 1.9330 -4.3700 12 6 2.1403 2.0527 1.1621 13 8 2.5451 3.1961 1.1623 14 6 1.7748 1.3827 2.4616 15 6 2.1472 2.2980 3.6297 16 1 1.6703 3.2691 3.4967 17 6 3.6432 2.4746 3.6724 18 6 4.4644 1.3753 3.8406 19 6 5.8368 1.5368 3.8757 20 6 6.3877 2.7985 3.7510 21 6 5.5663 3.8984 3.5881 22 6 4.1940 3.7364 3.5490 23 6 1.6701 1.6708 4.9412 24 9 2.0767 2.4697 6.0152 25 9 0.2742 1.5765 4.9323 26 9 2.2229 0.3927 5.0751 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 3.9933 -0.3742 -2.6336 33 1 2.3172 0.4414 2.5503 34 1 0.7026 1.1874 2.4806 35 1 4.0339 0.3899 3.9410 36 1 6.4785 0.6776 4.0033 37 1 7.4598 2.9251 3.7812 38 1 5.9967 4.8841 3.4911 39 1 3.5522 4.5956 3.4217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263984071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:55 Heat of formation + Delta-G solvation = -162.320857 kcal Electronic energy + Delta-G solvation = -27704.556272 eV Core-core repulsion = 23390.219435 eV Total energy + Delta-G solvation = -4314.336837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99412 -47.47657 -47.44555 -39.43533 -38.27164 -35.24687 -34.08165 -32.05887 -30.58094 -29.50165 -29.41077 -27.05820 -24.65396 -23.15703 -22.34834 -22.20320 -20.87306 -18.99953 -18.36377 -18.02726 -17.41289 -16.74632 -16.51237 -15.53676 -15.33697 -14.79245 -14.68245 -14.38740 -14.19310 -14.07803 -14.01891 -13.87041 -13.65523 -13.59186 -13.07354 -12.94571 -12.84130 -12.75697 -12.60581 -11.94886 -11.84855 -11.68851 -11.56037 -11.16831 -11.07645 -10.98884 -10.72405 -10.59807 -10.38224 -10.32491 -10.09681 -8.94459 -8.58528 -8.53729 -8.30226 -7.49275 -6.35210 -3.96360 1.59204 1.78474 2.91105 3.17672 3.24221 3.27552 3.82135 3.90280 4.01888 4.15699 4.20434 4.30665 4.88286 4.91433 5.04803 5.07319 5.25037 5.30192 5.40929 5.49119 5.74133 5.76630 5.81011 5.91503 5.93973 6.11449 6.20015 6.27018 6.32710 6.36961 6.49976 6.75250 6.82066 6.85110 6.90091 7.20886 7.31494 7.57667 8.23028 8.48265 9.16821 9.39154 9.98618 10.69303 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.005271 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.331197 B = 5311.299097 C = 6396.934183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.437 5.437 4 C -0.309 4.309 5 H 0.091 0.909 6 C 0.038 3.962 7 N -0.866 5.866 8 Si 0.915 3.085 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.465 3.535 13 O -0.573 6.573 14 C -0.134 4.134 15 C -0.070 4.070 16 H 0.126 0.874 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.067 4.067 23 C 0.456 3.544 24 F -0.182 7.182 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -0.415 11.470 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.156 5.156 4 C -0.437 4.437 5 H 0.108 0.892 6 C -0.166 4.166 7 N -0.504 5.504 8 Si 0.742 3.258 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.253 3.747 13 O -0.457 6.457 14 C -0.175 4.175 15 C -0.090 4.090 16 H 0.144 0.856 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.141 4.141 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.085 4.085 23 C 0.402 3.598 24 F -0.163 7.163 25 F -0.166 7.166 26 F -0.163 7.163 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.941 -0.026 11.372 11.411 hybrid contribution -0.139 -0.147 -0.789 0.814 sum -1.081 -0.173 10.583 10.640 Atomic orbital electron populations 1.22216 0.98124 1.00460 1.01546 1.21544 0.91747 0.85612 1.03840 1.43426 1.55610 1.11715 1.04802 1.19354 1.38839 0.96177 0.89311 0.89154 1.25327 0.94237 0.96591 1.00467 1.69952 1.30534 1.16598 1.33324 0.86181 0.78556 0.78776 0.82311 1.19770 1.21002 1.19910 1.19798 0.82702 0.88033 0.84215 1.90522 1.50138 1.18472 1.86523 1.21766 1.02989 0.99156 0.93564 1.21141 0.95802 1.02536 0.89545 0.85574 1.19106 0.92097 0.94310 1.01944 1.21144 0.93901 0.98367 0.99368 1.20995 0.94743 0.97211 1.01180 1.21104 0.99426 0.92939 1.00001 1.21056 0.93580 0.98705 1.01006 1.20898 0.95013 0.96434 0.96134 1.20659 0.74948 0.76663 0.87561 1.93169 1.90331 1.73653 1.59160 1.93168 1.30341 1.96180 1.96868 1.93127 1.85213 1.41419 1.96504 0.92348 0.93014 0.93905 0.87349 0.93402 0.92209 0.88931 0.89090 0.85736 0.86273 0.86477 0.86258 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.17 37.16 0.38 -2.51 16 2 C 0.10 2.04 5.43 -4.05 -0.02 2.02 16 3 N -0.44 -10.67 2.54 -114.82 -0.29 -10.96 16 4 C -0.31 -8.37 8.93 -14.93 -0.13 -8.50 16 5 H 0.09 2.56 7.75 -52.48 -0.41 2.16 16 6 C 0.04 1.00 4.88 -17.47 -0.09 0.91 16 7 N -0.87 -23.02 11.50 55.50 0.64 -22.38 16 8 Si 0.92 20.33 29.61 -169.99 -5.03 15.30 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.47 10.73 7.26 -10.98 -0.08 10.65 16 13 O -0.57 -14.71 14.26 5.54 0.08 -14.63 16 14 C -0.13 -2.39 3.52 -27.88 -0.10 -2.48 16 15 C -0.07 -1.14 1.73 -91.77 -0.16 -1.30 16 16 H 0.13 2.03 7.61 -51.93 -0.40 1.64 16 17 C -0.07 -1.28 3.46 -104.62 -0.36 -1.64 16 18 C -0.11 -1.81 8.40 -39.58 -0.33 -2.14 16 19 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 20 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 22 C -0.07 -1.13 8.77 -39.59 -0.35 -1.48 16 23 C 0.46 6.63 2.66 37.16 0.10 6.73 16 24 F -0.18 -2.66 16.94 2.25 0.04 -2.62 16 25 F -0.18 -2.61 16.85 2.25 0.04 -2.58 16 26 F -0.18 -2.62 14.33 2.25 0.03 -2.58 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.69 6.72 -51.92 -0.35 0.34 16 30 H 0.11 2.54 5.51 -51.92 -0.29 2.26 16 31 H 0.05 0.92 6.50 -51.93 -0.34 0.59 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.09 1.59 5.92 -51.93 -0.31 1.28 16 34 H 0.09 1.45 6.41 -51.93 -0.33 1.11 16 35 H 0.12 1.92 5.91 -52.49 -0.31 1.61 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 2.00 7.95 -52.49 -0.42 1.58 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -29.64 331.76 -6.23 -35.86 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.39 Total: 6.07 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.34 Total: -6.48 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.35 Total: -33.34 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.64 -6.23 -35.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263984071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.456 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds