Wall clock time and date at job start Tue Mar 31 2020 11:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46489 * 109.47402 * 2 1 4 4 C 1.37097 * 120.00294 * 264.64762 * 3 2 1 5 5 H 1.08003 * 120.00332 * 144.22333 * 4 3 2 6 6 C 1.38951 * 119.99982 * 324.22142 * 4 3 2 7 7 N 1.31407 * 120.00087 * 337.29576 * 6 4 3 8 8 Si 1.86804 * 120.00048 * 157.30112 * 6 4 3 9 9 H 1.48494 * 109.47220 * 59.99497 * 8 6 4 10 10 H 1.48493 * 109.47082 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46901 * 300.00078 * 8 6 4 12 12 C 1.34780 * 119.99929 * 84.64517 * 3 2 1 13 13 O 1.21295 * 120.00236 * 179.97438 * 12 3 2 14 14 C 1.50702 * 119.99735 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.46952 * 173.83539 * 14 12 3 16 16 H 1.09005 * 109.47098 * 55.27610 * 15 14 12 17 17 C 1.50703 * 109.47163 * 295.27925 * 15 14 12 18 18 C 1.38239 * 119.99588 * 299.72522 * 17 15 14 19 19 C 1.38230 * 119.99780 * 179.80831 * 18 17 15 20 20 C 1.38235 * 120.00010 * 0.40035 * 19 18 17 21 21 C 1.38241 * 120.00086 * 359.85442 * 20 19 18 22 22 C 1.38231 * 120.00139 * 120.00032 * 17 15 14 23 23 C 1.52996 * 109.47118 * 175.27737 * 15 14 12 24 24 F 1.39898 * 109.47375 * 176.67519 * 23 15 14 25 25 F 1.39907 * 109.47137 * 296.67795 * 23 15 14 26 26 F 1.39898 * 109.46963 * 56.67313 * 23 15 14 27 27 H 1.08994 * 109.47607 * 59.99444 * 1 2 3 28 28 H 1.09002 * 109.47502 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46612 * 299.99492 * 1 2 3 30 30 H 1.09009 * 109.46612 * 240.00508 * 2 1 3 31 31 H 1.09001 * 109.47780 * 120.00924 * 2 1 3 32 32 H 0.97001 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47571 * 53.83465 * 14 12 3 34 34 H 1.09000 * 109.46819 * 293.83010 * 14 12 3 35 35 H 1.08002 * 120.00227 * 0.02562 * 18 17 15 36 36 H 1.07997 * 120.00188 * 180.23293 * 19 18 17 37 37 H 1.08000 * 120.00447 * 179.82794 * 20 19 18 38 38 H 1.07993 * 119.99936 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99742 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3513 1.9905 -1.1821 5 1 2.1549 3.0434 -1.3210 6 6 2.9415 1.2535 -2.2015 7 7 3.5810 0.1401 -1.9220 8 14 2.8260 1.8456 -3.9695 9 1 3.4553 3.1857 -4.0848 10 1 3.5315 0.8886 -4.8591 11 1 1.3987 1.9330 -4.3700 12 6 2.1403 2.0527 1.1621 13 8 2.5451 3.1961 1.1623 14 6 1.7748 1.3827 2.4616 15 6 2.1472 2.2980 3.6297 16 1 1.6703 3.2691 3.4967 17 6 3.6432 2.4746 3.6724 18 6 4.4644 1.3753 3.8406 19 6 5.8368 1.5368 3.8757 20 6 6.3877 2.7985 3.7510 21 6 5.5663 3.8984 3.5881 22 6 4.1940 3.7364 3.5490 23 6 1.6701 1.6708 4.9412 24 9 2.0767 2.4697 6.0152 25 9 0.2742 1.5765 4.9323 26 9 2.2229 0.3927 5.0751 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 3.9933 -0.3742 -2.6336 33 1 2.3172 0.4414 2.5503 34 1 0.7026 1.1874 2.4806 35 1 4.0339 0.3899 3.9410 36 1 6.4785 0.6776 4.0033 37 1 7.4598 2.9251 3.7812 38 1 5.9967 4.8841 3.4911 39 1 3.5522 4.5956 3.4217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263984071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:54 Heat of formation + Delta-G solvation = -176.791254 kcal Electronic energy + Delta-G solvation = -27705.183755 eV Core-core repulsion = 23390.219435 eV Total energy + Delta-G solvation = -4314.964320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.16306 -48.63081 -48.61471 -40.90898 -39.78335 -36.98575 -35.53280 -33.96250 -31.78328 -31.15072 -30.74079 -28.51850 -26.43488 -24.44006 -23.86702 -23.49248 -22.19577 -20.59113 -19.53539 -19.36573 -18.78740 -18.49358 -17.80472 -17.23852 -16.84179 -16.33554 -16.10743 -15.71774 -15.64485 -15.45665 -15.32526 -15.03359 -14.82915 -14.76592 -14.54943 -14.48128 -14.22664 -14.10629 -13.95477 -13.57156 -13.37441 -13.19409 -12.92990 -12.78614 -12.67281 -12.57434 -12.22124 -12.11827 -11.93153 -11.79405 -11.72347 -10.84918 -10.31909 -9.76461 -9.64405 -9.39513 -8.32080 -6.00452 0.37715 0.55814 1.39219 1.42287 1.51360 1.69366 2.09101 2.30475 2.63852 2.78684 2.94158 3.04493 3.09159 3.28598 3.70196 3.75068 3.91607 4.15583 4.16913 4.23881 4.28100 4.39884 4.46130 4.59773 4.65654 4.68743 4.80112 4.88214 5.06219 5.09178 5.17130 5.32824 5.49283 5.55467 5.58018 5.62365 5.66356 6.13297 6.24114 6.56867 7.22541 7.52374 8.11784 8.70752 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.005271 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.331197 B = 5311.299097 C = 6396.934183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.452 5.452 4 C -0.339 4.339 5 H 0.064 0.936 6 C 0.006 3.994 7 N -0.886 5.886 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.265 1.265 12 C 0.456 3.544 13 O -0.607 6.607 14 C -0.121 4.121 15 C -0.068 4.068 16 H 0.122 0.878 17 C -0.092 4.092 18 C -0.127 4.127 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.092 4.092 23 C 0.468 3.532 24 F -0.181 7.181 25 F -0.179 7.179 26 F -0.177 7.177 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.272 0.728 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -1.434 11.934 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.172 5.172 4 C -0.467 4.467 5 H 0.082 0.918 6 C -0.197 4.197 7 N -0.524 5.524 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.190 1.190 12 C 0.246 3.754 13 O -0.493 6.493 14 C -0.161 4.161 15 C -0.088 4.088 16 H 0.140 0.860 17 C -0.092 4.092 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.138 4.138 21 C -0.153 4.153 22 C -0.110 4.110 23 C 0.414 3.586 24 F -0.162 7.162 25 F -0.160 7.160 26 F -0.159 7.159 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.010 -1.070 11.848 11.939 hybrid contribution -0.066 0.193 -0.900 0.923 sum -1.076 -0.877 10.947 11.035 Atomic orbital electron populations 1.22116 0.95278 1.02520 1.01409 1.21631 0.94066 0.83751 1.03370 1.43683 1.56040 1.12883 1.04569 1.19286 1.40411 0.95592 0.91387 0.91828 1.25993 0.93464 0.96677 1.03562 1.70017 1.30664 1.17275 1.34424 0.85294 0.78899 0.77992 0.77982 1.20432 1.19867 1.18976 1.20585 0.81634 0.87695 0.85536 1.90494 1.51357 1.20109 1.87322 1.21640 1.04390 0.99030 0.91046 1.21053 0.95684 1.02170 0.89892 0.86001 1.19279 0.92618 0.94690 1.02606 1.21366 0.94680 0.98495 0.99980 1.21396 0.94710 0.98450 1.00341 1.21501 1.00983 0.92465 0.98896 1.21403 0.93196 1.00221 1.00439 1.21083 0.96013 0.96553 0.97358 1.20249 0.75024 0.76562 0.86745 1.93173 1.90378 1.73734 1.58932 1.93181 1.29898 1.96149 1.96813 1.93135 1.85216 1.41103 1.96439 0.93968 0.89798 0.92536 0.89828 0.91744 0.91844 0.88063 0.86841 0.85009 0.83834 0.83508 0.84226 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 10.17 71.98 0.73 -4.41 16 2 C 0.10 3.95 5.43 86.38 0.47 4.41 16 3 N -0.45 -22.32 2.54 -635.55 -1.62 -23.93 16 4 C -0.34 -18.77 8.93 84.04 0.75 -18.02 16 5 H 0.06 3.78 7.75 -2.91 -0.02 3.75 16 6 C 0.01 0.31 4.88 84.93 0.41 0.72 16 7 N -0.89 -47.17 11.50 21.66 0.25 -46.92 16 8 Si 0.97 41.87 29.61 68.60 2.03 43.90 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 12 C 0.46 21.20 7.26 87.66 0.64 21.84 16 13 O -0.61 -32.01 14.26 -3.08 -0.04 -32.05 16 14 C -0.12 -4.17 3.52 29.85 0.11 -4.06 16 15 C -0.07 -2.17 1.73 -11.54 -0.02 -2.19 16 16 H 0.12 3.95 7.61 -2.38 -0.02 3.93 16 17 C -0.09 -3.13 3.46 -19.87 -0.07 -3.20 16 18 C -0.13 -4.08 8.40 22.27 0.19 -3.89 16 19 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 20 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 21 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 22 C -0.09 -3.16 8.77 22.27 0.20 -2.96 16 23 C 0.47 12.92 2.66 71.98 0.19 13.11 16 24 F -0.18 -5.07 16.94 44.97 0.76 -4.31 16 25 F -0.18 -4.71 16.85 44.97 0.76 -3.96 16 26 F -0.18 -4.78 14.33 44.97 0.64 -4.13 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 1.70 6.72 -2.38 -0.02 1.68 16 30 H 0.08 3.91 5.51 -2.38 -0.01 3.90 16 31 H 0.06 2.39 6.50 -2.39 -0.02 2.38 16 32 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 33 H 0.10 3.31 5.92 -2.39 -0.01 3.30 16 34 H 0.11 3.36 6.41 -2.39 -0.02 3.35 16 35 H 0.13 3.88 5.91 -2.91 -0.02 3.87 16 36 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.12 4.00 7.95 -2.91 -0.02 3.97 16 Total: -1.00 -64.44 331.76 8.13 -56.30 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.09 Total: 24.30 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.26 Total: -9.19 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.37 Total: -70.86 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.04 Total: -32.05 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.16 Total: -12.40 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.44 8.13 -56.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263984071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.490 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds