Wall clock time and date at job start Tue Mar 31 2020 11:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46967 * 2 1 4 4 C 1.37099 * 119.99891 * 269.53470 * 3 2 1 5 5 H 1.08001 * 119.99694 * 140.90033 * 4 3 2 6 6 C 1.38947 * 120.00064 * 320.90276 * 4 3 2 7 7 N 1.31416 * 119.99823 * 341.48862 * 6 4 3 8 8 Si 1.86797 * 120.00208 * 161.49532 * 6 4 3 9 9 H 1.48505 * 109.47048 * 59.99702 * 8 6 4 10 10 H 1.48498 * 109.47313 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47020 * 299.99670 * 8 6 4 12 12 C 1.34778 * 120.00137 * 89.53489 * 3 2 1 13 13 O 1.21288 * 119.99825 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99880 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47318 * 182.73372 * 14 12 3 16 16 H 1.09004 * 109.47074 * 305.76803 * 15 14 12 17 17 C 1.50703 * 109.46737 * 65.76491 * 15 14 12 18 18 C 1.38232 * 120.00031 * 59.73365 * 17 15 14 19 19 C 1.38238 * 120.00162 * 179.78897 * 18 17 15 20 20 C 1.38233 * 119.99560 * 0.43138 * 19 18 17 21 21 C 1.38231 * 120.00434 * 359.81899 * 20 19 18 22 22 C 1.38231 * 119.99890 * 359.97413 * 21 20 19 23 23 C 1.52999 * 109.47518 * 185.76570 * 15 14 12 24 24 F 1.39906 * 109.46973 * 303.45875 * 23 15 14 25 25 F 1.39899 * 109.46775 * 63.45975 * 23 15 14 26 26 F 1.39900 * 109.47379 * 183.45763 * 23 15 14 27 27 H 1.08995 * 109.47284 * 300.00001 * 1 2 3 28 28 H 1.09001 * 109.46862 * 60.00371 * 1 2 3 29 29 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47619 * 240.00184 * 2 1 3 31 31 H 1.09001 * 109.46862 * 119.99629 * 2 1 3 32 32 H 0.96994 * 119.99798 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47302 * 62.73307 * 14 12 3 34 34 H 1.09004 * 109.47165 * 302.73291 * 14 12 3 35 35 H 1.08001 * 120.00004 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.99858 * 180.27164 * 19 18 17 37 37 H 1.08005 * 119.99723 * 179.83515 * 20 19 18 38 38 H 1.08001 * 120.00189 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00130 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2559 2.0243 -1.1873 5 1 2.0000 3.0679 -1.2968 6 6 2.8257 1.3335 -2.2497 7 7 3.4640 0.2054 -2.0331 8 14 2.6846 2.0083 -3.9858 9 1 3.3188 3.3497 -4.0485 10 1 3.3718 1.0917 -4.9306 11 1 1.2514 2.1205 -4.3583 12 6 2.2340 2.0198 1.1672 13 8 2.6387 3.1632 1.1671 14 6 1.9734 1.3128 2.4722 15 6 2.2304 2.2749 3.6337 16 1 3.2340 2.6911 3.5455 17 6 1.2185 3.3909 3.5947 18 6 -0.1307 3.1041 3.6850 19 6 -1.0587 4.1282 3.6536 20 6 -0.6378 5.4384 3.5230 21 6 0.7111 5.7249 3.4276 22 6 1.6393 4.7012 3.4633 23 6 2.1061 1.5198 4.9586 24 9 0.8448 0.9194 5.0366 25 9 3.0967 0.5344 5.0284 26 9 2.2631 2.4150 6.0222 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8621 -0.2766 -2.7746 33 1 2.6379 0.4531 2.5587 34 1 0.9373 0.9756 2.5022 35 1 -0.4597 2.0801 3.7830 36 1 -2.1126 3.9044 3.7285 37 1 -1.3630 6.2383 3.4959 38 1 1.0398 6.7485 3.3252 39 1 2.6931 4.9249 3.3883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263984072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:58 Heat of formation + Delta-G solvation = -163.621463 kcal Electronic energy + Delta-G solvation = -27677.791306 eV Core-core repulsion = 23363.398070 eV Total energy + Delta-G solvation = -4314.393235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.99601 -47.47691 -47.44898 -39.48668 -38.29710 -35.25437 -34.10294 -32.03439 -30.66475 -29.49839 -29.45381 -27.07709 -24.66572 -23.18769 -22.36010 -22.23317 -20.90402 -19.02256 -18.36916 -18.04342 -17.42535 -16.79278 -16.50090 -15.55199 -15.29639 -14.92976 -14.72746 -14.39118 -14.21162 -14.06237 -14.01439 -13.87183 -13.65870 -13.59450 -13.09366 -13.03658 -12.86916 -12.75553 -12.53224 -12.11773 -11.88425 -11.64563 -11.47871 -11.23519 -11.05812 -10.96973 -10.76292 -10.66576 -10.38267 -10.34649 -10.09928 -8.95773 -8.64583 -8.61249 -8.34808 -7.44788 -6.32796 -4.01136 1.50984 1.69396 2.90329 3.18172 3.24059 3.27422 3.83312 3.86727 3.98767 4.13961 4.20196 4.27473 4.86344 4.92506 5.00064 5.05546 5.19484 5.24044 5.33001 5.48769 5.68144 5.75863 5.80678 5.86292 5.99295 6.04267 6.19590 6.23568 6.28890 6.33893 6.50879 6.66368 6.73667 6.83651 6.88036 7.22861 7.24538 7.57736 8.25890 8.48895 9.16809 9.38296 9.98385 10.70883 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.004997 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.130075 B = 5601.704024 C = 6434.947569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.438 5.438 4 C -0.305 4.305 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.872 5.872 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.468 3.532 13 O -0.572 6.572 14 C -0.135 4.135 15 C -0.072 4.072 16 H 0.127 0.873 17 C -0.072 4.072 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.066 4.066 23 C 0.456 3.544 24 F -0.182 7.182 25 F -0.183 7.183 26 F -0.182 7.182 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 1.567 11.503 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.157 5.157 4 C -0.433 4.433 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.255 3.745 13 O -0.455 6.455 14 C -0.175 4.175 15 C -0.092 4.092 16 H 0.145 0.855 17 C -0.073 4.073 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.084 4.084 23 C 0.402 3.598 24 F -0.164 7.164 25 F -0.164 7.164 26 F -0.163 7.163 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.960 1.958 11.393 13.006 hybrid contribution -0.057 -0.135 -0.747 0.761 sum -6.017 1.823 10.646 12.364 Atomic orbital electron populations 1.22171 0.98141 1.00270 1.01514 1.21588 0.91905 0.85680 1.03821 1.43393 1.56187 1.11863 1.04273 1.19330 1.39449 0.96931 0.87616 0.89401 1.25385 0.94289 0.96533 1.00424 1.69867 1.31924 1.16884 1.32360 0.86137 0.78569 0.78938 0.81894 1.19763 1.20973 1.19915 1.19862 0.82094 0.87999 0.84508 1.90525 1.49667 1.18312 1.86961 1.21759 1.03960 0.98224 0.93569 1.21163 1.03443 0.95110 0.89443 0.85465 1.19142 0.92889 0.93431 1.01801 1.21146 0.92475 0.99726 0.99688 1.20994 0.99114 0.92844 1.01410 1.21104 0.95843 0.96499 1.00150 1.21074 0.93198 0.99058 1.01007 1.20940 0.99981 0.91535 0.95898 1.20646 0.73454 0.77919 0.87795 1.93124 1.41715 1.84709 1.96813 1.93177 1.62243 1.64126 1.96847 1.93170 1.95316 1.67896 1.59956 0.94051 0.92347 0.93140 0.87182 0.93401 0.92187 0.88751 0.89148 0.85744 0.86304 0.86471 0.86204 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.20 37.16 0.38 -2.52 16 2 C 0.09 1.99 5.47 -4.04 -0.02 1.97 16 3 N -0.44 -10.71 2.51 -114.81 -0.29 -11.00 16 4 C -0.31 -8.26 8.89 -14.93 -0.13 -8.40 16 5 H 0.09 2.50 7.78 -52.49 -0.41 2.09 16 6 C 0.04 0.98 5.01 -17.47 -0.09 0.89 16 7 N -0.87 -23.14 11.40 55.50 0.63 -22.51 16 8 Si 0.92 20.41 29.59 -169.99 -5.03 15.38 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 12 C 0.47 10.79 7.35 -10.99 -0.08 10.71 16 13 O -0.57 -14.64 14.23 5.55 0.08 -14.56 16 14 C -0.13 -2.39 3.31 -27.89 -0.09 -2.48 16 15 C -0.07 -1.16 1.73 -91.77 -0.16 -1.32 16 16 H 0.13 2.09 7.62 -51.93 -0.40 1.70 16 17 C -0.07 -1.19 3.47 -104.62 -0.36 -1.55 16 18 C -0.11 -1.71 8.38 -39.58 -0.33 -2.04 16 19 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 20 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 21 C -0.13 -1.81 10.05 -39.59 -0.40 -2.20 16 22 C -0.07 -1.07 8.73 -39.58 -0.35 -1.41 16 23 C 0.46 6.63 2.66 37.16 0.10 6.73 16 24 F -0.18 -2.57 14.39 2.25 0.03 -2.54 16 25 F -0.18 -2.67 16.84 2.25 0.04 -2.63 16 26 F -0.18 -2.65 16.94 2.25 0.04 -2.61 16 27 H 0.04 0.69 7.11 -51.93 -0.37 0.32 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.11 2.59 5.52 -51.93 -0.29 2.30 16 31 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 34 H 0.09 1.48 5.77 -51.93 -0.30 1.18 16 35 H 0.12 1.75 5.92 -52.49 -0.31 1.44 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.12 1.97 7.95 -52.49 -0.42 1.56 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -29.47 332.69 -6.26 -35.73 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.45 Total: 5.45 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.33 Total: -5.73 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.34 Total: -33.51 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.47 -6.26 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263984072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.893 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds