Wall clock time and date at job start Tue Mar 31 2020 11:20:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46505 * 109.46967 * 2 1
4 4 C 1.37099 * 119.99891 * 269.53470 * 3 2 1
5 5 H 1.08001 * 119.99694 * 140.90033 * 4 3 2
6 6 C 1.38947 * 120.00064 * 320.90276 * 4 3 2
7 7 N 1.31416 * 119.99823 * 341.48862 * 6 4 3
8 8 Si 1.86797 * 120.00208 * 161.49532 * 6 4 3
9 9 H 1.48505 * 109.47048 * 59.99702 * 8 6 4
10 10 H 1.48498 * 109.47313 * 179.97438 * 8 6 4
11 11 H 1.48500 * 109.47020 * 299.99670 * 8 6 4
12 12 C 1.34778 * 120.00137 * 89.53489 * 3 2 1
13 13 O 1.21288 * 119.99825 * 179.97438 * 12 3 2
14 14 C 1.50696 * 119.99880 * 0.02562 * 12 3 2
15 15 C 1.52999 * 109.47318 * 182.73372 * 14 12 3
16 16 H 1.09004 * 109.47074 * 305.76803 * 15 14 12
17 17 C 1.50703 * 109.46737 * 65.76491 * 15 14 12
18 18 C 1.38232 * 120.00031 * 59.73365 * 17 15 14
19 19 C 1.38238 * 120.00162 * 179.78897 * 18 17 15
20 20 C 1.38233 * 119.99560 * 0.43138 * 19 18 17
21 21 C 1.38231 * 120.00434 * 359.81899 * 20 19 18
22 22 C 1.38231 * 119.99890 * 359.97413 * 21 20 19
23 23 C 1.52999 * 109.47518 * 185.76570 * 15 14 12
24 24 F 1.39906 * 109.46973 * 303.45875 * 23 15 14
25 25 F 1.39899 * 109.46775 * 63.45975 * 23 15 14
26 26 F 1.39900 * 109.47379 * 183.45763 * 23 15 14
27 27 H 1.08995 * 109.47284 * 300.00001 * 1 2 3
28 28 H 1.09001 * 109.46862 * 60.00371 * 1 2 3
29 29 H 1.08998 * 109.46855 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47619 * 240.00184 * 2 1 3
31 31 H 1.09001 * 109.46862 * 119.99629 * 2 1 3
32 32 H 0.96994 * 119.99798 * 180.02562 * 7 6 4
33 33 H 1.08998 * 109.47302 * 62.73307 * 14 12 3
34 34 H 1.09004 * 109.47165 * 302.73291 * 14 12 3
35 35 H 1.08001 * 120.00004 * 359.97438 * 18 17 15
36 36 H 1.08004 * 119.99858 * 180.27164 * 19 18 17
37 37 H 1.08005 * 119.99723 * 179.83515 * 20 19 18
38 38 H 1.08001 * 120.00189 * 179.97438 * 21 20 19
39 39 H 1.07996 * 120.00130 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2559 2.0243 -1.1873
5 1 2.0000 3.0679 -1.2968
6 6 2.8257 1.3335 -2.2497
7 7 3.4640 0.2054 -2.0331
8 14 2.6846 2.0083 -3.9858
9 1 3.3188 3.3497 -4.0485
10 1 3.3718 1.0917 -4.9306
11 1 1.2514 2.1205 -4.3583
12 6 2.2340 2.0198 1.1672
13 8 2.6387 3.1632 1.1671
14 6 1.9734 1.3128 2.4722
15 6 2.2304 2.2749 3.6337
16 1 3.2340 2.6911 3.5455
17 6 1.2185 3.3909 3.5947
18 6 -0.1307 3.1041 3.6850
19 6 -1.0587 4.1282 3.6536
20 6 -0.6378 5.4384 3.5230
21 6 0.7111 5.7249 3.4276
22 6 1.6393 4.7012 3.4633
23 6 2.1061 1.5198 4.9586
24 9 0.8448 0.9194 5.0366
25 9 3.0967 0.5344 5.0284
26 9 2.2631 2.4150 6.0222
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 3.8621 -0.2766 -2.7746
33 1 2.6379 0.4531 2.5587
34 1 0.9373 0.9756 2.5022
35 1 -0.4597 2.0801 3.7830
36 1 -2.1126 3.9044 3.7285
37 1 -1.3630 6.2383 3.4959
38 1 1.0398 6.7485 3.3252
39 1 2.6931 4.9249 3.3883
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000263984072.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:57
Heat of formation + Delta-G solvation = -177.923439 kcal
Electronic energy + Delta-G solvation = -27678.411486 eV
Core-core repulsion = 23363.398070 eV
Total energy + Delta-G solvation = -4315.013416 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.119 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-51.16876 -48.63828 -48.62012 -40.91210 -39.77909 -36.98533 -35.53234 -33.94324
-31.77643 -31.12880 -30.75515 -28.53169 -26.44699 -24.42640 -23.83664 -23.49344
-22.18285 -20.61527 -19.53944 -19.37944 -18.77258 -18.51093 -17.78929 -17.20400
-16.77621 -16.50374 -16.08534 -15.69964 -15.58693 -15.46158 -15.32926 -15.03887
-14.83145 -14.77236 -14.54188 -14.48319 -14.23924 -14.08398 -13.91683 -13.57533
-13.45949 -13.16334 -12.84452 -12.77483 -12.69183 -12.63237 -12.21575 -12.09173
-11.92370 -11.79642 -11.74882 -10.87544 -10.32627 -9.76148 -9.64130 -9.35330
-8.29800 -6.05599 0.38026 0.56351 1.39652 1.41635 1.50888 1.69046
2.09408 2.29870 2.63308 2.78395 2.94182 3.04918 3.09379 3.28175
3.69591 3.74269 3.93452 4.16065 4.18472 4.26223 4.29010 4.36248
4.53672 4.57211 4.65849 4.70180 4.78860 4.88161 5.05969 5.08927
5.18127 5.34664 5.47571 5.56196 5.60749 5.63378 5.68170 6.13798
6.26112 6.57846 7.22183 7.51447 8.11193 8.71917
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.014913 B = 0.004997 C = 0.004350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1877.130075 B = 5601.704024 C = 6434.947569
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.092 3.908
3 N -0.454 5.454
4 C -0.334 4.334
5 H 0.061 0.939
6 C 0.004 3.996
7 N -0.891 5.891
8 Si 0.976 3.024
9 H -0.279 1.279
10 H -0.273 1.273
11 H -0.265 1.265
12 C 0.459 3.541
13 O -0.605 6.605
14 C -0.122 4.122
15 C -0.069 4.069
16 H 0.115 0.885
17 C -0.091 4.091
18 C -0.126 4.126
19 C -0.128 4.128
20 C -0.119 4.119
21 C -0.134 4.134
22 C -0.093 4.093
23 C 0.468 3.532
24 F -0.175 7.175
25 F -0.182 7.182
26 F -0.181 7.181
27 H 0.052 0.948
28 H 0.039 0.961
29 H 0.083 0.917
30 H 0.085 0.915
31 H 0.068 0.932
32 H 0.272 0.728
33 H 0.106 0.894
34 H 0.109 0.891
35 H 0.135 0.865
36 H 0.148 0.852
37 H 0.148 0.852
38 H 0.138 0.862
39 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.966 1.051 11.973 14.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.031 4.031
3 N -0.173 5.173
4 C -0.462 4.462
5 H 0.079 0.921
6 C -0.198 4.198
7 N -0.529 5.529
8 Si 0.800 3.200
9 H -0.204 1.204
10 H -0.198 1.198
11 H -0.190 1.190
12 C 0.248 3.752
13 O -0.491 6.491
14 C -0.161 4.161
15 C -0.089 4.089
16 H 0.134 0.866
17 C -0.091 4.091
18 C -0.144 4.144
19 C -0.146 4.146
20 C -0.137 4.137
21 C -0.152 4.152
22 C -0.111 4.111
23 C 0.414 3.586
24 F -0.157 7.157
25 F -0.163 7.163
26 F -0.162 7.162
27 H 0.071 0.929
28 H 0.058 0.942
29 H 0.101 0.899
30 H 0.103 0.897
31 H 0.086 0.914
32 H 0.082 0.918
33 H 0.124 0.876
34 H 0.127 0.873
35 H 0.153 0.847
36 H 0.166 0.834
37 H 0.166 0.834
38 H 0.156 0.844
39 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -7.668 1.414 11.876 14.207
hybrid contribution 0.483 0.069 -0.859 0.988
sum -7.185 1.483 11.016 13.236
Atomic orbital electron populations
1.22065 0.95499 1.02299 1.01156 1.21680 0.94079 0.83838 1.03541
1.43654 1.56677 1.12991 1.04020 1.19252 1.40924 0.96383 0.89635
0.92101 1.26050 0.93569 0.96761 1.03405 1.69941 1.32035 1.17564
1.33400 0.85259 0.78895 0.78010 0.77789 1.20435 1.19803 1.18994
1.20649 0.80958 0.87741 0.85871 1.90497 1.50838 1.19973 1.87767
1.21630 1.05291 0.98167 0.91060 1.21047 1.03071 0.95070 0.89727
0.86640 1.19250 0.93580 0.93358 1.02880 1.21366 0.92172 1.00806
1.00054 1.21408 1.00406 0.92650 1.00101 1.21508 0.95901 0.97472
0.98799 1.21387 0.93707 0.99594 1.00544 1.21065 1.00055 0.92475
0.97487 1.20258 0.73665 0.77667 0.87020 1.93135 1.41261 1.84527
1.96747 1.93183 1.62295 1.64013 1.96805 1.93173 1.95338 1.67988
1.59719 0.92856 0.94207 0.89853 0.89654 0.91379 0.91832 0.87609
0.87250 0.84733 0.83422 0.83382 0.84409 0.86894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.14 10.20 71.98 0.73 -4.40 16
2 C 0.09 3.82 5.47 86.38 0.47 4.29 16
3 N -0.45 -22.44 2.51 -635.53 -1.60 -24.04 16
4 C -0.33 -18.52 8.89 84.04 0.75 -17.77 16
5 H 0.06 3.62 7.78 -2.91 -0.02 3.60 16
6 C 0.00 0.23 5.01 84.92 0.43 0.66 16
7 N -0.89 -47.54 11.40 21.66 0.25 -47.29 16
8 Si 0.98 42.10 29.59 68.60 2.03 44.13 16
9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16
12 C 0.46 21.39 7.35 87.66 0.64 22.04 16
13 O -0.61 -32.03 14.23 -3.06 -0.04 -32.08 16
14 C -0.12 -4.20 3.31 29.85 0.10 -4.10 16
15 C -0.07 -2.21 1.73 -11.54 -0.02 -2.23 16
16 H 0.12 3.92 7.62 -2.39 -0.02 3.90 16
17 C -0.09 -2.94 3.47 -19.86 -0.07 -3.00 16
18 C -0.13 -3.63 8.38 22.27 0.19 -3.45 16
19 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16
20 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16
21 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16
22 C -0.09 -3.06 8.73 22.27 0.19 -2.87 16
23 C 0.47 13.01 2.66 71.98 0.19 13.20 16
24 F -0.18 -4.56 14.39 44.97 0.65 -3.91 16
25 F -0.18 -5.05 16.84 44.97 0.76 -4.29 16
26 F -0.18 -5.09 16.94 44.97 0.76 -4.33 16
27 H 0.05 1.65 7.11 -2.39 -0.02 1.64 16
28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
30 H 0.09 4.01 5.52 -2.39 -0.01 3.99 16
31 H 0.07 2.48 6.54 -2.39 -0.02 2.47 16
32 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16
33 H 0.11 3.40 7.15 -2.39 -0.02 3.38 16
34 H 0.11 3.34 5.77 -2.39 -0.01 3.33 16
35 H 0.13 3.48 5.92 -2.91 -0.02 3.46 16
36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16
37 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16
38 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16
39 H 0.11 3.81 7.95 -2.91 -0.02 3.79 16
Total: -1.00 -64.46 332.69 8.17 -56.30
By element:
Atomic # 1 Polarization: 21.32 SS G_CDS: 1.08 Total: 22.40 kcal
Atomic # 6 Polarization: -11.16 SS G_CDS: 4.28 Total: -6.89 kcal
Atomic # 7 Polarization: -69.98 SS G_CDS: -1.35 Total: -71.33 kcal
Atomic # 8 Polarization: -32.03 SS G_CDS: -0.04 Total: -32.08 kcal
Atomic # 9 Polarization: -14.70 SS G_CDS: 2.17 Total: -12.53 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal
Total: -64.46 8.17 -56.30 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000263984072.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.628 kcal
(2) G-P(sol) polarization free energy of solvation -64.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds