Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46967 * 2 1 4 4 C 1.37099 * 119.99891 * 269.53470 * 3 2 1 5 5 H 1.08001 * 119.99694 * 140.90033 * 4 3 2 6 6 C 1.38947 * 120.00064 * 320.90276 * 4 3 2 7 7 N 1.31416 * 119.99823 * 341.48862 * 6 4 3 8 8 Si 1.86797 * 120.00208 * 161.49532 * 6 4 3 9 9 H 1.48505 * 109.47048 * 59.99702 * 8 6 4 10 10 H 1.48498 * 109.47313 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47020 * 299.99670 * 8 6 4 12 12 C 1.34778 * 120.00137 * 89.53489 * 3 2 1 13 13 O 1.21288 * 119.99825 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99880 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47318 * 182.73372 * 14 12 3 16 16 H 1.09004 * 109.47074 * 305.76803 * 15 14 12 17 17 C 1.50703 * 109.46737 * 65.76491 * 15 14 12 18 18 C 1.38232 * 120.00031 * 59.73365 * 17 15 14 19 19 C 1.38238 * 120.00162 * 179.78897 * 18 17 15 20 20 C 1.38233 * 119.99560 * 0.43138 * 19 18 17 21 21 C 1.38231 * 120.00434 * 359.81899 * 20 19 18 22 22 C 1.38231 * 119.99890 * 359.97413 * 21 20 19 23 23 C 1.52999 * 109.47518 * 185.76570 * 15 14 12 24 24 F 1.39906 * 109.46973 * 303.45875 * 23 15 14 25 25 F 1.39899 * 109.46775 * 63.45975 * 23 15 14 26 26 F 1.39900 * 109.47379 * 183.45763 * 23 15 14 27 27 H 1.08995 * 109.47284 * 300.00001 * 1 2 3 28 28 H 1.09001 * 109.46862 * 60.00371 * 1 2 3 29 29 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47619 * 240.00184 * 2 1 3 31 31 H 1.09001 * 109.46862 * 119.99629 * 2 1 3 32 32 H 0.96994 * 119.99798 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47302 * 62.73307 * 14 12 3 34 34 H 1.09004 * 109.47165 * 302.73291 * 14 12 3 35 35 H 1.08001 * 120.00004 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.99858 * 180.27164 * 19 18 17 37 37 H 1.08005 * 119.99723 * 179.83515 * 20 19 18 38 38 H 1.08001 * 120.00189 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00130 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2559 2.0243 -1.1873 5 1 2.0000 3.0679 -1.2968 6 6 2.8257 1.3335 -2.2497 7 7 3.4640 0.2054 -2.0331 8 14 2.6846 2.0083 -3.9858 9 1 3.3188 3.3497 -4.0485 10 1 3.3718 1.0917 -4.9306 11 1 1.2514 2.1205 -4.3583 12 6 2.2340 2.0198 1.1672 13 8 2.6387 3.1632 1.1671 14 6 1.9734 1.3128 2.4722 15 6 2.2304 2.2749 3.6337 16 1 3.2340 2.6911 3.5455 17 6 1.2185 3.3909 3.5947 18 6 -0.1307 3.1041 3.6850 19 6 -1.0587 4.1282 3.6536 20 6 -0.6378 5.4384 3.5230 21 6 0.7111 5.7249 3.4276 22 6 1.6393 4.7012 3.4633 23 6 2.1061 1.5198 4.9586 24 9 0.8448 0.9194 5.0366 25 9 3.0967 0.5344 5.0284 26 9 2.2631 2.4150 6.0222 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8621 -0.2766 -2.7746 33 1 2.6379 0.4531 2.5587 34 1 0.9373 0.9756 2.5022 35 1 -0.4597 2.0801 3.7830 36 1 -2.1126 3.9044 3.7285 37 1 -1.3630 6.2383 3.4959 38 1 1.0398 6.7485 3.3252 39 1 2.6931 4.9249 3.3883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263984072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = -177.923439 kcal Electronic energy + Delta-G solvation = -27678.411486 eV Core-core repulsion = 23363.398070 eV Total energy + Delta-G solvation = -4315.013416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.16876 -48.63828 -48.62012 -40.91210 -39.77909 -36.98533 -35.53234 -33.94324 -31.77643 -31.12880 -30.75515 -28.53169 -26.44699 -24.42640 -23.83664 -23.49344 -22.18285 -20.61527 -19.53944 -19.37944 -18.77258 -18.51093 -17.78929 -17.20400 -16.77621 -16.50374 -16.08534 -15.69964 -15.58693 -15.46158 -15.32926 -15.03887 -14.83145 -14.77236 -14.54188 -14.48319 -14.23924 -14.08398 -13.91683 -13.57533 -13.45949 -13.16334 -12.84452 -12.77483 -12.69183 -12.63237 -12.21575 -12.09173 -11.92370 -11.79642 -11.74882 -10.87544 -10.32627 -9.76148 -9.64130 -9.35330 -8.29800 -6.05599 0.38026 0.56351 1.39652 1.41635 1.50888 1.69046 2.09408 2.29870 2.63308 2.78395 2.94182 3.04918 3.09379 3.28175 3.69591 3.74269 3.93452 4.16065 4.18472 4.26223 4.29010 4.36248 4.53672 4.57211 4.65849 4.70180 4.78860 4.88161 5.05969 5.08927 5.18127 5.34664 5.47571 5.56196 5.60749 5.63378 5.68170 6.13798 6.26112 6.57846 7.22183 7.51447 8.11193 8.71917 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.004997 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.130075 B = 5601.704024 C = 6434.947569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.454 5.454 4 C -0.334 4.334 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.976 3.024 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.265 1.265 12 C 0.459 3.541 13 O -0.605 6.605 14 C -0.122 4.122 15 C -0.069 4.069 16 H 0.115 0.885 17 C -0.091 4.091 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.093 4.093 23 C 0.468 3.532 24 F -0.175 7.175 25 F -0.182 7.182 26 F -0.181 7.181 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.272 0.728 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 1.051 11.973 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.173 5.173 4 C -0.462 4.462 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.800 3.200 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.190 1.190 12 C 0.248 3.752 13 O -0.491 6.491 14 C -0.161 4.161 15 C -0.089 4.089 16 H 0.134 0.866 17 C -0.091 4.091 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.111 4.111 23 C 0.414 3.586 24 F -0.157 7.157 25 F -0.163 7.163 26 F -0.162 7.162 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.668 1.414 11.876 14.207 hybrid contribution 0.483 0.069 -0.859 0.988 sum -7.185 1.483 11.016 13.236 Atomic orbital electron populations 1.22065 0.95499 1.02299 1.01156 1.21680 0.94079 0.83838 1.03541 1.43654 1.56677 1.12991 1.04020 1.19252 1.40924 0.96383 0.89635 0.92101 1.26050 0.93569 0.96761 1.03405 1.69941 1.32035 1.17564 1.33400 0.85259 0.78895 0.78010 0.77789 1.20435 1.19803 1.18994 1.20649 0.80958 0.87741 0.85871 1.90497 1.50838 1.19973 1.87767 1.21630 1.05291 0.98167 0.91060 1.21047 1.03071 0.95070 0.89727 0.86640 1.19250 0.93580 0.93358 1.02880 1.21366 0.92172 1.00806 1.00054 1.21408 1.00406 0.92650 1.00101 1.21508 0.95901 0.97472 0.98799 1.21387 0.93707 0.99594 1.00544 1.21065 1.00055 0.92475 0.97487 1.20258 0.73665 0.77667 0.87020 1.93135 1.41261 1.84527 1.96747 1.93183 1.62295 1.64013 1.96805 1.93173 1.95338 1.67988 1.59719 0.92856 0.94207 0.89853 0.89654 0.91379 0.91832 0.87609 0.87250 0.84733 0.83422 0.83382 0.84409 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 10.20 71.98 0.73 -4.40 16 2 C 0.09 3.82 5.47 86.38 0.47 4.29 16 3 N -0.45 -22.44 2.51 -635.53 -1.60 -24.04 16 4 C -0.33 -18.52 8.89 84.04 0.75 -17.77 16 5 H 0.06 3.62 7.78 -2.91 -0.02 3.60 16 6 C 0.00 0.23 5.01 84.92 0.43 0.66 16 7 N -0.89 -47.54 11.40 21.66 0.25 -47.29 16 8 Si 0.98 42.10 29.59 68.60 2.03 44.13 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 C 0.46 21.39 7.35 87.66 0.64 22.04 16 13 O -0.61 -32.03 14.23 -3.06 -0.04 -32.08 16 14 C -0.12 -4.20 3.31 29.85 0.10 -4.10 16 15 C -0.07 -2.21 1.73 -11.54 -0.02 -2.23 16 16 H 0.12 3.92 7.62 -2.39 -0.02 3.90 16 17 C -0.09 -2.94 3.47 -19.86 -0.07 -3.00 16 18 C -0.13 -3.63 8.38 22.27 0.19 -3.45 16 19 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 20 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 21 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 22 C -0.09 -3.06 8.73 22.27 0.19 -2.87 16 23 C 0.47 13.01 2.66 71.98 0.19 13.20 16 24 F -0.18 -4.56 14.39 44.97 0.65 -3.91 16 25 F -0.18 -5.05 16.84 44.97 0.76 -4.29 16 26 F -0.18 -5.09 16.94 44.97 0.76 -4.33 16 27 H 0.05 1.65 7.11 -2.39 -0.02 1.64 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 4.01 5.52 -2.39 -0.01 3.99 16 31 H 0.07 2.48 6.54 -2.39 -0.02 2.47 16 32 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.11 3.40 7.15 -2.39 -0.02 3.38 16 34 H 0.11 3.34 5.77 -2.39 -0.01 3.33 16 35 H 0.13 3.48 5.92 -2.91 -0.02 3.46 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.11 3.81 7.95 -2.91 -0.02 3.79 16 Total: -1.00 -64.46 332.69 8.17 -56.30 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 1.08 Total: 22.40 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.28 Total: -6.89 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.35 Total: -71.33 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.04 Total: -32.08 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 2.17 Total: -12.53 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.46 8.17 -56.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263984072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.628 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds