Wall clock time and date at job start Tue Mar 31 2020 11:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47419 * 2 1 4 4 C 1.50703 * 109.46991 * 239.99846 * 2 1 3 5 5 H 1.07998 * 120.00112 * 275.00288 * 4 2 1 6 6 C 1.37871 * 120.00223 * 95.00319 * 4 2 1 7 7 N 1.31516 * 120.00618 * 184.91393 * 6 4 2 8 8 Si 1.86807 * 119.99992 * 4.91765 * 6 4 2 9 9 H 1.48501 * 109.46940 * 84.83267 * 8 6 4 10 10 H 1.48502 * 109.47118 * 204.83518 * 8 6 4 11 11 H 1.48502 * 109.46842 * 324.83279 * 8 6 4 12 12 N 1.46497 * 109.47134 * 120.00048 * 2 1 3 13 13 C 1.46501 * 120.00317 * 59.99651 * 12 2 1 14 14 C 1.34781 * 119.99982 * 240.00016 * 12 2 1 15 15 O 1.21283 * 119.99669 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00391 * 180.02562 * 14 12 2 17 17 C 1.50700 * 109.47566 * 179.97438 * 16 14 12 18 18 C 1.38259 * 119.99697 * 269.72365 * 17 16 14 19 19 C 1.38213 * 119.99380 * 180.36268 * 18 17 16 20 20 C 1.38249 * 120.00555 * 359.86566 * 19 18 17 21 21 C 1.38219 * 119.99592 * 0.09113 * 20 19 18 22 22 C 1.50702 * 119.99579 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47114 * 270.01699 * 22 21 20 24 24 F 1.39901 * 109.47233 * 30.02104 * 22 21 20 25 25 F 1.39904 * 109.46904 * 150.01984 * 22 21 20 26 26 C 1.38209 * 119.99866 * 89.99519 * 17 16 14 27 27 H 1.08992 * 109.47359 * 174.98012 * 1 2 3 28 28 H 1.09000 * 109.47197 * 294.98169 * 1 2 3 29 29 H 1.08997 * 109.47273 * 54.97846 * 1 2 3 30 30 H 0.96993 * 120.00509 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47115 * 270.00450 * 13 12 2 32 32 H 1.09002 * 109.46862 * 30.00531 * 13 12 2 33 33 H 1.09001 * 109.47257 * 150.00091 * 13 12 2 34 34 H 1.09004 * 109.46987 * 59.99425 * 16 14 12 35 35 H 1.09000 * 109.46781 * 299.99830 * 16 14 12 36 36 H 1.07993 * 120.00080 * 0.27491 * 18 17 16 37 37 H 1.08007 * 119.99318 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.00523 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.00043 * 359.70542 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3137 1.8790 -2.3175 9 1 3.5993 2.3946 -1.7822 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1254 1.8911 16 6 3.2960 -0.7461 3.3135 17 6 4.1337 0.2010 4.1336 18 6 5.4962 0.2856 3.9144 19 6 6.2655 1.1487 4.6717 20 6 5.6723 1.9294 5.6463 21 6 4.3101 1.8455 5.8647 22 6 3.6635 2.6961 6.9274 23 9 3.6649 2.0042 8.1433 24 9 4.3797 3.8896 7.0691 25 9 2.3458 2.9843 6.5563 26 6 3.5407 0.9808 5.1085 27 1 -0.3633 -1.0236 -0.0899 28 1 -0.3633 0.4340 0.9315 29 1 -0.3634 0.5897 -0.8416 30 1 2.9370 -0.1050 -4.2554 31 1 0.7375 -2.1443 1.9994 32 1 1.5295 -2.5969 0.4709 33 1 2.4628 -2.5819 1.9864 34 1 3.9017 -1.6023 3.0165 35 1 2.4485 -1.0890 3.9069 36 1 5.9594 -0.3238 3.1526 37 1 7.3299 1.2144 4.5008 38 1 6.2734 2.6042 6.2377 39 1 2.4764 0.9150 5.2793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:35 Heat of formation + Delta-G solvation = -163.291927 kcal Electronic energy + Delta-G solvation = -26310.814859 eV Core-core repulsion = 21996.435913 eV Total energy + Delta-G solvation = -4314.378946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.26634 -47.77573 -47.73612 -39.98556 -38.75132 -35.49888 -33.34400 -32.60453 -31.83873 -30.47920 -27.61236 -26.20336 -26.14063 -25.28305 -22.66628 -22.05419 -20.72091 -18.62009 -18.54646 -18.46022 -17.91093 -17.30430 -16.41585 -16.21923 -15.67425 -15.49784 -14.79638 -14.64384 -14.41778 -14.38794 -14.17952 -14.02654 -13.92170 -13.88837 -13.29004 -13.15439 -12.74521 -12.71346 -12.60043 -12.43210 -12.35690 -11.98896 -11.78236 -11.41165 -11.29931 -11.24732 -11.08072 -10.75554 -10.46800 -9.81614 -9.41894 -9.28235 -9.20933 -8.81773 -8.63861 -7.72516 -6.21014 -4.23504 0.85925 1.14724 2.55011 3.22638 3.28588 3.33148 3.36342 3.43867 3.60825 3.86121 3.93410 4.32221 4.35366 4.57381 4.69709 4.86812 5.07459 5.11796 5.14712 5.23922 5.33514 5.47509 5.63511 5.65790 5.81500 5.91230 6.01217 6.16621 6.23413 6.30286 6.36336 6.38432 6.55339 6.65702 6.89798 7.04040 7.42910 7.59839 8.08477 8.45214 8.79475 8.88125 9.41699 10.90707 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.003441 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.418710 B = 8135.115956 C = 8226.179247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.589 5.589 13 C 0.081 3.919 14 C 0.504 3.496 15 O -0.549 6.549 16 C -0.106 4.106 17 C -0.055 4.055 18 C -0.071 4.071 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.185 4.185 22 C 0.509 3.491 23 F -0.180 7.180 24 F -0.179 7.179 25 F -0.176 7.176 26 C -0.058 4.058 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 0.132 20.091 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.701 3.299 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.291 3.709 15 O -0.428 6.428 16 C -0.145 4.145 17 C -0.056 4.056 18 C -0.089 4.089 19 C -0.137 4.137 20 C -0.095 4.095 21 C -0.186 4.186 22 C 0.455 3.545 23 F -0.161 7.161 24 F -0.160 7.160 25 F -0.157 7.157 26 C -0.076 4.076 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.635 0.781 19.785 20.132 hybrid contribution -0.139 0.998 -0.030 1.008 sum 3.497 1.779 19.755 20.141 Atomic orbital electron populations 1.22206 0.98301 1.00869 0.99111 1.19316 0.90795 0.94958 0.82764 0.91792 1.21110 1.44812 0.95643 0.94840 0.90364 1.24948 0.93712 0.98488 0.95207 1.69881 1.45107 1.36110 1.01707 0.86902 0.79936 0.86078 0.76977 1.19644 1.21359 1.18840 1.48336 1.49052 1.11706 1.22889 1.21662 0.98940 0.83070 1.02652 1.20259 0.79431 0.87169 0.84046 1.90676 1.58191 1.17135 1.76781 1.20793 1.00347 0.98093 0.95315 1.19367 0.93877 0.97157 0.95158 1.21304 0.93262 0.97114 0.97266 1.21088 1.00426 0.96369 0.95801 1.20865 0.92687 0.98244 0.97734 1.19848 0.95825 1.02560 1.00388 1.18327 0.76475 0.78469 0.81197 1.93210 1.96352 1.79232 1.47302 1.93179 1.78059 1.48628 1.96143 1.93205 1.37364 1.93841 1.91333 1.20736 0.99775 0.93306 0.93768 0.93155 0.95532 0.92645 0.92345 0.93749 0.89897 0.92428 0.87749 0.88155 0.84987 0.84833 0.84994 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.10 37.16 0.34 -2.69 16 2 C 0.22 5.22 2.30 -69.08 -0.16 5.06 16 3 H 0.06 1.67 4.05 -51.93 -0.21 1.46 16 4 C -0.53 -14.09 8.72 -34.44 -0.30 -14.39 16 5 H 0.08 2.20 6.82 -52.49 -0.36 1.84 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.87 22.07 26.99 -169.99 -4.59 17.48 16 9 H -0.27 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.47 6.82 56.52 0.39 -6.08 16 12 N -0.59 -11.57 2.75 -175.26 -0.48 -12.05 16 13 C 0.08 1.21 9.39 59.85 0.56 1.77 16 14 C 0.50 9.58 7.67 -10.99 -0.08 9.50 16 15 O -0.55 -12.79 15.36 5.55 0.09 -12.70 16 16 C -0.11 -1.38 4.38 -29.04 -0.13 -1.50 16 17 C -0.06 -0.74 4.37 -104.62 -0.46 -1.19 16 18 C -0.07 -0.88 9.70 -39.58 -0.38 -1.26 16 19 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 20 C -0.08 -0.86 9.40 -39.58 -0.37 -1.23 16 21 C -0.18 -2.30 5.45 -104.62 -0.57 -2.87 16 22 C 0.51 6.15 3.36 36.01 0.12 6.27 16 23 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16 24 F -0.18 -2.15 16.46 2.25 0.04 -2.11 16 25 F -0.18 -2.30 16.46 2.25 0.04 -2.26 16 26 C -0.06 -0.75 9.05 -39.59 -0.36 -1.11 16 27 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.38 6.56 -51.93 -0.34 1.04 16 33 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 34 H 0.10 1.14 7.34 -51.93 -0.38 0.75 16 35 H 0.10 1.04 8.05 -51.93 -0.42 0.63 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.13 1.18 7.60 -52.49 -0.40 0.78 16 39 H 0.13 1.59 7.60 -52.49 -0.40 1.20 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -32.59 339.91 -5.78 -38.37 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.51 Total: -1.05 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.17 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.29 Total: -37.64 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.59 Total: 17.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.59 -5.78 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.921 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds