Wall clock time and date at job start Tue Mar 31 2020 11:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47419 * 2 1 4 4 C 1.50703 * 109.46991 * 239.99846 * 2 1 3 5 5 H 1.07998 * 120.00112 * 275.00288 * 4 2 1 6 6 C 1.37871 * 120.00223 * 95.00319 * 4 2 1 7 7 N 1.31516 * 120.00618 * 184.91393 * 6 4 2 8 8 Si 1.86807 * 119.99992 * 4.91765 * 6 4 2 9 9 H 1.48501 * 109.46940 * 84.83267 * 8 6 4 10 10 H 1.48502 * 109.47118 * 204.83518 * 8 6 4 11 11 H 1.48502 * 109.46842 * 324.83279 * 8 6 4 12 12 N 1.46497 * 109.47134 * 120.00048 * 2 1 3 13 13 C 1.46501 * 120.00317 * 59.99651 * 12 2 1 14 14 C 1.34781 * 119.99982 * 240.00016 * 12 2 1 15 15 O 1.21283 * 119.99669 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00391 * 180.02562 * 14 12 2 17 17 C 1.50700 * 109.47566 * 179.97438 * 16 14 12 18 18 C 1.38259 * 119.99697 * 269.72365 * 17 16 14 19 19 C 1.38213 * 119.99380 * 180.36268 * 18 17 16 20 20 C 1.38249 * 120.00555 * 359.86566 * 19 18 17 21 21 C 1.38219 * 119.99592 * 0.09113 * 20 19 18 22 22 C 1.50702 * 119.99579 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47114 * 270.01699 * 22 21 20 24 24 F 1.39901 * 109.47233 * 30.02104 * 22 21 20 25 25 F 1.39904 * 109.46904 * 150.01984 * 22 21 20 26 26 C 1.38209 * 119.99866 * 89.99519 * 17 16 14 27 27 H 1.08992 * 109.47359 * 174.98012 * 1 2 3 28 28 H 1.09000 * 109.47197 * 294.98169 * 1 2 3 29 29 H 1.08997 * 109.47273 * 54.97846 * 1 2 3 30 30 H 0.96993 * 120.00509 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47115 * 270.00450 * 13 12 2 32 32 H 1.09002 * 109.46862 * 30.00531 * 13 12 2 33 33 H 1.09001 * 109.47257 * 150.00091 * 13 12 2 34 34 H 1.09004 * 109.46987 * 59.99425 * 16 14 12 35 35 H 1.09000 * 109.46781 * 299.99830 * 16 14 12 36 36 H 1.07993 * 120.00080 * 0.27491 * 18 17 16 37 37 H 1.08007 * 119.99318 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.00523 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.00043 * 359.70542 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3137 1.8790 -2.3175 9 1 3.5993 2.3946 -1.7822 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1254 1.8911 16 6 3.2960 -0.7461 3.3135 17 6 4.1337 0.2010 4.1336 18 6 5.4962 0.2856 3.9144 19 6 6.2655 1.1487 4.6717 20 6 5.6723 1.9294 5.6463 21 6 4.3101 1.8455 5.8647 22 6 3.6635 2.6961 6.9274 23 9 3.6649 2.0042 8.1433 24 9 4.3797 3.8896 7.0691 25 9 2.3458 2.9843 6.5563 26 6 3.5407 0.9808 5.1085 27 1 -0.3633 -1.0236 -0.0899 28 1 -0.3633 0.4340 0.9315 29 1 -0.3634 0.5897 -0.8416 30 1 2.9370 -0.1050 -4.2554 31 1 0.7375 -2.1443 1.9994 32 1 1.5295 -2.5969 0.4709 33 1 2.4628 -2.5819 1.9864 34 1 3.9017 -1.6023 3.0165 35 1 2.4485 -1.0890 3.9069 36 1 5.9594 -0.3238 3.1526 37 1 7.3299 1.2144 4.5008 38 1 6.2734 2.6042 6.2377 39 1 2.4764 0.9150 5.2793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:35 Heat of formation + Delta-G solvation = -182.114428 kcal Electronic energy + Delta-G solvation = -26311.631064 eV Core-core repulsion = 21996.435913 eV Total energy + Delta-G solvation = -4315.195151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.21451 -48.73819 -48.67456 -41.15933 -39.97104 -37.13729 -34.80601 -34.16665 -32.76926 -32.12541 -28.70109 -27.54415 -27.25088 -27.06101 -23.73732 -23.16430 -22.07598 -19.97537 -19.54467 -19.41939 -19.23965 -18.94934 -17.80633 -17.29069 -17.09856 -16.74995 -16.11521 -15.77475 -15.60437 -15.41432 -15.30991 -15.13716 -14.91109 -14.84338 -14.76401 -14.37971 -14.33992 -14.02867 -13.94413 -13.66565 -13.55200 -13.29996 -13.11520 -12.90725 -12.86686 -12.65428 -12.28486 -12.24034 -12.12890 -11.81752 -11.27950 -10.79650 -10.72994 -10.17402 -9.83494 -9.30362 -8.37721 -6.40632 -0.04892 0.24855 1.25598 1.31833 1.40061 1.61560 1.81611 2.24406 2.26891 2.61109 2.68240 2.97685 3.05824 3.38993 3.61669 3.84576 3.91094 4.03027 4.23238 4.26177 4.47304 4.48440 4.51497 4.62042 4.70549 4.74285 4.76688 4.87284 4.93087 5.06103 5.13277 5.17796 5.29579 5.34841 5.46456 5.54559 5.79324 5.84641 6.16774 6.65378 6.80687 7.24905 7.42887 8.77465 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.003441 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.418710 B = 8135.115956 C = 8226.179247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.221 3.779 3 H 0.037 0.963 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.933 5.933 8 Si 0.922 3.078 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.255 1.255 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.496 3.504 15 O -0.600 6.600 16 C -0.092 4.092 17 C -0.074 4.074 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.079 4.079 21 C -0.198 4.198 22 C 0.513 3.487 23 F -0.177 7.177 24 F -0.179 7.179 25 F -0.184 7.184 26 C -0.071 4.071 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -0.257 22.149 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.118 3.882 3 H 0.055 0.945 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.573 5.573 8 Si 0.748 3.252 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.179 1.179 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.286 3.714 15 O -0.482 6.482 16 C -0.131 4.131 17 C -0.075 4.075 18 C -0.102 4.102 19 C -0.136 4.136 20 C -0.096 4.096 21 C -0.199 4.199 22 C 0.459 3.541 23 F -0.158 7.158 24 F -0.160 7.160 25 F -0.165 7.165 26 C -0.089 4.089 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.747 0.361 21.872 22.193 hybrid contribution -0.142 1.070 -0.578 1.225 sum 3.604 1.431 21.293 21.644 Atomic orbital electron populations 1.22063 0.96062 1.01807 0.99782 1.19066 0.92446 0.93467 0.83208 0.94513 1.21376 1.43260 0.94879 0.96009 0.92419 1.25560 0.94273 1.01719 0.95257 1.69974 1.47498 1.37371 1.02433 0.86134 0.79340 0.82388 0.77298 1.21180 1.20361 1.17892 1.48282 1.49294 1.13477 1.21844 1.21915 1.01850 0.80350 1.02484 1.21251 0.78169 0.86806 0.85204 1.90647 1.59769 1.19602 1.78161 1.20783 1.01745 0.97973 0.92584 1.19495 0.94468 0.97888 0.95618 1.21589 0.93289 0.97630 0.97691 1.21441 1.01799 0.95379 0.94962 1.21196 0.92415 0.98261 0.97775 1.19989 0.96533 1.02760 1.00613 1.18297 0.76103 0.78435 0.81285 1.93213 1.96313 1.79150 1.47143 1.93176 1.78003 1.48683 1.96155 1.93187 1.38004 1.93913 1.91437 1.20877 1.00169 0.93658 0.94161 0.91782 0.93522 0.93601 0.92294 0.90757 0.92098 0.88751 0.85152 0.84973 0.84072 0.82058 0.82948 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 9.10 71.98 0.65 -4.87 16 2 C 0.22 10.25 2.30 44.25 0.10 10.35 16 3 H 0.04 1.93 4.05 -2.39 -0.01 1.92 16 4 C -0.52 -27.94 8.72 25.60 0.22 -27.71 16 5 H 0.06 3.30 6.82 -2.91 -0.02 3.28 16 6 C 0.03 1.80 5.47 84.65 0.46 2.26 16 7 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 8 Si 0.92 46.25 26.99 68.60 1.85 48.11 16 9 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.25 -12.25 6.82 99.48 0.68 -11.57 16 12 N -0.60 -22.54 2.75 -826.79 -2.28 -24.81 16 13 C 0.08 2.06 9.39 127.77 1.20 3.26 16 14 C 0.50 18.06 7.67 87.66 0.67 18.73 16 15 O -0.60 -27.78 15.36 -3.04 -0.05 -27.82 16 16 C -0.09 -2.12 4.38 29.10 0.13 -1.99 16 17 C -0.07 -1.83 4.37 -19.87 -0.09 -1.92 16 18 C -0.08 -1.89 9.70 22.27 0.22 -1.67 16 19 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 20 C -0.08 -1.57 9.40 22.27 0.21 -1.37 16 21 C -0.20 -4.61 5.45 -19.87 -0.11 -4.72 16 22 C 0.51 11.72 3.36 71.24 0.24 11.96 16 23 F -0.18 -3.85 17.30 44.97 0.78 -3.08 16 24 F -0.18 -4.05 16.46 44.97 0.74 -3.31 16 25 F -0.18 -4.65 16.46 44.97 0.74 -3.91 16 26 C -0.07 -1.73 9.05 22.27 0.20 -1.53 16 27 H 0.06 2.34 7.84 -2.39 -0.02 2.32 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.94 6.56 -2.39 -0.02 1.92 16 33 H 0.09 1.85 6.44 -2.39 -0.02 1.83 16 34 H 0.13 2.32 7.34 -2.39 -0.02 2.30 16 35 H 0.13 2.20 8.05 -2.39 -0.02 2.18 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.15 2.33 7.60 -2.91 -0.02 2.31 16 39 H 0.14 3.09 7.60 -2.91 -0.02 3.07 16 Total: -1.00 -72.39 339.91 7.48 -64.91 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.06 Total: 7.20 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.34 Total: -1.25 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.98 Total: -80.84 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 2.26 Total: -10.30 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.85 Total: 48.11 kcal Total: -72.39 7.48 -64.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.209 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds