Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38356 * 127.14978 * 2 1 4 4 C 1.39781 * 126.56191 * 0.02562 * 3 2 1 5 5 H 1.07992 * 120.00137 * 5.81963 * 4 3 2 6 6 C 1.40090 * 119.99546 * 185.82280 * 4 3 2 7 7 N 1.30808 * 120.00234 * 354.38020 * 6 4 3 8 8 Si 1.86799 * 119.99519 * 174.38067 * 6 4 3 9 9 H 1.48504 * 109.47102 * 94.98861 * 8 6 4 10 10 H 1.48499 * 109.47014 * 214.98833 * 8 6 4 11 11 H 1.48496 * 109.47480 * 334.98697 * 8 6 4 12 12 N 1.33094 * 106.87279 * 180.29902 * 3 2 1 13 13 N 1.28511 * 109.74513 * 359.73516 * 12 3 2 14 14 C 1.32391 * 110.20424 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25830 * 179.97438 * 14 13 12 16 16 C 1.80997 * 100.00014 * 3.32202 * 15 14 13 17 17 H 1.08996 * 109.25449 * 50.88429 * 16 15 14 18 18 C 1.52740 * 109.25523 * 291.41332 * 16 15 14 19 19 C 1.53326 * 108.37085 * 188.65246 * 18 16 15 20 20 C 1.52733 * 108.38223 * 69.92229 * 19 18 16 21 21 C 1.50640 * 110.59225 * 308.96565 * 20 19 18 22 22 C 1.38907 * 117.74784 * 197.45229 * 21 20 19 23 23 C 1.37941 * 120.54425 * 180.24520 * 22 21 20 24 24 C 1.38265 * 119.76981 * 0.02952 * 23 22 21 25 25 C 1.37930 * 119.76885 * 359.87420 * 24 23 22 26 26 C 1.37655 * 122.56777 * 17.52554 * 21 20 19 27 27 H 1.08998 * 109.46935 * 270.13263 * 1 2 3 28 28 H 1.08992 * 109.47628 * 30.13562 * 1 2 3 29 29 H 1.09000 * 109.47099 * 150.13905 * 1 2 3 30 30 H 0.97003 * 119.99931 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.68551 * 308.37709 * 18 16 15 32 32 H 1.09007 * 109.68075 * 68.89550 * 18 16 15 33 33 H 1.08997 * 109.68193 * 189.64214 * 19 18 16 34 34 H 1.09000 * 109.68500 * 310.16308 * 19 18 16 35 35 H 1.09000 * 109.25724 * 69.25565 * 20 19 18 36 36 H 1.08998 * 109.25191 * 188.72331 * 20 19 18 37 37 H 1.08001 * 119.73258 * 0.25684 * 22 21 20 38 38 H 1.07997 * 120.11135 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.11037 * 179.89512 * 24 23 22 40 40 H 1.07999 * 119.72282 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 0.0005 5 1 0.8640 2.7018 0.0958 6 6 2.8706 3.4553 -0.1227 7 7 4.1426 3.1505 -0.1275 8 14 2.3368 5.2385 -0.2800 9 1 2.3492 5.8789 1.0598 10 1 3.2726 5.9576 -1.1812 11 1 0.9641 5.2965 -0.8436 12 7 3.5490 0.6415 -0.0066 13 7 3.5371 -0.6435 -0.0051 14 6 2.2904 -1.0892 0.0021 15 16 1.7875 -2.7780 0.0061 16 6 3.4038 -3.5870 0.1012 17 1 3.9751 -3.1533 0.9218 18 6 4.1563 -3.3646 -1.2092 19 6 5.4203 -4.2322 -1.1938 20 6 5.0011 -5.6963 -1.3097 21 6 3.9436 -6.0270 -0.2890 22 6 3.7174 -7.3673 -0.0030 23 6 2.7593 -7.7355 0.9184 24 6 2.0170 -6.7632 1.5629 25 6 2.2416 -5.4316 1.2817 26 6 3.2075 -5.0587 0.3557 27 1 -0.3633 0.0024 1.0277 28 1 -0.3634 0.8887 -0.5159 29 1 -0.3633 -0.8912 -0.5117 30 1 4.8088 3.8505 -0.2124 31 1 3.5238 -3.6520 -2.0491 32 1 4.4324 -2.3140 -1.3002 33 1 6.0589 -3.9656 -2.0360 34 1 5.9606 -4.0773 -0.2599 35 1 4.6057 -5.8791 -2.3089 36 1 5.8702 -6.3332 -1.1450 37 1 4.2966 -8.1275 -0.5062 38 1 2.5889 -8.7797 1.1351 39 1 1.2643 -7.0453 2.2841 40 1 1.6617 -4.6727 1.7858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279924604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = 79.435129 kcal Electronic energy + Delta-G solvation = -23226.560269 eV Core-core repulsion = 19939.609121 eV Total energy + Delta-G solvation = -3286.951148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50518 -39.92773 -35.94492 -33.69953 -33.33673 -32.52273 -30.19239 -29.38489 -28.66185 -26.48160 -25.51283 -23.67742 -22.58877 -22.19331 -20.83316 -20.46345 -19.21353 -17.38613 -16.77360 -15.85874 -15.64605 -15.35972 -15.34357 -14.73857 -14.61753 -14.15189 -13.92891 -13.64789 -13.32081 -13.17889 -12.64359 -12.48817 -12.32086 -12.25948 -11.98524 -11.72196 -11.37704 -11.36613 -11.30892 -11.08351 -10.92783 -10.60120 -10.40362 -10.23508 -9.96371 -9.63057 -9.55737 -8.76039 -8.69103 -8.57235 -8.37337 -8.35264 -6.82396 -6.66036 -4.57445 1.25924 1.39028 2.16177 2.80997 2.91038 3.05914 3.09586 3.36170 3.79619 3.86909 4.23723 4.41883 4.66137 4.70837 4.95688 5.03679 5.14171 5.18860 5.30771 5.32038 5.43129 5.55245 5.60555 5.65233 5.71041 5.88202 5.96235 5.99467 6.04034 6.04283 6.09717 6.18905 6.45314 6.51860 6.55622 6.66732 6.68844 6.79848 6.91516 7.02694 7.24343 7.48964 7.89871 8.17709 8.69865 8.85898 10.26727 10.64030 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.027633 B = 0.003339 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.055853 B = 8384.654757 C = 9123.646516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.346 3.654 4 C -0.448 4.448 5 H 0.084 0.916 6 C 0.079 3.921 7 N -0.736 5.736 8 Si 0.919 3.081 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.262 1.262 12 N -0.334 5.334 13 N -0.283 5.283 14 C 0.045 3.955 15 S -0.050 6.050 16 C -0.016 4.016 17 H 0.108 0.892 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.062 4.062 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.058 4.058 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.279 0.721 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 -15.505 -0.415 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.102 3.898 4 C -0.489 4.489 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.360 5.360 8 Si 0.743 3.257 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.129 5.129 14 C -0.327 4.327 15 S 0.182 5.818 16 C -0.145 4.145 17 H 0.126 0.874 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.119 4.119 21 C -0.064 4.064 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.509 -15.892 -0.474 16.096 hybrid contribution -0.639 1.485 0.120 1.621 sum -3.148 -14.407 -0.355 14.751 Atomic orbital electron populations 1.21483 0.78602 1.02690 1.01566 1.46052 1.06057 1.05379 1.64249 1.21611 0.84778 0.88405 0.95013 1.18098 0.95176 0.86532 1.49057 0.89837 1.25788 0.94327 1.01189 0.93349 1.70012 1.00815 1.34874 1.30302 0.86126 0.79581 0.80983 0.78981 1.19450 1.19942 1.18620 1.75456 1.15272 0.97936 1.29446 1.74468 1.15085 1.07456 1.15871 1.25392 0.91563 0.92709 1.22987 1.84513 1.10595 0.91512 1.95173 1.21896 0.96562 0.92926 1.03090 0.87427 1.21916 0.95807 1.02785 0.94751 1.21556 0.97798 0.93550 1.02542 1.20533 0.96315 0.97620 0.97392 1.19608 0.97163 0.92448 0.97144 1.21099 0.99057 0.95208 0.98996 1.21051 0.96534 0.99182 0.97173 1.21041 1.00073 0.92860 1.00345 1.21394 0.97446 0.96663 0.97457 1.19208 0.96742 0.92997 0.97054 0.92634 0.90344 0.91578 0.91011 0.91436 0.88386 0.91154 0.91458 0.90584 0.90929 0.86248 0.86303 0.86113 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.86 59.85 0.65 2.52 16 2 N -0.52 -12.45 3.26 -123.18 -0.40 -12.85 16 3 C 0.35 9.65 7.53 -154.81 -1.17 8.48 16 4 C -0.45 -11.87 9.02 -38.31 -0.35 -12.21 16 5 H 0.08 2.01 7.40 -52.49 -0.39 1.62 16 6 C 0.08 2.01 5.49 -17.29 -0.09 1.92 16 7 N -0.74 -20.14 11.96 55.56 0.66 -19.48 16 8 Si 0.92 18.49 29.57 -169.99 -5.03 13.46 16 9 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 12 N -0.33 -9.93 10.50 31.26 0.33 -9.60 16 13 N -0.28 -7.59 9.88 30.89 0.31 -7.29 16 14 C 0.05 1.08 7.90 -87.28 -0.69 0.39 16 15 S -0.05 -0.91 19.57 -107.50 -2.10 -3.02 16 16 C -0.02 -0.27 2.15 -28.05 -0.06 -0.33 16 17 H 0.11 2.02 8.10 -51.91 -0.42 1.60 16 18 C -0.11 -1.87 5.00 -26.70 -0.13 -2.00 16 19 C -0.12 -1.52 5.98 -26.70 -0.16 -1.68 16 20 C -0.08 -0.92 5.67 -28.05 -0.16 -1.08 16 21 C -0.06 -0.79 5.74 -104.62 -0.60 -1.39 16 22 C -0.13 -1.38 9.61 -39.44 -0.38 -1.76 16 23 C -0.12 -1.27 10.05 -39.68 -0.40 -1.67 16 24 C -0.13 -1.43 10.05 -39.68 -0.40 -1.83 16 25 C -0.11 -1.50 8.96 -39.45 -0.35 -1.85 16 26 C -0.06 -0.85 5.43 -104.62 -0.57 -1.42 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.36 7.60 -51.93 -0.39 0.96 16 29 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.10 1.96 6.33 -51.92 -0.33 1.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 37 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.80 7.05 -52.49 -0.37 1.43 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -32.01 341.01 -11.19 -43.21 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.24 Total: 4.35 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -4.86 Total: -13.91 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.90 Total: -49.22 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.10 Total: -3.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.01 -11.19 -43.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279924604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.641 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds