Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38356 * 127.14978 * 2 1 4 4 C 1.39781 * 126.56191 * 0.02562 * 3 2 1 5 5 H 1.07992 * 120.00137 * 5.81963 * 4 3 2 6 6 C 1.40090 * 119.99546 * 185.82280 * 4 3 2 7 7 N 1.30808 * 120.00234 * 354.38020 * 6 4 3 8 8 Si 1.86799 * 119.99519 * 174.38067 * 6 4 3 9 9 H 1.48504 * 109.47102 * 94.98861 * 8 6 4 10 10 H 1.48499 * 109.47014 * 214.98833 * 8 6 4 11 11 H 1.48496 * 109.47480 * 334.98697 * 8 6 4 12 12 N 1.33094 * 106.87279 * 180.29902 * 3 2 1 13 13 N 1.28511 * 109.74513 * 359.73516 * 12 3 2 14 14 C 1.32391 * 110.20424 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25830 * 179.97438 * 14 13 12 16 16 C 1.80997 * 100.00014 * 3.32202 * 15 14 13 17 17 H 1.08996 * 109.25449 * 50.88429 * 16 15 14 18 18 C 1.52740 * 109.25523 * 291.41332 * 16 15 14 19 19 C 1.53326 * 108.37085 * 188.65246 * 18 16 15 20 20 C 1.52733 * 108.38223 * 69.92229 * 19 18 16 21 21 C 1.50640 * 110.59225 * 308.96565 * 20 19 18 22 22 C 1.38907 * 117.74784 * 197.45229 * 21 20 19 23 23 C 1.37941 * 120.54425 * 180.24520 * 22 21 20 24 24 C 1.38265 * 119.76981 * 0.02952 * 23 22 21 25 25 C 1.37930 * 119.76885 * 359.87420 * 24 23 22 26 26 C 1.37655 * 122.56777 * 17.52554 * 21 20 19 27 27 H 1.08998 * 109.46935 * 270.13263 * 1 2 3 28 28 H 1.08992 * 109.47628 * 30.13562 * 1 2 3 29 29 H 1.09000 * 109.47099 * 150.13905 * 1 2 3 30 30 H 0.97003 * 119.99931 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.68551 * 308.37709 * 18 16 15 32 32 H 1.09007 * 109.68075 * 68.89550 * 18 16 15 33 33 H 1.08997 * 109.68193 * 189.64214 * 19 18 16 34 34 H 1.09000 * 109.68500 * 310.16308 * 19 18 16 35 35 H 1.09000 * 109.25724 * 69.25565 * 20 19 18 36 36 H 1.08998 * 109.25191 * 188.72331 * 20 19 18 37 37 H 1.08001 * 119.73258 * 0.25684 * 22 21 20 38 38 H 1.07997 * 120.11135 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.11037 * 179.89512 * 24 23 22 40 40 H 1.07999 * 119.72282 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 0.0005 5 1 0.8640 2.7018 0.0958 6 6 2.8706 3.4553 -0.1227 7 7 4.1426 3.1505 -0.1275 8 14 2.3368 5.2385 -0.2800 9 1 2.3492 5.8789 1.0598 10 1 3.2726 5.9576 -1.1812 11 1 0.9641 5.2965 -0.8436 12 7 3.5490 0.6415 -0.0066 13 7 3.5371 -0.6435 -0.0051 14 6 2.2904 -1.0892 0.0021 15 16 1.7875 -2.7780 0.0061 16 6 3.4038 -3.5870 0.1012 17 1 3.9751 -3.1533 0.9218 18 6 4.1563 -3.3646 -1.2092 19 6 5.4203 -4.2322 -1.1938 20 6 5.0011 -5.6963 -1.3097 21 6 3.9436 -6.0270 -0.2890 22 6 3.7174 -7.3673 -0.0030 23 6 2.7593 -7.7355 0.9184 24 6 2.0170 -6.7632 1.5629 25 6 2.2416 -5.4316 1.2817 26 6 3.2075 -5.0587 0.3557 27 1 -0.3633 0.0024 1.0277 28 1 -0.3634 0.8887 -0.5159 29 1 -0.3633 -0.8912 -0.5117 30 1 4.8088 3.8505 -0.2124 31 1 3.5238 -3.6520 -2.0491 32 1 4.4324 -2.3140 -1.3002 33 1 6.0589 -3.9656 -2.0360 34 1 5.9606 -4.0773 -0.2599 35 1 4.6057 -5.8791 -2.3089 36 1 5.8702 -6.3332 -1.1450 37 1 4.2966 -8.1275 -0.5062 38 1 2.5889 -8.7797 1.1351 39 1 1.2643 -7.0453 2.2841 40 1 1.6617 -4.6727 1.7858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279924604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = 63.294066 kcal Electronic energy + Delta-G solvation = -23227.260198 eV Core-core repulsion = 19939.609121 eV Total energy + Delta-G solvation = -3287.651077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45501 -40.92082 -37.00752 -35.62546 -35.16039 -33.57115 -31.44363 -31.05744 -29.78098 -28.21837 -27.39176 -24.77893 -23.66819 -23.18928 -22.77701 -22.30276 -20.30865 -19.27208 -18.17819 -17.34383 -17.00555 -16.69493 -16.55292 -16.38582 -16.08779 -15.54550 -15.13191 -15.05353 -14.65091 -14.19574 -13.97090 -13.88368 -13.75023 -13.57113 -13.28984 -13.00573 -12.95702 -12.81715 -12.75429 -12.37499 -12.16608 -11.99893 -11.83346 -11.66153 -11.51138 -11.26138 -11.17861 -10.57641 -10.37498 -10.24418 -9.67942 -9.48424 -8.55689 -8.54177 -6.58908 0.15712 0.46177 0.70171 1.18360 1.26487 1.40678 1.57063 1.61648 2.17756 2.44604 2.50535 2.86142 3.32495 3.52723 3.66131 3.92428 4.03314 4.05621 4.15006 4.25042 4.31619 4.39715 4.42090 4.53855 4.58648 4.64526 4.70493 4.86459 4.88787 4.94168 4.99700 5.06072 5.12894 5.15572 5.29310 5.35885 5.36958 5.56171 5.60196 5.63333 5.71769 6.04137 6.12398 6.21240 6.75065 6.91908 8.40334 8.64881 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.027633 B = 0.003339 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.055853 B = 8384.654757 C = 9123.646516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.523 5.523 3 C 0.317 3.683 4 C -0.473 4.473 5 H 0.102 0.898 6 C 0.029 3.971 7 N -0.787 5.787 8 Si 1.006 2.994 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.389 5.389 13 N -0.320 5.320 14 C 0.052 3.948 15 S -0.009 6.009 16 C -0.009 4.009 17 H 0.077 0.923 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.071 4.071 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.084 4.084 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.284 0.716 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -17.946 -0.727 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.224 5.224 3 C 0.071 3.929 4 C -0.513 4.513 5 H 0.120 0.880 6 C -0.191 4.191 7 N -0.412 5.412 8 Si 0.825 3.175 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.171 1.171 12 N -0.235 5.235 13 N -0.164 5.164 14 C -0.321 4.321 15 S 0.222 5.778 16 C -0.139 4.139 17 H 0.095 0.905 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.073 4.073 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.086 4.086 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.078 -18.348 -0.783 18.812 hybrid contribution -0.199 1.968 0.250 1.994 sum -4.277 -16.381 -0.532 16.938 Atomic orbital electron populations 1.21827 0.75441 1.04366 1.03252 1.46396 1.08048 1.04513 1.63472 1.22035 0.85152 0.89868 0.95867 1.18612 0.96429 0.86556 1.49744 0.88005 1.26986 0.93908 1.06333 0.91919 1.70160 1.02513 1.36882 1.31672 0.84847 0.79596 0.73835 0.79219 1.18596 1.19523 1.17062 1.75318 1.17284 0.99323 1.31585 1.74381 1.16933 1.06803 1.18312 1.26434 0.91144 0.95420 1.19093 1.84282 1.11818 0.87176 1.94501 1.21874 0.95067 0.94774 1.02142 0.90496 1.21790 0.97566 1.00892 0.94663 1.21526 0.96121 0.94825 1.02542 1.20551 0.97040 0.95906 0.97769 1.19848 0.97141 0.93065 0.97204 1.21460 0.99090 0.94764 0.98762 1.21496 0.95197 1.00646 0.95789 1.21341 1.00555 0.91919 1.00595 1.21420 0.97725 0.97836 0.97823 1.19102 0.98884 0.91360 0.99218 0.90850 0.89244 0.89340 0.90552 0.91125 0.92714 0.89997 0.92477 0.89218 0.88214 0.83143 0.82922 0.83820 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.40 10.86 127.77 1.39 4.79 16 2 N -0.52 -25.99 3.26 -543.63 -1.77 -27.76 16 3 C 0.32 18.49 7.53 133.23 1.00 19.49 16 4 C -0.47 -25.74 9.02 23.09 0.21 -25.53 16 5 H 0.10 4.92 7.40 -2.91 -0.02 4.90 16 6 C 0.03 1.53 5.49 85.29 0.47 2.00 16 7 N -0.79 -45.17 11.96 21.86 0.26 -44.91 16 8 Si 1.01 38.22 29.57 68.60 2.03 40.25 16 9 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 10 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 12 N -0.39 -24.66 10.50 -55.02 -0.58 -25.23 16 13 N -0.32 -18.38 9.88 -56.17 -0.56 -18.93 16 14 C 0.05 2.61 7.90 179.18 1.41 4.03 16 15 S -0.01 -0.34 19.57 -56.49 -1.11 -1.45 16 16 C -0.01 -0.33 2.15 29.74 0.06 -0.27 16 17 H 0.08 3.13 8.10 -2.40 -0.02 3.11 16 18 C -0.11 -3.78 5.00 30.62 0.15 -3.63 16 19 C -0.11 -2.94 5.98 30.61 0.18 -2.75 16 20 C -0.08 -1.53 5.67 29.74 0.17 -1.36 16 21 C -0.07 -1.65 5.74 -19.86 -0.11 -1.77 16 22 C -0.12 -2.20 9.61 22.36 0.21 -1.99 16 23 C -0.11 -1.89 10.05 22.21 0.22 -1.67 16 24 C -0.13 -2.52 10.05 22.20 0.22 -2.30 16 25 C -0.13 -3.37 8.96 22.36 0.20 -3.17 16 26 C -0.08 -2.39 5.43 -19.86 -0.11 -2.50 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 3.03 7.60 -2.39 -0.02 3.01 16 29 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 30 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 31 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 32 H 0.05 2.37 6.33 -2.38 -0.02 2.35 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 37 H 0.15 1.77 8.05 -2.91 -0.02 1.75 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.12 3.30 7.05 -2.91 -0.02 3.28 16 Total: -1.00 -75.77 341.01 5.02 -70.75 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.05 Total: 23.93 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 5.69 Total: -16.64 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -2.64 Total: -116.84 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.11 Total: -1.45 kcal Total: -75.77 5.02 -70.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279924604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.040 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds