Wall clock time and date at job start Tue Mar 31 2020 10:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47169 * 57.73888 * 3 2 1 5 5 C 1.36929 * 120.00207 * 264.27476 * 4 3 2 6 6 H 1.07999 * 120.00189 * 198.95289 * 5 4 3 7 7 C 1.38810 * 120.00208 * 18.95771 * 5 4 3 8 8 N 1.31620 * 119.99632 * 11.43568 * 7 5 4 9 9 Si 1.86805 * 120.00313 * 191.43852 * 7 5 4 10 10 H 1.48497 * 109.47129 * 84.97712 * 9 7 5 11 11 H 1.48501 * 109.46924 * 204.98159 * 9 7 5 12 12 H 1.48503 * 109.46852 * 324.97523 * 9 7 5 13 13 C 1.46508 * 119.99670 * 84.27293 * 4 3 2 14 14 C 1.50692 * 109.47200 * 269.99885 * 13 4 3 15 15 N 1.31138 * 126.55044 * 90.00377 * 14 13 4 16 16 C 1.34488 * 105.61343 * 180.02562 * 15 14 13 17 17 C 1.50701 * 126.28758 * 179.97438 * 16 15 14 18 18 C 1.50708 * 109.47071 * 89.99958 * 17 16 15 19 19 C 1.38267 * 119.98590 * 90.00062 * 18 17 16 20 20 C 1.38221 * 120.05079 * 180.02562 * 19 18 17 21 21 C 1.38224 * 120.02665 * 0.25137 * 20 19 18 22 22 C 1.38443 * 119.96917 * 359.47462 * 21 20 19 23 23 F 1.35106 * 120.02144 * 180.25032 * 22 21 20 24 24 C 1.38177 * 119.98716 * 270.02756 * 18 17 16 25 25 N 1.29946 * 107.42832 * 0.24013 * 16 15 14 26 26 O 1.21304 * 110.24863 * 359.57896 * 25 16 15 27 27 H 4.40641 * 5.51362 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.46833 * 297.73923 * 3 2 1 29 29 H 1.09000 * 109.46854 * 177.74096 * 3 2 1 30 30 H 0.97008 * 119.99452 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46705 * 150.00104 * 13 4 3 32 32 H 1.09001 * 109.46680 * 30.00594 * 13 4 3 33 33 H 1.09001 * 109.47079 * 330.00423 * 17 16 15 34 34 H 1.08998 * 109.47535 * 209.99944 * 17 16 15 35 35 H 1.07999 * 119.97272 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.98944 * 179.97438 * 20 19 18 37 37 H 1.07994 * 120.01549 * 179.72132 * 21 20 19 38 38 H 1.07998 * 120.00975 * 359.97136 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7364 -1.1679 5 6 3.4751 -2.0575 -1.0507 6 1 4.1080 -2.5201 -1.7935 7 6 3.0065 -2.8023 0.0229 8 7 2.0633 -2.3145 0.8005 9 14 3.7148 -4.4969 0.3642 10 1 4.9491 -4.3626 1.1787 11 1 2.7178 -5.3097 1.1062 12 1 4.0402 -5.1653 -0.9214 13 6 3.2592 -0.0598 -2.4615 14 6 1.9693 -0.1999 -3.2278 15 7 0.9467 0.6203 -3.1922 16 6 0.0328 0.0959 -4.0280 17 6 -1.3264 0.6691 -4.3366 18 6 -1.2220 1.6029 -5.5149 19 6 -1.3908 1.1173 -6.7985 20 6 -1.2948 1.9724 -7.8802 21 6 -1.0248 3.3131 -7.6802 22 6 -0.8613 3.8015 -6.3952 23 9 -0.6024 5.1128 -6.1982 24 6 -0.9572 2.9438 -5.3122 25 7 0.5346 -0.9988 -4.5162 26 8 1.6486 -1.1840 -4.0732 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.4775 0.9096 29 1 3.0089 1.0277 -0.0405 30 1 1.7361 -2.8348 1.5510 31 1 4.0711 -0.5118 -3.0312 32 1 3.4730 0.9967 -2.2998 33 1 -1.6947 1.2179 -3.4698 34 1 -2.0167 -0.1402 -4.5744 35 1 -1.5977 0.0691 -6.9559 36 1 -1.4264 1.5919 -8.8824 37 1 -0.9454 3.9802 -8.5258 38 1 -0.8254 3.3228 -4.3095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281285253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:49 Heat of formation + Delta-G solvation = 115.728161 kcal Electronic energy + Delta-G solvation = -25242.658942 eV Core-core repulsion = 21391.068401 eV Total energy + Delta-G solvation = -3851.590540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.93635 -46.26501 -40.21736 -38.20180 -36.85093 -34.71126 -33.50140 -33.34572 -32.25894 -31.53709 -28.86173 -28.54323 -27.91086 -24.73490 -24.12265 -23.72473 -22.91104 -21.72247 -19.41550 -18.98919 -18.53580 -18.23395 -17.96192 -17.39519 -17.16053 -17.00203 -16.65791 -15.98640 -15.60284 -15.47333 -15.24209 -15.10151 -14.60780 -14.48509 -14.32197 -13.65531 -13.39624 -13.30807 -13.12526 -13.05783 -12.77285 -12.71248 -12.48052 -12.46133 -12.25792 -12.07122 -11.89320 -11.81292 -10.97246 -10.92644 -10.60634 -10.25060 -10.03448 -9.73408 -9.17298 -7.89051 -5.41306 0.04783 0.16899 0.39128 1.42734 1.51378 1.52892 1.58971 2.17869 2.34073 2.46284 2.53176 2.65131 2.97229 3.18288 3.25338 3.32351 3.61619 3.73647 3.78565 4.06238 4.09633 4.16228 4.20557 4.33087 4.45792 4.56878 4.61736 4.73473 4.84193 4.93347 5.04062 5.05444 5.10259 5.23374 5.28450 5.38579 5.45094 5.60953 5.67505 5.86758 6.19963 7.00217 7.38432 7.38953 7.66302 8.06240 9.09347 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.003319 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.331212 B = 8433.894566 C = 8792.517806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.111 4.111 3 C 0.265 3.735 4 N -0.572 5.572 5 C -0.277 4.277 6 H 0.091 0.909 7 C -0.039 4.039 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.276 1.276 11 H -0.305 1.305 12 H -0.272 1.272 13 C 0.218 3.782 14 C 0.182 3.818 15 N -0.499 5.499 16 C 0.168 3.832 17 C 0.016 3.984 18 C -0.061 4.061 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.150 4.150 22 C 0.079 3.921 23 F -0.148 7.148 24 C -0.148 4.148 25 N -0.415 5.415 26 O 0.048 5.952 27 H 0.205 0.795 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.249 0.751 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 9.590 -14.147 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.113 4.113 3 C 0.140 3.860 4 N -0.290 5.290 5 C -0.407 4.407 6 H 0.109 0.891 7 C -0.236 4.236 8 N -0.558 5.558 9 Si 0.799 3.201 10 H -0.202 1.202 11 H -0.232 1.232 12 H -0.197 1.197 13 C 0.088 3.912 14 C -0.042 4.042 15 N -0.234 5.234 16 C -0.105 4.105 17 C -0.022 4.022 18 C -0.063 4.063 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.168 4.168 22 C 0.059 3.941 23 F -0.127 7.127 24 C -0.167 4.167 25 N -0.130 5.130 26 O -0.003 6.003 27 H 0.222 0.778 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.176 0.824 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.128 9.377 -14.390 17.925 hybrid contribution -0.262 -1.018 0.873 1.366 sum -5.390 8.360 -13.517 16.782 Atomic orbital electron populations 1.24656 0.96148 1.07460 1.04267 1.24448 0.95881 0.94269 0.96741 1.18096 0.82482 0.93993 0.91395 1.44643 1.72337 1.09306 1.02730 1.19733 1.24555 0.86935 1.09448 0.89093 1.25769 0.97070 1.01361 0.99421 1.70231 1.28356 1.38291 1.18879 0.85240 0.77237 0.79691 0.77927 1.20233 1.23202 1.19703 1.20414 0.86135 1.00632 0.84026 1.31745 1.01608 0.81900 0.88911 1.71854 1.01270 1.29626 1.20602 1.25965 1.00243 0.90278 0.94031 1.18924 0.87014 0.98498 0.97790 1.19399 0.99596 0.92623 0.94646 1.21420 0.99815 1.01247 0.91517 1.21353 0.96734 0.91805 1.00424 1.21490 1.02202 0.97722 0.95434 1.17886 1.03234 0.77918 0.95017 1.91480 1.91789 1.33281 1.96119 1.21128 1.02772 0.93548 0.99219 1.74440 0.95910 1.19981 1.22703 1.85215 1.24634 1.44694 1.45779 0.77765 0.89384 0.91208 0.94166 0.87058 0.86363 0.87322 0.86781 0.84155 0.81606 0.82357 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.11 19.25 74.32 1.43 -12.68 16 2 C -0.11 -5.29 11.31 31.13 0.35 -4.94 16 3 C 0.26 11.81 5.45 84.58 0.46 12.27 16 4 N -0.57 -25.26 2.49 -716.91 -1.79 -27.05 16 5 C -0.28 -13.57 9.71 84.03 0.82 -12.76 16 6 H 0.09 4.23 7.84 -2.91 -0.02 4.21 16 7 C -0.04 -2.02 5.11 84.86 0.43 -1.59 16 8 N -0.91 -50.01 8.98 21.65 0.19 -49.82 16 9 Si 0.97 42.44 29.57 68.60 2.03 44.47 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 C 0.22 7.77 6.32 85.63 0.54 8.31 16 14 C 0.18 7.20 7.78 88.38 0.69 7.89 16 15 N -0.50 -19.54 11.55 -303.21 -3.50 -23.04 16 16 C 0.17 6.08 7.45 138.46 1.03 7.12 16 17 C 0.02 0.44 5.97 29.10 0.17 0.61 16 18 C -0.06 -1.49 5.11 -19.87 -0.10 -1.59 16 19 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 20 C -0.09 -1.39 10.04 22.26 0.22 -1.17 16 21 C -0.15 -2.68 10.03 22.32 0.22 -2.46 16 22 C 0.08 1.82 7.30 22.38 0.16 1.98 16 23 F -0.15 -3.67 17.27 44.97 0.78 -2.89 16 24 C -0.15 -3.68 9.68 22.31 0.22 -3.47 16 25 N -0.42 -16.42 12.16 -60.32 -0.73 -17.15 16 26 O 0.05 2.00 11.31 74.86 0.85 2.85 16 27 H 0.21 8.14 7.80 -4.42 -0.03 8.10 16 28 H 0.09 4.36 6.22 -2.38 -0.01 4.34 16 29 H 0.07 2.63 7.97 -2.39 -0.02 2.61 16 30 H 0.25 13.62 8.31 -92.70 -0.77 12.85 16 31 H 0.11 3.40 8.03 -2.39 -0.02 3.38 16 32 H 0.12 3.53 7.95 -2.39 -0.02 3.52 16 33 H 0.11 2.79 8.09 -2.39 -0.02 2.77 16 34 H 0.11 2.67 8.09 -2.39 -0.02 2.65 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -64.33 347.39 5.78 -58.55 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.09 Total: 18.80 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.87 Total: -4.74 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -5.83 Total: -117.05 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.85 Total: 2.85 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.33 5.78 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281285253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.282 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds