Wall clock time and date at job start Tue Mar 31 2020 11:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47143 * 2 1 4 4 C 1.46500 * 119.99807 * 269.99872 * 3 2 1 5 5 C 1.50704 * 109.46891 * 270.00281 * 4 3 2 6 6 H 1.07997 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99960 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00041 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00353 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46582 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47201 * 119.99833 * 9 7 5 12 12 H 1.48501 * 109.47051 * 239.99979 * 9 7 5 13 13 C 1.34775 * 120.00172 * 90.00025 * 3 2 1 14 14 O 1.21592 * 120.00082 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00000 * 359.97438 * 13 3 2 16 16 C 1.40185 * 120.00182 * 184.64656 * 15 13 3 17 17 C 1.39364 * 120.42226 * 325.02113 * 16 15 13 18 18 C 1.38332 * 118.42935 * 180.02562 * 17 16 15 19 19 C 1.38901 * 119.17816 * 359.97438 * 18 17 16 20 20 O 1.35763 * 119.60627 * 179.97438 * 19 18 17 21 21 C 1.42906 * 116.99992 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47023 * 300.00665 * 21 20 19 23 23 F 1.39899 * 109.46679 * 60.00786 * 21 20 19 24 24 N 1.32199 * 120.78724 * 0.02562 * 19 18 17 25 25 C 1.31961 * 121.71401 * 359.97438 * 24 19 18 26 26 H 1.09005 * 109.47207 * 300.00630 * 1 2 3 27 27 H 1.08999 * 109.46935 * 59.99706 * 1 2 3 28 28 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46982 * 239.99552 * 2 1 3 30 30 H 1.09004 * 109.46893 * 119.99817 * 2 1 3 31 31 H 1.09000 * 109.47165 * 29.99977 * 4 3 2 32 32 H 1.08993 * 109.47284 * 149.99993 * 4 3 2 33 33 H 0.97004 * 120.00423 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00135 * 4.65287 * 15 13 3 35 35 H 1.08002 * 120.78567 * 0.02562 * 17 16 15 36 36 H 1.07992 * 120.41041 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46556 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.63028 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1492 2.3894 -2.8780 8 7 3.3489 3.1247 -3.6187 9 14 5.9136 2.0964 -3.4169 10 1 6.6015 1.2422 -2.4157 11 1 5.9215 1.4167 -4.7372 12 1 6.6205 3.3978 -3.5259 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1628 1.1671 15 7 2.0179 1.3815 2.3344 16 6 2.1577 2.0719 3.5464 17 6 3.1381 3.0517 3.6914 18 6 3.2399 3.7068 4.9055 19 6 2.3675 3.3693 5.9323 20 8 2.4600 4.0065 7.1276 21 6 1.5355 3.6151 8.1446 22 9 0.2288 3.8403 7.6986 23 9 1.7034 2.2558 8.4294 24 7 1.4489 2.4344 5.7599 25 6 1.3224 1.7887 4.6161 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 3.6750 3.5151 -4.4446 34 1 1.7592 0.4466 2.3358 35 1 3.8027 3.2937 2.8752 36 1 3.9878 4.4718 5.0528 37 1 1.7176 4.2007 9.0458 38 1 0.5597 1.0312 4.5120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283133062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:43 Heat of formation + Delta-G solvation = -125.626767 kcal Electronic energy + Delta-G solvation = -26079.558008 eV Core-core repulsion = 21786.732307 eV Total energy + Delta-G solvation = -4292.825700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.15030 -47.27570 -40.88181 -39.65534 -37.88241 -35.58981 -34.56396 -32.78079 -32.21664 -30.22738 -29.59012 -27.07093 -26.21573 -23.75051 -23.52838 -23.13778 -22.17028 -19.75854 -19.13183 -18.41925 -17.96211 -17.92816 -16.92718 -16.47628 -16.43050 -15.58718 -15.20594 -15.05944 -14.63393 -14.38142 -14.25170 -14.00367 -13.79667 -13.60005 -13.35859 -13.25089 -13.13473 -12.72428 -12.69122 -12.42925 -12.24516 -12.12542 -11.81225 -11.27161 -10.98779 -10.85194 -10.61639 -10.51961 -10.18216 -9.88081 -9.70082 -9.67382 -9.20191 -8.47994 -8.09079 -7.68164 -6.08622 -4.13617 1.04808 1.27132 2.36795 3.03240 3.26958 3.34937 3.38604 3.41361 3.53961 3.88996 4.08329 4.26003 4.37702 4.44056 4.61367 4.84258 4.98392 5.13527 5.19952 5.25817 5.49717 5.55053 5.59930 5.61966 5.89903 6.08715 6.13952 6.30095 6.39945 6.60415 6.69700 6.98249 7.27739 7.42276 7.56840 7.69776 7.88647 8.17617 8.46772 8.86813 9.11692 9.51964 10.99271 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002971 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.567096 B = 9421.334698 C =10174.687247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.260 3.740 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.699 3.301 14 O -0.570 6.570 15 N -0.690 5.690 16 C 0.112 3.888 17 C -0.047 4.047 18 C -0.151 4.151 19 C 0.272 3.728 20 O -0.320 6.320 21 C 0.425 3.575 22 F -0.195 7.195 23 F -0.196 7.196 24 N -0.505 5.505 25 C 0.104 3.896 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.174 0.826 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 -4.096 19.958 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.341 5.341 16 C 0.013 3.987 17 C -0.075 4.075 18 C -0.172 4.172 19 C 0.093 3.907 20 O -0.232 6.232 21 C 0.334 3.666 22 F -0.177 7.177 23 F -0.178 7.178 24 N -0.226 5.226 25 C -0.055 4.055 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.980 -3.200 20.399 21.241 hybrid contribution 1.053 -0.653 -1.050 1.623 sum -3.927 -3.852 19.350 20.117 Atomic orbital electron populations 1.22250 0.96534 1.01567 1.02629 1.21394 0.93683 0.84188 1.02526 1.47631 1.66685 1.13344 1.06157 1.19261 0.96314 0.93522 0.76818 1.21478 0.96941 1.31961 1.06274 0.92396 1.24929 0.97868 0.94899 0.96368 1.69939 1.35598 1.33425 1.14323 0.86444 0.84591 0.78066 0.78304 1.19837 1.20977 1.20860 1.15932 0.79199 0.84735 0.80050 1.90884 1.51483 1.16790 1.85452 1.42882 1.73893 1.14140 1.03161 1.18488 0.96047 0.97215 0.86997 1.21821 0.95631 0.93508 0.96541 1.21033 1.01377 1.03612 0.91182 1.19503 0.93778 0.91864 0.85533 1.86778 1.55771 1.60372 1.20307 1.23052 0.74346 0.79371 0.89809 1.93101 1.39470 1.94258 1.90832 1.93093 1.94777 1.36481 1.93403 1.67223 1.20953 1.08732 1.25650 1.22074 0.97040 0.99323 0.87112 0.93022 0.91771 0.92001 0.89387 0.92412 0.94699 0.93684 0.92717 0.75818 0.81651 0.83638 0.81015 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.60 -12.06 2.46 -180.80 -0.44 -12.50 16 4 C 0.26 6.52 5.16 -5.19 -0.03 6.49 16 5 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.70 13.98 8.14 -86.92 -0.71 13.27 16 14 O -0.57 -13.68 13.40 5.28 0.07 -13.61 16 15 N -0.69 -10.33 5.24 -14.10 -0.07 -10.41 16 16 C 0.11 1.65 6.32 -83.47 -0.53 1.12 16 17 C -0.05 -0.73 8.80 -39.13 -0.34 -1.08 16 18 C -0.15 -2.06 10.04 -39.30 -0.39 -2.45 16 19 C 0.27 3.80 7.19 -17.15 -0.12 3.67 16 20 O -0.32 -3.78 10.41 -19.00 -0.20 -3.98 16 21 C 0.42 4.00 6.06 101.05 0.61 4.61 16 22 F -0.19 -2.31 16.57 2.25 0.04 -2.28 16 23 F -0.20 -2.23 16.57 2.25 0.04 -2.20 16 24 N -0.50 -7.24 8.06 -13.18 -0.11 -7.35 16 25 C 0.10 1.36 11.11 -17.35 -0.19 1.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.67 6.30 -51.93 -0.33 0.35 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.40 4.71 6.52 -40.82 -0.27 4.44 16 35 H 0.17 2.91 6.32 -52.49 -0.33 2.58 16 36 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.17 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -34.15 338.18 -5.86 -40.01 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.23 Total: 2.63 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -1.77 Total: 13.44 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.11 Total: -55.51 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.13 Total: -17.59 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.07 Total: -4.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.15 -5.86 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283133062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.612 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds