Wall clock time and date at job start Tue Mar 31 2020 11:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47143 * 2 1 4 4 C 1.46500 * 119.99807 * 269.99872 * 3 2 1 5 5 C 1.50704 * 109.46891 * 270.00281 * 4 3 2 6 6 H 1.07997 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99960 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00041 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00353 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46582 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47201 * 119.99833 * 9 7 5 12 12 H 1.48501 * 109.47051 * 239.99979 * 9 7 5 13 13 C 1.34775 * 120.00172 * 90.00025 * 3 2 1 14 14 O 1.21592 * 120.00082 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00000 * 359.97438 * 13 3 2 16 16 C 1.40185 * 120.00182 * 184.64656 * 15 13 3 17 17 C 1.39364 * 120.42226 * 325.02113 * 16 15 13 18 18 C 1.38332 * 118.42935 * 180.02562 * 17 16 15 19 19 C 1.38901 * 119.17816 * 359.97438 * 18 17 16 20 20 O 1.35763 * 119.60627 * 179.97438 * 19 18 17 21 21 C 1.42906 * 116.99992 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47023 * 300.00665 * 21 20 19 23 23 F 1.39899 * 109.46679 * 60.00786 * 21 20 19 24 24 N 1.32199 * 120.78724 * 0.02562 * 19 18 17 25 25 C 1.31961 * 121.71401 * 359.97438 * 24 19 18 26 26 H 1.09005 * 109.47207 * 300.00630 * 1 2 3 27 27 H 1.08999 * 109.46935 * 59.99706 * 1 2 3 28 28 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46982 * 239.99552 * 2 1 3 30 30 H 1.09004 * 109.46893 * 119.99817 * 2 1 3 31 31 H 1.09000 * 109.47165 * 29.99977 * 4 3 2 32 32 H 1.08993 * 109.47284 * 149.99993 * 4 3 2 33 33 H 0.97004 * 120.00423 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00135 * 4.65287 * 15 13 3 35 35 H 1.08002 * 120.78567 * 0.02562 * 17 16 15 36 36 H 1.07992 * 120.41041 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46556 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.63028 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1492 2.3894 -2.8780 8 7 3.3489 3.1247 -3.6187 9 14 5.9136 2.0964 -3.4169 10 1 6.6015 1.2422 -2.4157 11 1 5.9215 1.4167 -4.7372 12 1 6.6205 3.3978 -3.5259 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1628 1.1671 15 7 2.0179 1.3815 2.3344 16 6 2.1577 2.0719 3.5464 17 6 3.1381 3.0517 3.6914 18 6 3.2399 3.7068 4.9055 19 6 2.3675 3.3693 5.9323 20 8 2.4600 4.0065 7.1276 21 6 1.5355 3.6151 8.1446 22 9 0.2288 3.8403 7.6986 23 9 1.7034 2.2558 8.4294 24 7 1.4489 2.4344 5.7599 25 6 1.3224 1.7887 4.6161 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 3.6750 3.5151 -4.4446 34 1 1.7592 0.4466 2.3358 35 1 3.8027 3.2937 2.8752 36 1 3.9878 4.4718 5.0528 37 1 1.7176 4.2007 9.0458 38 1 0.5597 1.0312 4.5120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283133062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:42 Heat of formation + Delta-G solvation = -149.907119 kcal Electronic energy + Delta-G solvation = -26080.610883 eV Core-core repulsion = 21786.732307 eV Total energy + Delta-G solvation = -4293.878575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.95867 -48.09921 -42.08642 -40.98056 -38.94079 -37.11542 -35.97766 -34.77272 -33.34488 -31.63606 -30.82910 -28.79606 -27.17827 -25.24000 -24.77244 -24.42848 -23.52259 -21.07788 -20.18021 -19.59019 -19.03563 -18.76042 -18.58550 -18.24899 -17.40718 -16.86363 -16.72828 -16.27970 -16.04506 -15.81303 -15.41084 -15.21027 -14.84695 -14.65261 -14.55876 -14.43602 -14.31613 -14.05500 -13.78103 -13.71651 -13.55641 -13.27221 -13.06199 -13.02753 -12.70753 -12.51638 -12.19579 -11.95842 -11.81346 -11.65490 -11.23838 -10.90541 -10.63185 -10.53829 -9.59129 -9.04180 -8.20432 -6.35038 -0.04599 0.12371 1.37846 1.40127 1.47300 1.52055 1.70339 2.11169 2.39590 2.67711 2.68530 2.94263 3.09694 3.20285 3.71710 3.77378 3.84832 3.90617 4.00882 4.09274 4.37952 4.46103 4.54730 4.60086 4.85205 4.97304 4.98996 5.05180 5.11924 5.22914 5.38376 5.46868 5.57554 5.77516 5.87820 6.03214 6.07532 6.61041 6.74326 7.01760 7.31873 7.59174 8.86198 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002971 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.567096 B = 9421.334698 C =10174.687247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.610 5.610 4 C 0.278 3.722 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.696 3.304 14 O -0.619 6.619 15 N -0.666 5.666 16 C 0.093 3.907 17 C -0.063 4.063 18 C -0.152 4.152 19 C 0.269 3.731 20 O -0.321 6.321 21 C 0.416 3.584 22 F -0.210 7.210 23 F -0.208 7.208 24 N -0.516 5.516 25 C 0.120 3.880 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.027 0.973 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.423 0.577 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.235 0.765 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -5.690 21.923 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.209 1.209 13 C 0.397 3.603 14 O -0.499 6.499 15 N -0.319 5.319 16 C -0.005 4.005 17 C -0.091 4.091 18 C -0.173 4.173 19 C 0.091 3.909 20 O -0.233 6.233 21 C 0.327 3.673 22 F -0.192 7.192 23 F -0.190 7.190 24 N -0.238 5.238 25 C -0.039 4.039 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.251 0.749 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.056 -4.858 22.421 23.492 hybrid contribution 1.020 -0.139 -1.537 1.850 sum -4.036 -4.996 20.884 21.850 Atomic orbital electron populations 1.22176 0.94440 1.03662 1.01780 1.21739 0.95375 0.81234 1.03985 1.47481 1.67046 1.15219 1.04634 1.18663 0.95286 0.91404 0.78971 1.21748 0.97915 1.31831 1.06387 0.92794 1.25814 1.02178 0.94547 0.96480 1.70054 1.37614 1.34309 1.14820 0.85389 0.79252 0.77920 0.78345 1.19157 1.19583 1.20917 1.16079 0.78831 0.84266 0.81083 1.90853 1.53534 1.19151 1.86371 1.42432 1.73040 1.14706 1.01707 1.18612 0.96864 0.97829 0.87201 1.21691 0.96078 0.94663 0.96667 1.21143 1.01861 1.03717 0.90554 1.19699 0.93298 0.91542 0.86349 1.86790 1.56526 1.60096 1.19886 1.24131 0.73138 0.79473 0.90582 1.93069 1.40726 1.94297 1.91138 1.93066 1.94751 1.37821 1.93351 1.67352 1.21260 1.09149 1.25991 1.22509 0.96569 0.98999 0.85866 0.92396 0.94113 0.88329 0.90186 0.88699 0.95465 0.98275 0.92449 0.73641 0.84346 0.81879 0.74948 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.76 5.93 86.38 0.51 3.28 16 3 N -0.61 -24.76 2.46 -844.20 -2.07 -26.84 16 4 C 0.28 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -30.38 9.39 25.60 0.24 -30.14 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 9 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.70 28.33 8.14 179.06 1.46 29.79 16 14 O -0.62 -31.23 13.40 -4.00 -0.05 -31.28 16 15 N -0.67 -19.32 5.24 -316.78 -1.66 -20.97 16 16 C 0.09 2.68 6.32 38.17 0.24 2.92 16 17 C -0.06 -2.00 8.80 22.56 0.20 -1.80 16 18 C -0.15 -4.09 10.04 22.45 0.23 -3.87 16 19 C 0.27 7.15 7.19 84.80 0.61 7.76 16 20 O -0.32 -6.90 10.41 -90.89 -0.95 -7.85 16 21 C 0.42 6.69 6.06 113.37 0.69 7.37 16 22 F -0.21 -4.55 16.57 44.97 0.75 -3.81 16 23 F -0.21 -4.27 16.57 44.97 0.75 -3.52 16 24 N -0.52 -13.83 8.06 -308.44 -2.49 -16.31 16 25 C 0.12 2.89 11.11 84.77 0.94 3.83 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.09 1.93 6.30 -2.38 -0.02 1.92 16 31 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 32 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.42 8.76 6.52 -92.71 -0.60 8.15 16 35 H 0.14 5.18 6.32 -2.91 -0.02 5.16 16 36 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.23 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.20 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -77.96 338.18 3.85 -74.11 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.51 Total: 13.03 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 6.75 Total: 32.19 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -5.93 Total: -119.21 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.00 Total: -39.13 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.49 Total: -7.33 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -77.96 3.85 -74.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283133062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.795 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds