Wall clock time and date at job start Tue Mar 31 2020 10:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47509 * 2 1 4 4 H 1.09003 * 109.47025 * 306.50119 * 3 2 1 5 5 C 1.53001 * 109.47296 * 66.49652 * 3 2 1 6 6 C 1.50694 * 109.47296 * 186.29677 * 5 3 2 7 7 C 1.38242 * 119.99703 * 86.48056 * 6 5 3 8 8 C 1.38237 * 119.99662 * 179.97438 * 7 6 5 9 9 C 1.38236 * 120.00006 * 0.27375 * 8 7 6 10 10 C 1.50701 * 119.99634 * 179.72676 * 9 8 7 11 11 F 1.39899 * 109.47130 * 90.00053 * 10 9 8 12 12 F 1.39906 * 109.46990 * 209.99897 * 10 9 8 13 13 F 1.39899 * 109.47567 * 329.99921 * 10 9 8 14 14 C 1.38236 * 120.00354 * 359.53469 * 9 8 7 15 15 C 1.38235 * 119.99452 * 0.40144 * 14 9 8 16 16 C 1.50701 * 109.47490 * 186.49704 * 3 2 1 17 17 O 1.21290 * 119.99968 * 278.03362 * 16 3 2 18 18 N 1.34772 * 119.99679 * 98.02862 * 16 3 2 19 19 C 1.37098 * 120.00053 * 180.02562 * 18 16 3 20 20 H 1.08007 * 119.99633 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00639 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99302 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00283 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47245 * 59.99821 * 23 21 19 25 25 H 1.48503 * 109.47287 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46925 * 299.99872 * 23 21 19 27 27 H 1.08999 * 109.46586 * 53.94017 * 1 2 3 28 28 H 1.08993 * 109.47172 * 173.93726 * 1 2 3 29 29 H 1.09001 * 109.46958 * 293.94109 * 1 2 3 30 30 H 1.09002 * 109.46827 * 239.99503 * 2 1 3 31 31 H 1.09003 * 109.46905 * 119.99998 * 2 1 3 32 32 H 1.08997 * 109.46940 * 66.29432 * 5 3 2 33 33 H 1.09002 * 109.47110 * 306.30372 * 5 3 2 34 34 H 1.07993 * 120.00206 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.99943 * 179.97438 * 8 7 6 36 36 H 1.07990 * 120.00381 * 180.23238 * 14 9 8 37 37 H 1.08001 * 119.99789 * 179.83510 * 15 14 9 38 38 H 0.97003 * 120.00585 * 0.02562 * 18 16 3 39 39 H 0.97006 * 119.99690 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5849 1.9888 -0.8261 5 6 1.6678 2.1151 1.3228 6 6 2.0317 3.5762 1.2633 7 6 1.1394 4.4897 0.7339 8 6 1.4730 5.8301 0.6798 9 6 2.7012 6.2562 1.1498 10 6 3.0673 7.7166 1.0851 11 9 2.6586 8.3524 2.2624 12 9 4.4533 7.8441 0.9433 13 9 2.4299 8.3092 -0.0102 14 6 3.5920 5.3433 1.6828 15 6 3.2578 4.0031 1.7381 16 6 3.5385 1.4454 -0.1608 17 8 4.2522 1.2607 0.8024 18 7 4.0855 1.6533 -1.3748 19 6 5.4487 1.6556 -1.5213 20 1 6.0842 1.4912 -0.6635 21 6 6.0127 1.8704 -2.7728 22 7 5.2394 2.0709 -3.8163 23 14 7.8700 1.8741 -2.9721 24 1 8.4154 0.5578 -2.5540 25 1 8.2148 2.1241 -4.3948 26 1 8.4564 2.9443 -2.1258 27 1 -0.3632 0.6049 -0.8308 28 1 -0.3633 -1.0218 -0.1085 29 1 -0.3633 0.4170 0.9393 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2113 1.6382 2.1385 33 1 0.5959 2.0142 1.4927 34 1 0.1816 4.1562 0.3627 35 1 0.7760 6.5438 0.2659 36 1 4.5499 5.6767 2.0534 37 1 3.9548 3.2894 2.1521 38 1 3.5148 1.8013 -2.1451 39 1 5.6332 2.2205 -4.6901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284040214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:00 Heat of formation + Delta-G solvation = -188.089753 kcal Electronic energy + Delta-G solvation = -26510.073438 eV Core-core repulsion = 22194.619178 eV Total energy + Delta-G solvation = -4315.454260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.08284 -47.59034 -47.55677 -39.68162 -38.30412 -35.27697 -33.84583 -32.54793 -31.17446 -30.91825 -28.95571 -26.52113 -24.85179 -23.77127 -22.77564 -21.36940 -20.94000 -18.82567 -18.42840 -18.33042 -18.27204 -17.76584 -16.27283 -15.76350 -15.05766 -14.67426 -14.55615 -14.41779 -14.25805 -14.21923 -14.00917 -13.94371 -13.82191 -13.79415 -13.70962 -13.29043 -13.08253 -12.73864 -12.51898 -12.21632 -12.07181 -11.64858 -11.44926 -11.33340 -11.18243 -11.07505 -10.77557 -10.50454 -10.45214 -10.42303 -10.21874 -9.49624 -8.88166 -8.76523 -8.32179 -7.97575 -6.42756 -3.83499 1.08277 1.46505 2.75636 3.18615 3.25082 3.28952 3.63604 3.82045 3.87661 4.12494 4.16147 4.51759 4.80133 4.88055 4.98469 4.99696 5.17551 5.24342 5.42003 5.45108 5.50916 5.57330 5.67983 5.72561 5.80246 5.95380 6.04195 6.11054 6.13473 6.24427 6.30660 6.39500 6.44193 6.48054 6.56547 6.79336 6.99163 7.53622 8.04199 8.59075 9.16231 9.54000 10.04478 10.74641 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.005155 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.871033 B = 5430.816547 C = 7514.380976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.093 4.093 4 H 0.076 0.924 5 C -0.069 4.069 6 C -0.042 4.042 7 C -0.122 4.122 8 C -0.076 4.076 9 C -0.193 4.193 10 C 0.509 3.491 11 F -0.182 7.182 12 F -0.177 7.177 13 F -0.180 7.180 14 C -0.069 4.069 15 C -0.095 4.095 16 C 0.446 3.554 17 O -0.597 6.597 18 N -0.557 5.557 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.024 3.976 22 N -0.899 5.899 23 Si 0.928 3.072 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.392 0.608 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 5.606 7.789 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.094 0.906 5 C -0.106 4.106 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.094 4.094 9 C -0.195 4.195 10 C 0.455 3.545 11 F -0.163 7.163 12 F -0.158 7.158 13 F -0.161 7.161 14 C -0.088 4.088 15 C -0.113 4.113 16 C 0.232 3.768 17 O -0.483 6.483 18 N -0.191 5.191 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.540 5.540 23 Si 0.755 3.245 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.225 0.775 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.151 5.568 8.197 14.186 hybrid contribution 0.763 0.471 -0.895 1.267 sum -9.388 6.039 7.302 13.339 Atomic orbital electron populations 1.21840 0.95913 1.01416 1.01652 1.21415 0.95245 0.95216 1.02964 1.21185 0.95634 0.96949 0.97687 0.90561 1.20623 1.01232 0.90253 0.98523 1.20194 0.93617 0.96064 0.94351 1.20992 1.00199 0.92132 1.00676 1.20789 0.94618 0.96701 0.97279 1.19874 0.98847 0.90827 1.09919 1.18371 0.74484 0.88165 0.73465 1.93197 1.90321 1.84339 1.48463 1.93197 1.30517 1.96654 1.95471 1.93172 1.81944 1.86045 1.54944 1.20941 0.98253 0.93172 0.96388 1.21342 0.96382 0.94909 0.98676 1.19745 0.88746 0.84209 0.84110 1.90470 1.62788 1.55901 1.39106 1.41938 1.07714 1.61525 1.07946 1.19638 0.82023 1.46105 0.95262 0.88027 1.25252 1.00364 0.97129 0.95021 1.69604 1.35869 1.48559 1.00002 0.85965 0.82411 0.78995 0.77161 1.19894 1.20939 1.19882 0.92691 0.92883 0.92678 0.91491 0.91323 0.89415 0.90495 0.85156 0.85212 0.85080 0.83771 0.77508 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.56 37.16 0.36 -1.28 16 2 C -0.11 -1.58 5.37 -26.73 -0.14 -1.73 16 3 C -0.09 -1.52 2.16 -91.77 -0.20 -1.71 16 4 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 5 C -0.07 -0.98 4.54 -27.89 -0.13 -1.10 16 6 C -0.04 -0.64 4.80 -104.62 -0.50 -1.14 16 7 C -0.12 -1.61 9.72 -39.58 -0.38 -1.99 16 8 C -0.08 -1.01 9.40 -39.58 -0.37 -1.38 16 9 C -0.19 -2.84 5.45 -104.62 -0.57 -3.41 16 10 C 0.51 7.17 3.36 36.01 0.12 7.29 16 11 F -0.18 -2.45 17.30 2.25 0.04 -2.41 16 12 F -0.18 -2.66 16.47 2.25 0.04 -2.62 16 13 F -0.18 -2.52 16.46 2.25 0.04 -2.48 16 14 C -0.07 -1.08 9.40 -39.58 -0.37 -1.45 16 15 C -0.10 -1.58 8.85 -39.58 -0.35 -1.93 16 16 C 0.45 9.88 5.86 -10.99 -0.06 9.81 16 17 O -0.60 -14.87 14.48 5.55 0.08 -14.79 16 18 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.53 6.77 -51.93 -0.35 0.18 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 33 H 0.08 0.86 6.45 -51.93 -0.34 0.52 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.44 7.60 -52.49 -0.40 1.04 16 36 H 0.13 1.87 7.61 -52.49 -0.40 1.47 16 37 H 0.14 2.58 7.08 -52.49 -0.37 2.21 16 38 H 0.39 9.49 7.85 -40.82 -0.32 9.17 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -29.54 342.64 -6.46 -36.01 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.61 Total: 10.48 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.85 Total: -7.85 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.67 Total: -37.53 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.54 -6.46 -36.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284040214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.085 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds