Wall clock time and date at job start Tue Mar 31 2020 10:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47509 * 2 1 4 4 H 1.09003 * 109.47025 * 306.50119 * 3 2 1 5 5 C 1.53001 * 109.47296 * 66.49652 * 3 2 1 6 6 C 1.50694 * 109.47296 * 186.29677 * 5 3 2 7 7 C 1.38242 * 119.99703 * 86.48056 * 6 5 3 8 8 C 1.38237 * 119.99662 * 179.97438 * 7 6 5 9 9 C 1.38236 * 120.00006 * 0.27375 * 8 7 6 10 10 C 1.50701 * 119.99634 * 179.72676 * 9 8 7 11 11 F 1.39899 * 109.47130 * 90.00053 * 10 9 8 12 12 F 1.39906 * 109.46990 * 209.99897 * 10 9 8 13 13 F 1.39899 * 109.47567 * 329.99921 * 10 9 8 14 14 C 1.38236 * 120.00354 * 359.53469 * 9 8 7 15 15 C 1.38235 * 119.99452 * 0.40144 * 14 9 8 16 16 C 1.50701 * 109.47490 * 186.49704 * 3 2 1 17 17 O 1.21290 * 119.99968 * 278.03362 * 16 3 2 18 18 N 1.34772 * 119.99679 * 98.02862 * 16 3 2 19 19 C 1.37098 * 120.00053 * 180.02562 * 18 16 3 20 20 H 1.08007 * 119.99633 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00639 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99302 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00283 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47245 * 59.99821 * 23 21 19 25 25 H 1.48503 * 109.47287 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46925 * 299.99872 * 23 21 19 27 27 H 1.08999 * 109.46586 * 53.94017 * 1 2 3 28 28 H 1.08993 * 109.47172 * 173.93726 * 1 2 3 29 29 H 1.09001 * 109.46958 * 293.94109 * 1 2 3 30 30 H 1.09002 * 109.46827 * 239.99503 * 2 1 3 31 31 H 1.09003 * 109.46905 * 119.99998 * 2 1 3 32 32 H 1.08997 * 109.46940 * 66.29432 * 5 3 2 33 33 H 1.09002 * 109.47110 * 306.30372 * 5 3 2 34 34 H 1.07993 * 120.00206 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.99943 * 179.97438 * 8 7 6 36 36 H 1.07990 * 120.00381 * 180.23238 * 14 9 8 37 37 H 1.08001 * 119.99789 * 179.83510 * 15 14 9 38 38 H 0.97003 * 120.00585 * 0.02562 * 18 16 3 39 39 H 0.97006 * 119.99690 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5849 1.9888 -0.8261 5 6 1.6678 2.1151 1.3228 6 6 2.0317 3.5762 1.2633 7 6 1.1394 4.4897 0.7339 8 6 1.4730 5.8301 0.6798 9 6 2.7012 6.2562 1.1498 10 6 3.0673 7.7166 1.0851 11 9 2.6586 8.3524 2.2624 12 9 4.4533 7.8441 0.9433 13 9 2.4299 8.3092 -0.0102 14 6 3.5920 5.3433 1.6828 15 6 3.2578 4.0031 1.7381 16 6 3.5385 1.4454 -0.1608 17 8 4.2522 1.2607 0.8024 18 7 4.0855 1.6533 -1.3748 19 6 5.4487 1.6556 -1.5213 20 1 6.0842 1.4912 -0.6635 21 6 6.0127 1.8704 -2.7728 22 7 5.2394 2.0709 -3.8163 23 14 7.8700 1.8741 -2.9721 24 1 8.4154 0.5578 -2.5540 25 1 8.2148 2.1241 -4.3948 26 1 8.4564 2.9443 -2.1258 27 1 -0.3632 0.6049 -0.8308 28 1 -0.3633 -1.0218 -0.1085 29 1 -0.3633 0.4170 0.9393 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2113 1.6382 2.1385 33 1 0.5959 2.0142 1.4927 34 1 0.1816 4.1562 0.3627 35 1 0.7760 6.5438 0.2659 36 1 4.5499 5.6767 2.0534 37 1 3.9548 3.2894 2.1521 38 1 3.5148 1.8013 -2.1451 39 1 5.6332 2.2205 -4.6901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284040214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:59 Heat of formation + Delta-G solvation = -203.784067 kcal Electronic energy + Delta-G solvation = -26510.753995 eV Core-core repulsion = 22194.619178 eV Total energy + Delta-G solvation = -4316.134817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.21441 -48.73529 -48.67489 -41.00285 -39.85076 -36.70109 -35.75829 -33.68847 -33.13628 -32.04695 -30.09298 -27.94827 -26.49752 -25.00634 -23.90653 -22.61113 -22.23687 -20.51198 -19.69143 -19.54848 -19.44833 -19.40439 -17.92739 -16.94544 -16.59065 -16.16252 -15.87783 -15.77954 -15.55476 -15.44921 -15.40744 -15.14437 -14.97998 -14.92844 -14.84323 -14.72980 -14.42968 -14.13957 -13.75128 -13.57275 -13.27985 -13.12622 -12.94995 -12.67248 -12.49028 -12.42751 -12.29612 -12.15038 -11.94391 -11.66452 -11.58912 -11.40839 -10.18332 -10.01210 -9.97721 -9.90497 -8.45684 -5.93261 -0.06789 0.33081 1.36977 1.38779 1.48869 1.62356 2.10185 2.28621 2.48726 2.69395 2.99489 3.22204 3.25160 3.39576 3.74423 3.84484 3.91602 4.03543 4.19036 4.30353 4.38172 4.39131 4.59972 4.62372 4.68437 4.73711 4.86847 4.98451 5.03596 5.13796 5.19508 5.24944 5.26018 5.36448 5.41821 5.52542 5.64304 5.85556 6.02157 6.61180 7.14629 7.60901 8.15776 8.71539 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.005155 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.871033 B = 5430.816547 C = 7514.380976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.083 4.083 4 H 0.091 0.909 5 C -0.062 4.062 6 C -0.054 4.054 7 C -0.113 4.113 8 C -0.073 4.073 9 C -0.203 4.203 10 C 0.514 3.486 11 F -0.177 7.177 12 F -0.186 7.186 13 F -0.177 7.177 14 C -0.084 4.084 15 C -0.120 4.120 16 C 0.448 3.552 17 O -0.628 6.628 18 N -0.573 5.573 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.985 3.015 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.275 1.275 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.393 0.607 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 6.007 7.348 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.105 4.105 4 H 0.110 0.890 5 C -0.099 4.099 6 C -0.054 4.054 7 C -0.130 4.130 8 C -0.091 4.091 9 C -0.204 4.204 10 C 0.460 3.540 11 F -0.159 7.159 12 F -0.167 7.167 13 F -0.158 7.158 14 C -0.102 4.102 15 C -0.138 4.138 16 C 0.236 3.764 17 O -0.515 6.515 18 N -0.208 5.208 19 C -0.458 4.458 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.200 1.200 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.226 0.774 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.596 5.965 7.764 15.954 hybrid contribution 1.489 0.348 -0.674 1.672 sum -11.107 6.313 7.090 14.611 Atomic orbital electron populations 1.21794 0.92295 1.02749 1.03156 1.21410 0.98273 0.93196 1.01746 1.21210 0.90702 0.99015 0.99579 0.89043 1.20637 1.03603 0.89293 0.96393 1.20379 0.93373 0.96994 0.94664 1.21390 1.01054 0.91500 0.99091 1.21204 0.94259 0.97562 0.96102 1.20018 0.99436 0.90856 1.10084 1.18270 0.74098 0.88005 0.73627 1.93205 1.90212 1.84233 1.48221 1.93181 1.31299 1.96682 1.95533 1.93175 1.81814 1.85974 1.54833 1.20986 0.98826 0.93212 0.97209 1.21251 0.97222 0.94935 1.00439 1.20888 0.91439 0.81363 0.82674 1.90453 1.64622 1.56432 1.39995 1.42027 1.06919 1.62986 1.08895 1.19582 0.83415 1.47782 0.95050 0.90422 1.25953 1.04308 0.96507 0.94450 1.69665 1.37266 1.48966 1.00255 0.85111 0.77611 0.78864 0.77546 1.19565 1.19566 1.20028 0.91615 0.91692 0.90746 0.93204 0.92236 0.91165 0.86060 0.81231 0.82395 0.85163 0.86543 0.77380 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.56 71.98 0.69 -1.85 16 2 C -0.11 -2.92 5.37 30.59 0.16 -2.76 16 3 C -0.08 -2.62 2.16 -11.54 -0.02 -2.64 16 4 H 0.09 2.62 8.06 -2.39 -0.02 2.60 16 5 C -0.06 -1.64 4.54 29.85 0.14 -1.50 16 6 C -0.05 -1.55 4.80 -19.87 -0.10 -1.65 16 7 C -0.11 -2.59 9.72 22.27 0.22 -2.37 16 8 C -0.07 -1.75 9.40 22.27 0.21 -1.54 16 9 C -0.20 -5.75 5.45 -19.87 -0.11 -5.86 16 10 C 0.51 13.94 3.36 71.24 0.24 14.18 16 11 F -0.18 -4.57 17.30 44.97 0.78 -3.79 16 12 F -0.19 -5.55 16.47 44.97 0.74 -4.81 16 13 F -0.18 -4.62 16.46 44.97 0.74 -3.88 16 14 C -0.08 -2.68 9.40 22.27 0.21 -2.47 16 15 C -0.12 -4.11 8.85 22.27 0.20 -3.91 16 16 C 0.45 20.27 5.86 87.66 0.51 20.78 16 17 O -0.63 -32.63 14.48 -3.06 -0.04 -32.67 16 18 N -0.57 -29.08 5.29 -306.99 -1.62 -30.70 16 19 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 23 Si 0.98 43.61 29.55 68.60 2.03 45.64 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.06 6.77 -2.39 -0.02 1.04 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.13 7.57 -2.39 -0.02 2.11 16 33 H 0.12 2.15 6.45 -2.39 -0.02 2.13 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.16 2.86 7.60 -2.91 -0.02 2.84 16 36 H 0.13 3.96 7.61 -2.92 -0.02 3.94 16 37 H 0.12 4.53 7.08 -2.91 -0.02 4.51 16 38 H 0.39 19.35 7.85 -92.71 -0.73 18.63 16 39 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -66.14 342.64 6.89 -59.24 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.37 Total: 30.49 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.63 Total: -9.59 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.34 Total: -80.63 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.04 Total: -32.67 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 2.26 Total: -12.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.14 6.89 -59.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284040214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.541 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds