Wall clock time and date at job start Tue Mar 31 2020 11:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46792 * 2 1 4 4 C 1.52994 * 109.47038 * 120.00217 * 2 1 3 5 5 C 1.50696 * 109.47353 * 184.99797 * 4 2 1 6 6 C 1.38257 * 120.00351 * 265.23271 * 5 4 2 7 7 C 1.38210 * 119.99952 * 180.25100 * 6 5 4 8 8 C 1.38261 * 120.00253 * 359.79082 * 7 6 5 9 9 C 1.38213 * 119.99740 * 359.95094 * 8 7 6 10 10 C 1.38217 * 119.99893 * 84.99626 * 5 4 2 11 11 C 1.50703 * 119.99908 * 0.02562 * 10 5 4 12 12 F 1.39905 * 109.47157 * 179.72409 * 11 10 5 13 13 F 1.39900 * 109.47159 * 59.72710 * 11 10 5 14 14 F 1.39897 * 109.47274 * 299.72401 * 11 10 5 15 15 N 1.46507 * 109.46940 * 239.99958 * 2 1 3 16 16 C 1.46499 * 119.99896 * 300.00293 * 15 2 1 17 17 C 1.34777 * 119.99931 * 120.00214 * 15 2 1 18 18 O 1.21693 * 119.99674 * 0.02562 * 17 15 2 19 19 C 1.46368 * 120.00261 * 179.97438 * 17 15 2 20 20 H 1.08000 * 119.99665 * 0.02562 * 19 17 15 21 21 C 1.40045 * 120.00283 * 179.97438 * 19 17 15 22 22 N 1.30670 * 119.99797 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00140 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46976 * 60.00518 * 23 21 19 25 25 H 1.48501 * 109.46971 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46892 * 300.00296 * 23 21 19 27 27 H 1.08994 * 109.47266 * 300.00349 * 1 2 3 28 28 H 1.09007 * 109.46827 * 59.99588 * 1 2 3 29 29 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47207 * 64.99559 * 4 2 1 31 31 H 1.09003 * 109.47268 * 304.99739 * 4 2 1 32 32 H 1.07995 * 119.99640 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.99867 * 179.76402 * 7 6 5 34 34 H 1.07998 * 119.99867 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.99740 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.47232 * 89.99973 * 16 15 2 37 37 H 1.09003 * 109.46740 * 209.99804 * 16 15 2 38 38 H 1.09001 * 109.47186 * 329.99936 * 16 15 2 39 39 H 0.97010 * 120.00016 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 6 4.3290 -1.6305 0.8022 7 6 5.7064 -1.5354 0.8652 8 6 6.2972 -0.4227 1.4348 9 6 5.5104 0.5949 1.9403 10 6 4.1325 0.4999 1.8769 11 6 3.2746 1.6091 2.4291 12 9 4.0935 2.6176 2.9484 13 9 2.4561 1.1038 3.4450 14 9 2.4779 2.1355 1.4068 15 7 2.0184 -0.6907 -1.1962 16 6 1.6643 -2.0932 -1.4281 17 6 2.7932 -0.0357 -2.0834 18 8 3.0876 1.1292 -1.8905 19 6 3.2816 -0.7258 -3.2782 20 1 3.0206 -1.7597 -3.4491 21 6 4.0863 -0.0450 -4.2003 22 7 4.4016 1.2061 -3.9938 23 14 4.7089 -0.9256 -5.7256 24 1 3.5539 -1.3926 -6.5337 25 1 5.5340 0.0078 -6.5339 26 1 5.5344 -2.0921 -5.3214 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -1.7715 1.2055 31 1 1.6054 -0.2618 2.1369 32 1 3.8675 -2.4998 0.3575 33 1 6.3212 -2.3304 0.4698 34 1 7.3735 -0.3486 1.4843 35 1 5.9718 1.4639 2.3856 36 1 0.7375 -2.1444 -1.9993 37 1 2.4628 -2.5819 -1.9865 38 1 1.5294 -2.5969 -0.4709 39 1 4.9593 1.6776 -4.6323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288523491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:31 Heat of formation + Delta-G solvation = -158.128959 kcal Electronic energy + Delta-G solvation = -28274.485390 eV Core-core repulsion = 23960.330327 eV Total energy + Delta-G solvation = -4314.155063 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.92195 -47.45116 -47.30825 -39.43504 -37.77296 -34.98839 -32.48474 -32.35173 -31.44787 -30.41712 -26.66551 -26.12843 -25.62925 -25.27091 -22.14791 -21.73646 -20.74438 -18.62368 -18.16979 -18.12054 -17.95541 -16.53812 -15.74780 -15.71204 -15.02906 -14.63812 -14.57350 -14.34459 -14.14268 -14.03780 -13.87429 -13.72384 -13.59746 -13.45485 -13.07440 -12.79766 -12.44339 -12.40364 -12.23279 -11.89182 -11.78456 -11.52401 -11.38871 -11.32381 -11.00742 -10.90431 -10.78035 -10.56186 -10.27738 -10.10475 -9.99194 -8.87765 -8.82411 -8.49336 -7.50266 -7.14280 -6.15262 -4.60718 1.28132 1.59808 2.97659 3.14540 3.20177 3.21293 3.80236 4.03294 4.09495 4.33693 4.57916 4.60850 4.75573 4.96459 5.05376 5.19219 5.47107 5.50823 5.62981 5.69106 5.77464 5.84849 5.94857 5.98416 6.01974 6.13289 6.15737 6.25689 6.41754 6.45298 6.54409 6.61988 6.68372 6.73821 6.86558 7.09913 7.46639 7.71256 8.18247 8.40655 9.05590 9.49698 10.62753 10.82784 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.005685 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.364466 B = 4924.042685 C = 5397.154114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.116 0.884 4 C -0.113 4.113 5 C -0.008 4.008 6 C -0.102 4.102 7 C -0.083 4.083 8 C -0.131 4.131 9 C -0.073 4.073 10 C -0.181 4.181 11 C 0.508 3.492 12 F -0.183 7.183 13 F -0.182 7.182 14 F -0.160 7.160 15 N -0.638 5.638 16 C 0.100 3.900 17 C 0.560 3.440 18 O -0.572 6.572 19 C -0.543 4.543 20 H 0.069 0.931 21 C 0.089 3.911 22 N -0.766 5.766 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.269 1.269 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 -5.686 11.991 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.133 0.867 4 C -0.152 4.152 5 C -0.008 4.008 6 C -0.120 4.120 7 C -0.101 4.101 8 C -0.149 4.149 9 C -0.091 4.091 10 C -0.183 4.183 11 C 0.454 3.546 12 F -0.164 7.164 13 F -0.164 7.164 14 F -0.142 7.142 15 N -0.376 5.376 16 C -0.045 4.045 17 C 0.366 3.634 18 O -0.454 6.454 19 C -0.580 4.580 20 H 0.087 0.913 21 C -0.131 4.131 22 N -0.394 5.394 23 Si 0.727 3.273 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.194 1.194 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.253 -4.824 12.035 12.968 hybrid contribution 0.127 -0.393 -0.861 0.955 sum -0.127 -5.217 11.174 12.333 Atomic orbital electron populations 1.22103 0.96521 1.01169 1.01490 1.21026 0.92632 0.99729 0.84070 0.86653 1.21390 0.90622 1.02894 1.00257 1.19479 0.96209 0.92060 0.93067 1.20946 0.93399 0.98998 0.98663 1.21293 0.95005 0.97695 0.96124 1.21001 0.99769 0.94098 1.00007 1.20850 0.91685 0.98864 0.97703 1.19720 0.94424 0.95692 1.08416 1.18373 0.78727 0.81937 0.75587 1.93127 1.72584 1.63219 1.87482 1.93130 1.74380 1.87115 1.61730 1.93200 1.74899 1.87587 1.58471 1.47963 1.55510 1.11028 1.23121 1.21367 0.99892 0.84411 0.98822 1.18178 0.76926 0.86004 0.82297 1.90605 1.60436 1.17356 1.76988 1.20938 1.33030 0.98525 1.05532 0.91273 1.25698 0.94662 0.94393 0.98337 1.70017 1.27274 1.09049 1.33102 0.86533 0.79230 0.79795 0.81774 1.19343 1.20629 1.19383 0.92890 0.92301 0.93174 0.90356 0.90234 0.85354 0.85576 0.85495 0.85124 0.95213 0.91200 0.94197 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.19 37.16 0.34 -2.20 16 2 C 0.13 2.54 2.35 -67.93 -0.16 2.38 16 3 H 0.12 2.66 3.90 -51.93 -0.20 2.46 16 4 C -0.11 -1.84 4.12 -27.89 -0.11 -1.96 16 5 C -0.01 -0.14 4.86 -104.62 -0.51 -0.65 16 6 C -0.10 -1.68 9.53 -39.58 -0.38 -2.06 16 7 C -0.08 -1.26 10.05 -39.58 -0.40 -1.66 16 8 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 9 C -0.07 -1.16 9.43 -39.58 -0.37 -1.53 16 10 C -0.18 -3.17 5.37 -104.62 -0.56 -3.73 16 11 C 0.51 8.63 2.83 36.01 0.10 8.73 16 12 F -0.18 -2.95 15.97 2.25 0.04 -2.91 16 13 F -0.18 -2.79 15.31 2.25 0.03 -2.76 16 14 F -0.16 -3.12 13.65 2.25 0.03 -3.09 16 15 N -0.64 -13.96 2.34 -175.60 -0.41 -14.37 16 16 C 0.10 1.77 9.05 59.85 0.54 2.31 16 17 C 0.56 15.52 7.61 -12.99 -0.10 15.42 16 18 O -0.57 -18.20 14.35 5.19 0.07 -18.13 16 19 C -0.54 -14.95 8.74 -35.64 -0.31 -15.27 16 20 H 0.07 1.74 6.00 -52.49 -0.31 1.42 16 21 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 22 N -0.77 -22.80 11.83 55.55 0.66 -22.15 16 23 Si 0.90 19.97 29.56 -169.99 -5.02 14.94 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.05 0.73 7.67 -51.93 -0.40 0.33 16 30 H 0.08 1.12 6.39 -51.93 -0.33 0.78 16 31 H 0.08 1.20 5.74 -51.93 -0.30 0.90 16 32 H 0.13 1.94 7.90 -52.49 -0.41 1.52 16 33 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.82 7.16 -52.49 -0.38 1.44 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.28 6.09 -51.93 -0.32 0.96 16 38 H 0.04 0.58 6.34 -51.93 -0.33 0.25 16 39 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -33.60 329.02 -6.28 -39.88 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.23 Total: 3.80 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.41 Total: -0.18 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.25 Total: -36.52 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.07 Total: -18.13 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.10 Total: -8.76 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.60 -6.28 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288523491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.247 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds