Wall clock time and date at job start Tue Mar 31 2020 11:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46792 * 2 1 4 4 C 1.52994 * 109.47038 * 120.00217 * 2 1 3 5 5 C 1.50696 * 109.47353 * 184.99797 * 4 2 1 6 6 C 1.38257 * 120.00351 * 265.23271 * 5 4 2 7 7 C 1.38210 * 119.99952 * 180.25100 * 6 5 4 8 8 C 1.38261 * 120.00253 * 359.79082 * 7 6 5 9 9 C 1.38213 * 119.99740 * 359.95094 * 8 7 6 10 10 C 1.38217 * 119.99893 * 84.99626 * 5 4 2 11 11 C 1.50703 * 119.99908 * 0.02562 * 10 5 4 12 12 F 1.39905 * 109.47157 * 179.72409 * 11 10 5 13 13 F 1.39900 * 109.47159 * 59.72710 * 11 10 5 14 14 F 1.39897 * 109.47274 * 299.72401 * 11 10 5 15 15 N 1.46507 * 109.46940 * 239.99958 * 2 1 3 16 16 C 1.46499 * 119.99896 * 300.00293 * 15 2 1 17 17 C 1.34777 * 119.99931 * 120.00214 * 15 2 1 18 18 O 1.21693 * 119.99674 * 0.02562 * 17 15 2 19 19 C 1.46368 * 120.00261 * 179.97438 * 17 15 2 20 20 H 1.08000 * 119.99665 * 0.02562 * 19 17 15 21 21 C 1.40045 * 120.00283 * 179.97438 * 19 17 15 22 22 N 1.30670 * 119.99797 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00140 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46976 * 60.00518 * 23 21 19 25 25 H 1.48501 * 109.46971 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46892 * 300.00296 * 23 21 19 27 27 H 1.08994 * 109.47266 * 300.00349 * 1 2 3 28 28 H 1.09007 * 109.46827 * 59.99588 * 1 2 3 29 29 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47207 * 64.99559 * 4 2 1 31 31 H 1.09003 * 109.47268 * 304.99739 * 4 2 1 32 32 H 1.07995 * 119.99640 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.99867 * 179.76402 * 7 6 5 34 34 H 1.07998 * 119.99867 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.99740 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.47232 * 89.99973 * 16 15 2 37 37 H 1.09003 * 109.46740 * 209.99804 * 16 15 2 38 38 H 1.09001 * 109.47186 * 329.99936 * 16 15 2 39 39 H 0.97010 * 120.00016 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 6 4.3290 -1.6305 0.8022 7 6 5.7064 -1.5354 0.8652 8 6 6.2972 -0.4227 1.4348 9 6 5.5104 0.5949 1.9403 10 6 4.1325 0.4999 1.8769 11 6 3.2746 1.6091 2.4291 12 9 4.0935 2.6176 2.9484 13 9 2.4561 1.1038 3.4450 14 9 2.4779 2.1355 1.4068 15 7 2.0184 -0.6907 -1.1962 16 6 1.6643 -2.0932 -1.4281 17 6 2.7932 -0.0357 -2.0834 18 8 3.0876 1.1292 -1.8905 19 6 3.2816 -0.7258 -3.2782 20 1 3.0206 -1.7597 -3.4491 21 6 4.0863 -0.0450 -4.2003 22 7 4.4016 1.2061 -3.9938 23 14 4.7089 -0.9256 -5.7256 24 1 3.5539 -1.3926 -6.5337 25 1 5.5340 0.0078 -6.5339 26 1 5.5344 -2.0921 -5.3214 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -1.7715 1.2055 31 1 1.6054 -0.2618 2.1369 32 1 3.8675 -2.4998 0.3575 33 1 6.3212 -2.3304 0.4698 34 1 7.3735 -0.3486 1.4843 35 1 5.9718 1.4639 2.3856 36 1 0.7375 -2.1444 -1.9993 37 1 2.4628 -2.5819 -1.9865 38 1 1.5294 -2.5969 -0.4709 39 1 4.9593 1.6776 -4.6323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288523491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:30 Heat of formation + Delta-G solvation = -177.550355 kcal Electronic energy + Delta-G solvation = -28275.327565 eV Core-core repulsion = 23960.330327 eV Total energy + Delta-G solvation = -4314.997238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.26943 -48.77392 -48.69129 -40.74986 -39.47508 -36.77376 -34.52182 -33.86871 -32.72459 -31.81684 -28.16835 -27.93782 -27.19036 -26.55210 -23.50261 -23.15730 -22.26474 -20.26048 -19.54160 -19.47125 -19.23935 -18.38301 -17.68520 -16.96068 -16.59743 -16.10286 -15.93123 -15.72831 -15.67937 -15.44326 -15.31492 -15.09367 -15.04147 -14.82719 -14.48529 -14.16911 -14.14786 -13.68985 -13.49244 -13.45173 -13.38841 -13.04885 -12.91533 -12.78790 -12.68068 -12.58421 -12.12098 -12.02675 -11.98558 -11.84881 -11.45603 -10.86119 -10.10609 -9.75313 -9.62056 -8.90808 -8.19910 -6.74114 0.04124 0.37638 1.40328 1.43368 1.53883 1.65182 2.26373 2.55936 2.58386 2.72221 2.95403 3.02233 3.42277 3.69070 3.76975 3.85648 4.05984 4.15753 4.32248 4.40762 4.45508 4.53598 4.57612 4.67354 4.75209 4.85948 4.88736 4.95118 5.03272 5.11930 5.22701 5.28735 5.35586 5.42759 5.45265 5.50573 5.91312 5.92299 6.24290 6.56947 6.96626 7.57954 8.60292 8.79849 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.005685 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.364466 B = 4924.042685 C = 5397.154114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 H 0.076 0.924 4 C -0.103 4.103 5 C -0.030 4.030 6 C -0.117 4.117 7 C -0.090 4.090 8 C -0.133 4.133 9 C -0.088 4.088 10 C -0.205 4.205 11 C 0.509 3.491 12 F -0.180 7.180 13 F -0.172 7.172 14 F -0.179 7.179 15 N -0.635 5.635 16 C 0.096 3.904 17 C 0.549 3.451 18 O -0.627 6.627 19 C -0.566 4.566 20 H 0.090 0.910 21 C 0.032 3.968 22 N -0.822 5.822 23 Si 0.985 3.015 24 H -0.257 1.257 25 H -0.280 1.280 26 H -0.252 1.252 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -8.449 12.024 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.030 4.030 6 C -0.135 4.135 7 C -0.108 4.108 8 C -0.151 4.151 9 C -0.106 4.106 10 C -0.206 4.206 11 C 0.455 3.545 12 F -0.162 7.162 13 F -0.153 7.153 14 F -0.160 7.160 15 N -0.371 5.371 16 C -0.047 4.047 17 C 0.354 3.646 18 O -0.513 6.513 19 C -0.603 4.603 20 H 0.108 0.892 21 C -0.183 4.183 22 N -0.451 5.451 23 Si 0.806 3.194 24 H -0.181 1.181 25 H -0.205 1.205 26 H -0.176 1.176 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.162 0.838 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.164 -7.641 12.109 14.320 hybrid contribution 0.060 0.474 -0.781 0.915 sum -0.104 -7.167 11.329 13.406 Atomic orbital electron populations 1.22027 0.94197 1.02845 1.01417 1.21128 0.94424 0.98036 0.84539 0.90604 1.21298 0.90132 1.03918 0.98701 1.19721 0.96965 0.92527 0.93786 1.21232 0.94206 0.99275 0.98756 1.21715 0.95014 0.98524 0.95556 1.21429 1.01344 0.93439 0.98852 1.21182 0.91491 0.99898 0.98023 1.19962 0.95251 0.95963 1.09429 1.18400 0.78685 0.81998 0.75449 1.93121 1.72477 1.63191 1.87374 1.93137 1.74127 1.86928 1.61152 1.93179 1.75453 1.87909 1.59460 1.47742 1.54144 1.12452 1.22766 1.21554 0.99900 0.82099 1.01144 1.18468 0.77309 0.85536 0.83301 1.90564 1.62631 1.19737 1.78411 1.21452 1.33315 0.99581 1.05950 0.89234 1.26871 0.94401 0.94964 1.02066 1.70216 1.28644 1.11411 1.34878 0.85253 0.78884 0.78583 0.76715 1.18140 1.20513 1.17571 0.90835 0.94575 0.90495 0.87801 0.89231 0.84150 0.82864 0.82468 0.83839 0.94354 0.91763 0.90268 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.19 71.98 0.66 -3.97 16 2 C 0.12 4.76 2.35 44.99 0.11 4.87 16 3 H 0.08 3.63 3.90 -2.39 -0.01 3.62 16 4 C -0.10 -3.18 4.12 29.84 0.12 -3.05 16 5 C -0.03 -1.02 4.86 -19.87 -0.10 -1.11 16 6 C -0.12 -3.68 9.53 22.27 0.21 -3.47 16 7 C -0.09 -2.58 10.05 22.27 0.22 -2.35 16 8 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 9 C -0.09 -2.78 9.43 22.27 0.21 -2.57 16 10 C -0.20 -7.19 5.37 -19.86 -0.11 -7.30 16 11 C 0.51 17.55 2.83 71.24 0.20 17.75 16 12 F -0.18 -5.91 15.97 44.97 0.72 -5.19 16 13 F -0.17 -5.21 15.31 44.97 0.69 -4.52 16 14 F -0.18 -7.25 13.65 44.97 0.61 -6.64 16 15 N -0.63 -27.45 2.34 -827.69 -1.94 -29.39 16 16 C 0.10 3.17 9.05 127.77 1.16 4.33 16 17 C 0.55 30.97 7.61 86.36 0.66 31.62 16 18 O -0.63 -41.71 14.35 -4.33 -0.06 -41.77 16 19 C -0.57 -31.20 8.74 24.83 0.22 -30.98 16 20 H 0.09 4.39 6.00 -2.91 -0.02 4.37 16 21 C 0.03 1.75 5.50 85.30 0.47 2.22 16 22 N -0.82 -50.41 11.83 21.83 0.26 -50.16 16 23 Si 0.99 40.65 29.56 68.60 2.03 42.68 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.99 7.67 -2.39 -0.02 1.98 16 30 H 0.10 2.61 6.39 -2.39 -0.02 2.60 16 31 H 0.09 2.56 5.74 -2.39 -0.01 2.55 16 32 H 0.14 3.92 7.90 -2.91 -0.02 3.90 16 33 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.14 3.97 7.16 -2.91 -0.02 3.95 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 2.20 6.09 -2.39 -0.01 2.19 16 38 H 0.08 1.98 6.34 -2.39 -0.02 1.97 16 39 H 0.27 15.18 8.29 -92.70 -0.77 14.41 16 Total: -1.00 -76.48 329.02 7.66 -68.81 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.10 Total: 23.71 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.26 Total: 2.47 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.68 Total: -79.55 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.06 Total: -41.77 kcal Atomic # 9 Polarization: -18.38 SS G_CDS: 2.02 Total: -16.36 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -76.48 7.66 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288523491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.736 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds