Wall clock time and date at job start Tue Mar 31 2020 11:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00529 * 2 1 3 5 5 C 1.34783 * 119.99694 * 274.99136 * 4 2 1 6 6 O 1.21274 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99574 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.46865 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47427 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99697 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00314 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99763 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46735 * 119.99949 * 13 11 9 16 16 H 1.48501 * 109.47119 * 240.00309 * 13 11 9 17 17 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 18 18 C 1.38254 * 119.99823 * 280.02144 * 17 2 1 19 19 C 1.38216 * 119.99725 * 180.02562 * 18 17 2 20 20 C 1.38256 * 120.00072 * 359.95675 * 19 18 17 21 21 C 1.38208 * 119.99948 * 359.78465 * 20 19 18 22 22 C 1.50698 * 120.00309 * 180.25631 * 21 20 19 23 23 F 1.39904 * 109.46894 * 270.23917 * 22 21 20 24 24 F 1.39902 * 109.46904 * 30.23318 * 22 21 20 25 25 F 1.39899 * 109.47458 * 150.23713 * 22 21 20 26 26 C 1.38212 * 119.99857 * 100.00548 * 17 2 1 27 27 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 29 29 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99853 * 94.99797 * 4 2 1 31 31 H 1.08998 * 109.47230 * 300.00129 * 7 5 4 32 32 H 1.09003 * 109.47235 * 60.00861 * 7 5 4 33 33 H 1.09005 * 109.47279 * 300.00220 * 8 7 5 34 34 H 1.08998 * 109.47356 * 59.99876 * 8 7 5 35 35 H 0.96998 * 120.00017 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.00486 * 359.97438 * 18 17 2 37 37 H 1.08001 * 119.99701 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00058 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.99812 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8584 1.1583 2.4117 7 6 2.6500 -0.7287 3.5873 8 6 2.7009 0.2541 4.7587 9 6 3.2043 -0.4560 5.9889 10 1 3.4618 -1.5038 5.9402 11 6 3.3362 0.2319 7.1766 12 7 3.0223 1.5075 7.2360 13 14 3.9596 -0.6486 8.7016 14 1 4.2404 -2.0693 8.3729 15 1 5.2059 0.0049 9.1757 16 1 2.9286 -0.5814 9.7682 17 6 2.0322 -0.7104 -1.2306 18 6 2.0661 -2.0921 -1.2656 19 6 2.5272 -2.7437 -2.3940 20 6 2.9537 -2.0137 -3.4880 21 6 2.9147 -0.6326 -3.4549 22 6 3.3741 0.1631 -4.6495 23 9 4.7432 0.4275 -4.5351 24 9 3.1368 -0.5699 -5.8172 25 9 2.6691 1.3701 -4.7050 26 6 2.4586 0.0193 -2.3242 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 2.2489 -1.6319 1.1525 31 1 1.9777 -1.5510 3.8324 32 1 3.6493 -1.1205 3.3977 33 1 3.3729 1.0767 4.5139 34 1 1.7015 0.6457 4.9482 35 1 3.1154 1.9915 8.0714 36 1 1.7331 -2.6624 -0.4111 37 1 2.5541 -3.8230 -2.4212 38 1 3.3136 -2.5228 -4.3698 39 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291034085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:17 Heat of formation + Delta-G solvation = -180.171401 kcal Electronic energy + Delta-G solvation = -25307.094736 eV Core-core repulsion = 20991.983842 eV Total energy + Delta-G solvation = -4315.110895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.47730 -48.00089 -47.93043 -40.35889 -38.98784 -35.68140 -33.46968 -32.26880 -32.05007 -30.85620 -29.41401 -26.45742 -25.81620 -24.16461 -22.82267 -22.01092 -20.72388 -19.75265 -18.80435 -18.68848 -18.46975 -17.03594 -16.65913 -16.12809 -15.83041 -15.16608 -14.97213 -14.86378 -14.77804 -14.51488 -14.41178 -14.36450 -14.13491 -14.09504 -13.87573 -13.60812 -13.30229 -13.00995 -12.85309 -12.50186 -12.25360 -12.07912 -11.87408 -11.60329 -11.18087 -11.13453 -10.95733 -10.59383 -9.98460 -9.69508 -9.65734 -9.42110 -9.18007 -9.01644 -8.90541 -8.33821 -5.97645 -4.02064 0.49510 0.78585 2.30898 2.99818 3.19989 3.31486 3.33343 3.38546 3.41436 3.48566 3.68825 4.08775 4.21552 4.39613 4.46239 4.55201 4.74239 4.91510 5.00109 5.16769 5.29769 5.37495 5.38215 5.48243 5.61693 5.71222 5.75813 5.83363 6.04403 6.11677 6.19543 6.21045 6.30962 6.65326 6.86190 7.72847 7.79595 7.84236 8.05385 8.36752 8.71824 9.06646 9.61671 11.13322 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.002308 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.825739 B =12130.345319 C =12190.679846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.180 3.820 3 H 0.098 0.902 4 N -0.740 5.740 5 C 0.512 3.488 6 O -0.531 6.531 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.084 4.084 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.181 4.181 22 C 0.509 3.491 23 F -0.176 7.176 24 F -0.178 7.178 25 F -0.176 7.176 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.396 0.604 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -8.986 -26.011 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 H 0.116 0.884 4 N -0.395 5.395 5 C 0.301 3.699 6 O -0.406 6.406 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.092 4.092 21 C -0.182 4.182 22 C 0.455 3.545 23 F -0.157 7.157 24 F -0.160 7.160 25 F -0.157 7.157 26 C -0.079 4.079 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.402 -7.924 -25.856 27.149 hybrid contribution 0.557 -0.760 0.542 1.087 sum -1.845 -8.684 -25.314 26.825 Atomic orbital electron populations 1.22177 0.94049 1.02393 1.03017 1.19716 0.94329 0.97030 0.81423 0.88401 1.46378 1.69767 1.13895 1.09491 1.21595 0.76292 0.87646 0.84392 1.90673 1.48778 1.16344 1.84778 1.21875 1.00924 1.01070 0.93107 1.18906 0.98393 0.93337 0.89464 1.21254 1.44283 0.96368 0.94594 0.92567 1.25028 0.95560 0.94848 0.98979 1.70004 1.48159 1.08160 1.26477 0.86540 0.78521 0.79752 0.83171 1.19760 1.21012 1.21012 1.20034 0.98958 0.93964 0.95546 1.21250 0.96545 0.93855 0.98277 1.21150 0.98923 1.00542 0.92695 1.20956 0.97058 0.91862 0.99339 1.19928 1.08586 0.94941 0.94747 1.18296 0.75319 0.77878 0.83038 1.93242 1.32162 1.94225 1.96069 1.93187 1.94216 1.77111 1.51439 1.93204 1.78638 1.47254 1.96633 1.20820 0.95024 1.00850 0.91166 0.90997 0.91741 0.92327 0.76954 0.90199 0.90212 0.95804 0.95793 0.92989 0.84834 0.84511 0.84679 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.46 37.16 0.35 -1.34 16 2 C 0.18 2.08 2.78 -69.08 -0.19 1.89 16 3 H 0.10 1.31 7.44 -51.93 -0.39 0.93 16 4 N -0.74 -9.55 5.03 -54.93 -0.28 -9.83 16 5 C 0.51 9.35 7.79 -10.99 -0.09 9.26 16 6 O -0.53 -11.98 15.64 5.56 0.09 -11.89 16 7 C -0.13 -2.54 5.64 -27.89 -0.16 -2.70 16 8 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 9 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 13 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 18 C -0.08 -0.61 9.06 -39.58 -0.36 -0.97 16 19 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 20 C -0.07 -0.54 9.40 -39.59 -0.37 -0.92 16 21 C -0.18 -1.60 5.45 -104.63 -0.57 -2.17 16 22 C 0.51 4.70 3.36 36.00 0.12 4.82 16 23 F -0.18 -1.79 17.30 2.25 0.04 -1.75 16 24 F -0.18 -1.60 16.47 2.25 0.04 -1.56 16 25 F -0.18 -1.73 16.46 2.25 0.04 -1.69 16 26 C -0.06 -0.56 9.02 -39.58 -0.36 -0.92 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.40 3.93 6.87 -40.82 -0.28 3.65 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.13 0.79 6.92 -52.49 -0.36 0.42 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 0.76 7.61 -52.49 -0.40 0.36 16 39 H 0.14 1.21 7.58 -52.49 -0.40 0.81 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -33.63 348.28 -6.92 -40.56 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.75 Total: -0.85 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.07 Total: -8.18 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.46 Total: -36.36 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.63 -6.92 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291034085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.615 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds