Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00529 * 2 1 3 5 5 C 1.34783 * 119.99694 * 274.99136 * 4 2 1 6 6 O 1.21274 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99574 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.46865 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47427 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99697 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00314 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99763 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46735 * 119.99949 * 13 11 9 16 16 H 1.48501 * 109.47119 * 240.00309 * 13 11 9 17 17 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 18 18 C 1.38254 * 119.99823 * 280.02144 * 17 2 1 19 19 C 1.38216 * 119.99725 * 180.02562 * 18 17 2 20 20 C 1.38256 * 120.00072 * 359.95675 * 19 18 17 21 21 C 1.38208 * 119.99948 * 359.78465 * 20 19 18 22 22 C 1.50698 * 120.00309 * 180.25631 * 21 20 19 23 23 F 1.39904 * 109.46894 * 270.23917 * 22 21 20 24 24 F 1.39902 * 109.46904 * 30.23318 * 22 21 20 25 25 F 1.39899 * 109.47458 * 150.23713 * 22 21 20 26 26 C 1.38212 * 119.99857 * 100.00548 * 17 2 1 27 27 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 29 29 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99853 * 94.99797 * 4 2 1 31 31 H 1.08998 * 109.47230 * 300.00129 * 7 5 4 32 32 H 1.09003 * 109.47235 * 60.00861 * 7 5 4 33 33 H 1.09005 * 109.47279 * 300.00220 * 8 7 5 34 34 H 1.08998 * 109.47356 * 59.99876 * 8 7 5 35 35 H 0.96998 * 120.00017 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.00486 * 359.97438 * 18 17 2 37 37 H 1.08001 * 119.99701 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00058 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.99812 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8584 1.1583 2.4117 7 6 2.6500 -0.7287 3.5873 8 6 2.7009 0.2541 4.7587 9 6 3.2043 -0.4560 5.9889 10 1 3.4618 -1.5038 5.9402 11 6 3.3362 0.2319 7.1766 12 7 3.0223 1.5075 7.2360 13 14 3.9596 -0.6486 8.7016 14 1 4.2404 -2.0693 8.3729 15 1 5.2059 0.0049 9.1757 16 1 2.9286 -0.5814 9.7682 17 6 2.0322 -0.7104 -1.2306 18 6 2.0661 -2.0921 -1.2656 19 6 2.5272 -2.7437 -2.3940 20 6 2.9537 -2.0137 -3.4880 21 6 2.9147 -0.6326 -3.4549 22 6 3.3741 0.1631 -4.6495 23 9 4.7432 0.4275 -4.5351 24 9 3.1368 -0.5699 -5.8172 25 9 2.6691 1.3701 -4.7050 26 6 2.4586 0.0193 -2.3242 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 2.2489 -1.6319 1.1525 31 1 1.9777 -1.5510 3.8324 32 1 3.6493 -1.1205 3.3977 33 1 3.3729 1.0767 4.5139 34 1 1.7015 0.6457 4.9482 35 1 3.1154 1.9915 8.0714 36 1 1.7331 -2.6624 -0.4111 37 1 2.5541 -3.8230 -2.4212 38 1 3.3136 -2.5228 -4.3698 39 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291034085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -200.677870 kcal Electronic energy + Delta-G solvation = -25307.983963 eV Core-core repulsion = 20991.983842 eV Total energy + Delta-G solvation = -4316.000122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.21821 -48.73598 -48.69051 -41.27378 -40.16185 -36.79014 -35.52804 -33.42248 -32.87363 -32.43211 -30.34571 -27.72540 -27.11320 -25.19392 -23.61224 -23.47039 -21.77476 -21.14115 -19.55052 -19.42280 -19.31025 -18.76409 -17.61491 -17.26808 -17.04383 -16.49900 -16.39538 -15.99700 -15.61615 -15.53004 -15.25889 -15.13996 -14.94220 -14.85080 -14.82486 -14.75705 -14.40325 -14.22747 -14.02425 -13.67327 -13.44221 -13.25297 -13.18777 -12.84502 -12.68778 -12.44212 -12.28781 -11.95812 -11.89216 -11.61823 -11.26813 -10.75609 -10.57102 -10.25266 -10.20351 -9.90835 -8.17113 -6.30842 -0.12172 0.16434 1.43158 1.44365 1.57544 1.60159 1.73185 2.17834 2.43197 2.49147 2.68046 2.96122 3.16242 3.36547 3.45178 3.79789 4.00118 4.04050 4.13258 4.17250 4.29724 4.40425 4.52749 4.58683 4.60678 4.70852 4.84022 4.89856 5.09024 5.11372 5.20767 5.27475 5.30106 5.50191 5.56755 5.65528 5.72884 5.87359 6.19035 6.59986 6.88384 7.35485 7.39733 8.95749 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.002308 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.825739 B =12130.345319 C =12190.679846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 H 0.071 0.929 4 N -0.713 5.713 5 C 0.514 3.486 6 O -0.585 6.585 7 C -0.119 4.119 8 C 0.041 3.959 9 C -0.540 4.540 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.938 5.938 13 Si 0.973 3.027 14 H -0.251 1.251 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.094 4.094 18 C -0.079 4.079 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.191 4.191 22 C 0.509 3.491 23 F -0.183 7.183 24 F -0.176 7.176 25 F -0.183 7.183 26 C -0.073 4.073 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.415 0.585 31 H 0.107 0.893 32 H 0.104 0.896 33 H -0.019 1.019 34 H -0.017 1.017 35 H 0.262 0.738 36 H 0.155 0.845 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -12.856 -26.795 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 H 0.089 0.911 4 N -0.368 5.368 5 C 0.303 3.697 6 O -0.465 6.465 7 C -0.159 4.159 8 C 0.003 3.997 9 C -0.578 4.578 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.797 3.203 14 H -0.175 1.175 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.095 4.095 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.090 4.090 21 C -0.192 4.192 22 C 0.455 3.545 23 F -0.165 7.165 24 F -0.157 7.157 25 F -0.164 7.164 26 C -0.092 4.092 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.254 0.746 31 H 0.126 0.874 32 H 0.122 0.878 33 H -0.001 1.001 34 H 0.001 0.999 35 H 0.071 0.929 36 H 0.173 0.827 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.956 -11.862 -26.694 29.276 hybrid contribution 0.410 0.443 0.669 0.902 sum -1.546 -11.418 -26.024 28.461 Atomic orbital electron populations 1.22120 0.93236 1.03488 1.02239 1.19699 0.94957 0.96005 0.81691 0.91064 1.46034 1.67879 1.14570 1.08330 1.21327 0.76003 0.86858 0.85542 1.90663 1.51432 1.18659 1.85715 1.21640 1.03232 0.99794 0.91214 1.18699 0.94805 0.93722 0.92454 1.21757 1.43640 0.97338 0.95079 0.90491 1.26141 0.95723 0.95566 1.03142 1.70183 1.49756 1.10343 1.27587 0.85284 0.77622 0.79270 0.78130 1.17472 1.20793 1.20691 1.19764 1.00537 0.94844 0.94316 1.21513 0.95816 0.92869 0.99472 1.21516 0.97202 1.02110 0.91520 1.21296 0.96139 0.91165 1.00422 1.19948 1.09329 0.95727 0.94221 1.18388 0.74912 0.77757 0.83418 1.93225 1.32813 1.94300 1.96131 1.93187 1.94164 1.76964 1.51384 1.93189 1.78743 1.47799 1.96690 1.20822 0.95753 1.00837 0.91742 0.94011 0.90302 0.90206 0.74647 0.87442 0.87783 1.00084 0.99875 0.92916 0.82712 0.81187 0.82805 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.46 71.98 0.68 -2.49 16 2 C 0.18 4.11 2.78 44.25 0.12 4.23 16 3 H 0.07 2.02 7.44 -2.39 -0.02 2.01 16 4 N -0.71 -17.49 5.03 -446.10 -2.24 -19.73 16 5 C 0.51 18.94 7.79 87.65 0.68 19.62 16 6 O -0.59 -27.92 15.64 -3.01 -0.05 -27.96 16 7 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 8 C 0.04 2.24 4.26 29.85 0.13 2.37 16 9 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 10 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 11 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 12 N -0.94 -59.47 13.29 21.45 0.28 -59.18 16 13 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 14 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C -0.09 -1.60 4.95 -19.86 -0.10 -1.70 16 18 C -0.08 -0.90 9.06 22.27 0.20 -0.70 16 19 C -0.11 -0.93 10.05 22.27 0.22 -0.71 16 20 C -0.07 -0.84 9.40 22.27 0.21 -0.63 16 21 C -0.19 -3.10 5.45 -19.87 -0.11 -3.21 16 22 C 0.51 9.03 3.36 71.24 0.24 9.27 16 23 F -0.18 -3.65 17.30 44.97 0.78 -2.87 16 24 F -0.18 -2.92 16.47 44.97 0.74 -2.18 16 25 F -0.18 -3.60 16.46 44.97 0.74 -2.86 16 26 C -0.07 -1.32 9.02 22.27 0.20 -1.11 16 27 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.42 6.91 6.87 -92.71 -0.64 6.28 16 31 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 33 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 34 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.16 1.08 6.92 -2.91 -0.02 1.06 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.15 1.18 7.61 -2.91 -0.02 1.16 16 39 H 0.13 2.43 7.58 -2.91 -0.02 2.41 16 Total: -1.00 -77.42 348.28 6.08 -71.34 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.45 Total: 7.08 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.35 Total: -9.63 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.96 Total: -78.91 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.96 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 2.26 Total: -7.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -77.42 6.08 -71.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291034085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.338 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds