Wall clock time and date at job start Tue Mar 31 2020 11:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 120.00208 * 2 1 4 4 N 1.46493 * 109.47171 * 124.99505 * 3 2 1 5 5 C 1.46504 * 120.00316 * 263.33478 * 4 3 2 6 6 C 1.50696 * 109.47239 * 270.00172 * 5 4 3 7 7 H 1.08006 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00387 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99892 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00215 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47037 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47159 * 119.99921 * 10 8 6 13 13 H 1.48499 * 109.47002 * 239.99809 * 10 8 6 14 14 C 1.34775 * 120.00024 * 83.33163 * 4 3 2 15 15 O 1.21570 * 120.00050 * 183.81857 * 14 4 3 16 16 C 1.47719 * 119.99914 * 3.82520 * 14 4 3 17 17 C 1.41063 * 125.98261 * 173.69422 * 16 14 4 18 18 C 1.35590 * 107.79948 * 180.02562 * 17 16 14 19 19 O 1.35774 * 126.08620 * 180.02562 * 18 17 16 20 20 C 1.42894 * 116.99886 * 4.29836 * 19 18 17 21 21 F 1.39905 * 109.47179 * 303.17481 * 20 19 18 22 22 F 1.39901 * 109.47277 * 63.16898 * 20 19 18 23 23 N 1.35845 * 107.83167 * 359.97438 * 18 17 16 24 24 C 1.46497 * 125.94881 * 180.02562 * 23 18 17 25 25 N 1.31863 * 125.98303 * 353.72158 * 16 14 4 26 26 H 1.08005 * 119.99741 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00261 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99741 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46651 * 4.99841 * 3 2 1 30 30 H 1.08996 * 109.46663 * 244.99903 * 3 2 1 31 31 H 1.08998 * 109.46872 * 29.99955 * 5 4 3 32 32 H 1.08997 * 109.47452 * 150.00026 * 5 4 3 33 33 H 0.97000 * 119.99540 * 179.97438 * 9 8 6 34 34 H 1.08003 * 126.10064 * 0.02562 * 17 16 14 35 35 H 1.08997 * 109.47357 * 183.17477 * 20 19 18 36 36 H 1.09000 * 109.47527 * 265.03512 * 24 23 18 37 37 H 1.09005 * 109.47439 * 25.04393 * 24 23 18 38 38 H 1.09007 * 109.47160 * 145.03838 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6099 1.9958 2.3797 6 6 3.0269 3.4430 2.3278 7 1 3.5281 3.8295 1.4527 8 6 2.7686 4.2737 3.3974 9 7 2.1578 3.8032 4.4630 10 14 3.2862 6.0675 3.3333 11 1 3.9496 6.3451 2.0341 12 1 2.0879 6.9337 3.4717 13 1 4.2319 6.3497 4.4429 14 6 4.2026 0.7458 1.0241 15 8 4.9469 0.7072 1.9845 16 6 4.6232 0.1503 -0.2607 17 6 5.8978 -0.3799 -0.5506 18 6 5.8798 -0.8259 -1.8309 19 8 6.9150 -1.4067 -2.4901 20 6 8.1072 -1.6489 -1.7406 21 9 8.5655 -0.4463 -1.1918 22 9 7.8349 -2.5569 -0.7117 23 7 4.6412 -0.5894 -2.3364 24 6 4.1882 -0.9164 -3.6907 25 7 3.8730 0.0218 -1.3375 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.5292 1.9335 2.5070 32 1 3.1034 1.5054 3.2188 33 1 1.9765 4.3876 5.2156 34 1 6.7382 -0.4228 0.1264 35 1 8.8718 -2.0630 -2.3978 36 1 4.3042 -0.0437 -4.3333 37 1 4.7845 -1.7396 -4.0845 38 1 3.1386 -1.2095 -3.6619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292496021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:02 Heat of formation + Delta-G solvation = -55.309424 kcal Electronic energy + Delta-G solvation = -26721.565676 eV Core-core repulsion = 22431.789164 eV Total energy + Delta-G solvation = -4289.776511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.52981 -47.59645 -41.47870 -38.98672 -38.12463 -35.61750 -33.45576 -33.04267 -31.97632 -29.85326 -27.94369 -27.03833 -26.28528 -25.40100 -23.59628 -21.66296 -21.44415 -19.87466 -19.32580 -18.32534 -18.23593 -17.80059 -16.69656 -16.46156 -16.14263 -15.96407 -15.42431 -14.81747 -14.55217 -14.37191 -14.22510 -14.13256 -13.99788 -13.96242 -13.74939 -13.03343 -12.94763 -12.80880 -12.64050 -12.45439 -12.25534 -12.04011 -11.68832 -11.24667 -10.98486 -10.82275 -10.57686 -10.53423 -10.15396 -9.58558 -9.23325 -9.19579 -8.96276 -8.56474 -8.39474 -7.65884 -6.00521 -4.05239 1.44048 1.50371 2.23644 2.62825 2.70517 3.17670 3.33515 3.40888 3.45588 3.85195 3.95315 4.03133 4.28722 4.35707 4.48960 4.86008 4.97935 5.05209 5.23194 5.32532 5.36167 5.46352 5.56460 5.61272 5.92846 6.00340 6.18232 6.28544 6.53217 6.84033 6.96638 7.04264 7.16535 7.43051 7.47664 7.59367 7.96272 8.25911 8.38463 8.89327 9.05599 9.59596 11.07626 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.004132 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.771255 B = 6775.244643 C = 7922.205301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.129 3.871 4 N -0.575 5.575 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.582 3.418 15 O -0.524 6.524 16 C 0.073 3.927 17 C -0.265 4.265 18 C 0.252 3.748 19 O -0.319 6.319 20 C 0.428 3.572 21 F -0.189 7.189 22 F -0.192 7.192 23 N -0.363 5.363 24 C 0.102 3.898 25 N -0.234 5.234 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 -13.180 -19.200 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.162 4.162 3 C 0.005 3.995 4 N -0.305 5.305 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.365 3.635 15 O -0.398 6.398 16 C -0.094 4.094 17 C -0.295 4.295 18 C 0.085 3.915 19 O -0.232 6.232 20 C 0.337 3.663 21 F -0.171 7.171 22 F -0.174 7.174 23 N -0.154 5.154 24 C -0.039 4.039 25 N -0.064 5.064 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.905 -13.022 -19.252 23.981 hybrid contribution 1.088 0.797 0.427 1.415 sum 6.993 -12.225 -18.825 23.511 Atomic orbital electron populations 1.23731 0.95770 1.01430 1.02583 1.23295 0.95904 0.98978 0.98019 1.20910 0.92986 0.95085 0.90480 1.48145 1.13302 1.52561 1.16464 1.19404 0.96186 0.91872 0.79858 1.21477 1.38512 0.94231 1.02352 0.92264 1.24922 0.95059 0.98933 0.95090 1.69953 1.41627 1.35905 1.05773 0.86437 0.78249 0.84559 0.78157 1.19779 1.20980 1.20846 1.16948 0.82587 0.79147 0.84789 1.90782 1.52810 1.58845 1.37381 1.22362 0.93027 0.99573 0.94437 1.21204 1.00827 1.12674 0.94807 1.18614 0.83389 0.98808 0.90729 1.86294 1.21554 1.76221 1.39178 1.23397 0.84599 0.75930 0.82333 1.93161 1.88434 1.48075 1.87443 1.93154 1.94027 1.67274 1.62908 1.48899 1.05486 1.48320 1.12724 1.21914 1.02450 1.01893 0.77653 1.78182 1.14894 1.17284 0.96086 0.88470 0.89075 0.88141 0.89572 0.88410 0.94495 0.93465 0.92766 0.81951 0.79477 0.90439 0.89336 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.84 14.32 29.01 0.42 -2.42 16 2 C -0.14 -2.33 8.93 -36.02 -0.32 -2.66 16 3 C 0.13 2.41 5.45 -5.19 -0.03 2.38 16 4 N -0.57 -13.20 2.46 -177.60 -0.44 -13.64 16 5 C 0.25 6.63 5.16 -5.19 -0.03 6.61 16 6 C -0.53 -15.25 9.38 -34.44 -0.32 -15.57 16 7 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.58 13.54 7.61 -12.39 -0.09 13.44 16 15 O -0.52 -14.02 16.46 5.30 0.09 -13.93 16 16 C 0.07 1.40 6.78 -82.91 -0.56 0.84 16 17 C -0.26 -4.53 8.85 -39.46 -0.35 -4.88 16 18 C 0.25 3.51 7.47 -16.72 -0.12 3.38 16 19 O -0.32 -3.27 10.35 -19.03 -0.20 -3.47 16 20 C 0.43 3.41 6.00 101.05 0.61 4.02 16 21 F -0.19 -2.07 15.56 2.25 0.04 -2.03 16 22 F -0.19 -2.02 16.63 2.25 0.04 -1.98 16 23 N -0.36 -4.83 4.03 -68.18 -0.28 -5.11 16 24 C 0.10 0.81 11.44 59.85 0.68 1.49 16 25 N -0.23 -3.85 8.16 33.34 0.27 -3.58 16 26 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.10 1.67 7.80 -52.48 -0.41 1.26 16 29 H 0.09 1.61 7.67 -51.92 -0.40 1.21 16 30 H 0.10 1.74 5.36 -51.93 -0.28 1.46 16 31 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 32 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.16 2.83 6.59 -52.48 -0.35 2.48 16 35 H 0.19 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 38 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -35.90 342.01 -4.13 -40.03 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.30 Total: -0.82 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -0.22 Total: 8.32 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.30 Total: -48.43 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.11 Total: -17.40 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.90 -4.13 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292496021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.284 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds