Wall clock time and date at job start Tue Mar 31 2020 11:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 120.00208 * 2 1 4 4 N 1.46493 * 109.47171 * 124.99505 * 3 2 1 5 5 C 1.46504 * 120.00316 * 263.33478 * 4 3 2 6 6 C 1.50696 * 109.47239 * 270.00172 * 5 4 3 7 7 H 1.08006 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00387 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99892 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00215 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47037 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47159 * 119.99921 * 10 8 6 13 13 H 1.48499 * 109.47002 * 239.99809 * 10 8 6 14 14 C 1.34775 * 120.00024 * 83.33163 * 4 3 2 15 15 O 1.21570 * 120.00050 * 183.81857 * 14 4 3 16 16 C 1.47719 * 119.99914 * 3.82520 * 14 4 3 17 17 C 1.41063 * 125.98261 * 173.69422 * 16 14 4 18 18 C 1.35590 * 107.79948 * 180.02562 * 17 16 14 19 19 O 1.35774 * 126.08620 * 180.02562 * 18 17 16 20 20 C 1.42894 * 116.99886 * 4.29836 * 19 18 17 21 21 F 1.39905 * 109.47179 * 303.17481 * 20 19 18 22 22 F 1.39901 * 109.47277 * 63.16898 * 20 19 18 23 23 N 1.35845 * 107.83167 * 359.97438 * 18 17 16 24 24 C 1.46497 * 125.94881 * 180.02562 * 23 18 17 25 25 N 1.31863 * 125.98303 * 353.72158 * 16 14 4 26 26 H 1.08005 * 119.99741 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00261 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99741 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46651 * 4.99841 * 3 2 1 30 30 H 1.08996 * 109.46663 * 244.99903 * 3 2 1 31 31 H 1.08998 * 109.46872 * 29.99955 * 5 4 3 32 32 H 1.08997 * 109.47452 * 150.00026 * 5 4 3 33 33 H 0.97000 * 119.99540 * 179.97438 * 9 8 6 34 34 H 1.08003 * 126.10064 * 0.02562 * 17 16 14 35 35 H 1.08997 * 109.47357 * 183.17477 * 20 19 18 36 36 H 1.09000 * 109.47527 * 265.03512 * 24 23 18 37 37 H 1.09005 * 109.47439 * 25.04393 * 24 23 18 38 38 H 1.09007 * 109.47160 * 145.03838 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6099 1.9958 2.3797 6 6 3.0269 3.4430 2.3278 7 1 3.5281 3.8295 1.4527 8 6 2.7686 4.2737 3.3974 9 7 2.1578 3.8032 4.4630 10 14 3.2862 6.0675 3.3333 11 1 3.9496 6.3451 2.0341 12 1 2.0879 6.9337 3.4717 13 1 4.2319 6.3497 4.4429 14 6 4.2026 0.7458 1.0241 15 8 4.9469 0.7072 1.9845 16 6 4.6232 0.1503 -0.2607 17 6 5.8978 -0.3799 -0.5506 18 6 5.8798 -0.8259 -1.8309 19 8 6.9150 -1.4067 -2.4901 20 6 8.1072 -1.6489 -1.7406 21 9 8.5655 -0.4463 -1.1918 22 9 7.8349 -2.5569 -0.7117 23 7 4.6412 -0.5894 -2.3364 24 6 4.1882 -0.9164 -3.6907 25 7 3.8730 0.0218 -1.3375 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.5292 1.9335 2.5070 32 1 3.1034 1.5054 3.2188 33 1 1.9765 4.3876 5.2156 34 1 6.7382 -0.4228 0.1264 35 1 8.8718 -2.0630 -2.3978 36 1 4.3042 -0.0437 -4.3333 37 1 4.7845 -1.7396 -4.0845 38 1 3.1386 -1.2095 -3.6619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292496021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:01 Heat of formation + Delta-G solvation = -81.096286 kcal Electronic energy + Delta-G solvation = -26722.683878 eV Core-core repulsion = 22431.789164 eV Total energy + Delta-G solvation = -4290.894714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.27085 -48.35923 -42.69898 -40.58457 -39.20887 -37.34480 -35.19675 -34.37560 -33.70833 -31.09236 -29.75904 -28.17457 -27.21008 -26.94424 -25.39097 -23.23527 -22.47498 -21.24363 -20.51293 -19.44892 -19.00771 -18.90698 -18.64233 -17.74930 -17.56981 -17.10090 -17.04272 -16.25675 -16.20106 -15.93865 -15.42880 -15.20663 -15.12490 -14.74465 -14.59645 -14.52292 -14.39606 -14.15701 -13.83546 -13.49407 -13.39619 -13.33050 -13.08789 -13.07998 -12.94787 -12.60985 -12.26206 -12.19866 -11.95124 -11.63509 -11.07504 -10.65151 -10.39841 -10.23669 -9.78291 -9.54154 -8.23062 -6.38095 0.16971 0.51798 0.89419 1.33465 1.37555 1.39874 1.52232 1.78344 2.19318 2.37331 2.41136 2.58703 3.06485 3.12661 3.42216 3.60529 3.71854 4.01441 4.11436 4.23695 4.26115 4.41123 4.43450 4.55032 4.69981 4.81334 4.84189 4.97933 5.04445 5.19194 5.20175 5.47805 5.71296 5.74073 5.80961 5.95257 6.02807 6.19620 6.57829 6.69457 7.14762 7.34388 8.84907 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.004132 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.771255 B = 6775.244643 C = 7922.205301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.164 4.164 3 C 0.131 3.869 4 N -0.579 5.579 5 C 0.262 3.738 6 C -0.546 4.546 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.279 1.279 14 C 0.576 3.424 15 O -0.577 6.577 16 C 0.045 3.955 17 C -0.290 4.290 18 C 0.273 3.727 19 O -0.304 6.304 20 C 0.418 3.582 21 F -0.209 7.209 22 F -0.209 7.209 23 N -0.347 5.347 24 C 0.087 3.913 25 N -0.231 5.231 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.030 0.970 32 H 0.004 0.996 33 H 0.269 0.731 34 H 0.149 0.851 35 H 0.260 0.740 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -13.556 -22.481 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.009 3.991 4 N -0.308 5.308 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.794 3.206 11 H -0.193 1.193 12 H -0.191 1.191 13 H -0.205 1.205 14 C 0.362 3.638 15 O -0.455 6.455 16 C -0.120 4.120 17 C -0.321 4.321 18 C 0.103 3.897 19 O -0.217 6.217 20 C 0.329 3.671 21 F -0.191 7.191 22 F -0.190 7.190 23 N -0.139 5.139 24 C -0.051 4.051 25 N -0.062 5.062 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.275 0.725 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.853 -13.417 -22.591 26.919 hybrid contribution 1.082 0.792 1.312 1.876 sum 6.935 -12.625 -21.279 25.696 Atomic orbital electron populations 1.23992 0.94982 1.02952 0.98951 1.23047 0.96482 0.97510 1.01280 1.21062 0.92396 0.96465 0.89151 1.48130 1.14313 1.52066 1.16332 1.18883 0.94934 0.91260 0.80744 1.21681 1.39020 0.95227 1.02551 0.92972 1.25838 0.94719 1.03764 0.94449 1.70063 1.42196 1.37790 1.06429 0.85337 0.78363 0.78734 0.78181 1.19343 1.19133 1.20508 1.17475 0.81929 0.78497 0.85912 1.90723 1.54191 1.60970 1.39650 1.21646 0.94481 1.02164 0.93663 1.21132 0.99940 1.14519 0.96504 1.18464 0.84404 0.97191 0.89598 1.86377 1.21117 1.75250 1.38933 1.24716 0.84611 0.74979 0.82769 1.93125 1.88472 1.49549 1.87941 1.93123 1.94122 1.67707 1.64099 1.49271 1.04947 1.46118 1.13589 1.22482 1.03926 1.03879 0.74795 1.78027 1.15073 1.17243 0.95886 0.87896 0.86460 0.88472 0.89991 0.87443 0.95214 0.97785 0.92241 0.83341 0.72474 0.88482 0.86427 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.78 0.97 -3.64 16 2 C -0.16 -5.30 8.93 25.65 0.23 -5.07 16 3 C 0.13 4.99 5.45 85.64 0.47 5.46 16 4 N -0.58 -28.07 2.46 -834.07 -2.05 -30.12 16 5 C 0.26 15.04 5.16 85.63 0.44 15.49 16 6 C -0.55 -32.86 9.38 25.60 0.24 -32.62 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 8 C 0.01 0.69 5.46 84.65 0.46 1.15 16 9 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 10 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.58 28.54 7.61 86.75 0.66 29.20 16 15 O -0.58 -33.41 16.46 -3.94 -0.06 -33.47 16 16 C 0.05 1.80 6.78 42.34 0.29 2.08 16 17 C -0.29 -10.17 8.85 22.35 0.20 -9.97 16 18 C 0.27 7.18 7.47 83.46 0.62 7.80 16 19 O -0.30 -5.31 10.35 -91.02 -0.94 -6.25 16 20 C 0.42 5.62 6.00 113.37 0.68 6.30 16 21 F -0.21 -4.39 15.56 44.97 0.70 -3.69 16 22 F -0.21 -4.15 16.63 44.97 0.75 -3.40 16 23 N -0.35 -8.45 4.03 -480.55 -1.94 -10.39 16 24 C 0.09 1.04 11.44 127.77 1.46 2.50 16 25 N -0.23 -7.45 8.16 -48.42 -0.40 -7.84 16 26 H 0.10 2.67 7.84 -2.91 -0.02 2.65 16 27 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.10 3.22 7.80 -2.91 -0.02 3.20 16 29 H 0.08 3.11 7.67 -2.38 -0.02 3.09 16 30 H 0.11 3.83 5.36 -2.39 -0.01 3.82 16 31 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.00 0.26 7.37 -2.39 -0.02 0.25 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.15 5.50 6.59 -2.91 -0.02 5.48 16 35 H 0.26 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.79 8.04 -2.38 -0.02 0.77 16 38 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -83.82 342.01 6.18 -77.64 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.09 Total: 7.50 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.72 Total: 18.68 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.10 Total: -105.04 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.01 Total: -39.73 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 1.45 Total: -7.09 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -83.82 6.18 -77.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292496021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.461 kcal (2) G-P(sol) polarization free energy of solvation -83.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds