Wall clock time and date at job start Tue Mar 31 2020 11:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47446 * 2 1 4 4 C 1.53010 * 109.47006 * 240.00516 * 2 1 3 5 5 C 1.50697 * 109.47150 * 175.00307 * 4 2 1 6 6 C 1.38243 * 119.98240 * 269.72301 * 5 4 2 7 7 C 1.38218 * 120.01102 * 179.72686 * 6 5 4 8 8 C 1.38349 * 119.98617 * 0.54469 * 7 6 5 9 9 Cl 1.73598 * 120.01299 * 179.70459 * 8 7 6 10 10 C 1.38357 * 119.97543 * 359.73006 * 8 7 6 11 11 C 1.38218 * 119.98296 * 359.97438 * 10 8 7 12 12 N 1.46504 * 109.47522 * 120.00594 * 2 1 3 13 13 C 1.39680 * 119.99387 * 275.00283 * 12 2 1 14 14 C 1.39329 * 119.95543 * 359.97438 * 13 12 2 15 15 C 1.38484 * 120.42635 * 180.02562 * 14 13 12 16 16 C 1.37691 * 120.32447 * 0.25938 * 15 14 13 17 17 C 1.40752 * 119.88707 * 359.45163 * 16 15 14 18 18 C 1.41412 * 120.20478 * 180.27345 * 17 16 15 19 19 H 1.08000 * 120.00187 * 204.64344 * 18 17 16 20 20 C 1.39926 * 120.00070 * 24.63317 * 18 17 16 21 21 N 1.30828 * 120.00037 * 17.72791 * 20 18 17 22 22 Si 1.86798 * 120.00135 * 197.71845 * 20 18 17 23 23 H 1.48509 * 109.46976 * 90.00467 * 22 20 18 24 24 H 1.48495 * 109.47411 * 210.00234 * 22 20 18 25 25 H 1.48503 * 109.47283 * 330.00668 * 22 20 18 26 26 C 1.38281 * 119.94907 * 180.02562 * 13 12 2 27 27 H 1.08998 * 109.46888 * 299.99500 * 1 2 3 28 28 H 1.09002 * 109.46849 * 59.99986 * 1 2 3 29 29 H 1.09002 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 295.00118 * 4 2 1 31 31 H 1.08994 * 109.47089 * 54.99771 * 4 2 1 32 32 H 1.08002 * 119.99261 * 0.02562 * 6 5 4 33 33 H 1.08005 * 120.00708 * 180.27323 * 7 6 5 34 34 H 1.07996 * 120.00969 * 179.97438 * 10 8 7 35 35 H 1.08000 * 119.98904 * 179.97438 * 11 10 8 36 36 H 0.96996 * 119.99929 * 94.99233 * 12 2 1 37 37 H 1.08000 * 119.79248 * 0.03185 * 14 13 12 38 38 H 1.07993 * 119.84157 * 179.97438 * 15 14 13 39 39 H 1.07991 * 120.05580 * 179.71947 * 16 15 14 40 40 H 0.97001 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.08004 * 120.16173 * 359.94475 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3129 6 6 4.1321 0.4465 -1.9733 7 6 5.5095 0.5475 -2.0271 8 6 6.2976 -0.4198 -1.4294 9 17 8.0277 -0.2976 -1.5030 10 6 5.7064 -1.4848 -0.7734 11 6 4.3288 -1.5815 -0.7151 12 7 2.0185 -0.6907 1.1961 13 6 2.1518 0.0061 2.3993 14 6 1.8205 1.3580 2.4607 15 6 1.9495 2.0584 3.6484 16 6 2.4120 1.4270 4.7812 17 6 2.7447 0.0601 4.7359 18 6 3.2148 -0.5965 5.8967 19 1 3.8289 -1.4804 5.8060 20 6 2.8847 -0.1011 7.1630 21 7 1.8858 0.7328 7.2991 22 14 3.8699 -0.6304 8.6591 23 1 5.0041 0.3066 8.8618 24 1 2.9949 -0.6152 9.8588 25 1 4.3942 -2.0034 8.4462 26 6 2.6134 -0.6467 3.5276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -1.7715 -1.2058 31 1 1.6054 -0.2616 -2.1370 32 1 3.5167 1.1994 -2.4433 33 1 5.9705 1.3792 -2.5393 34 1 6.3211 -2.2405 -0.3070 35 1 3.8672 -2.4131 -0.2034 36 1 2.2491 -1.6319 1.1524 37 1 1.4608 1.8631 1.5765 38 1 1.6904 3.1062 3.6852 39 1 2.5151 1.9784 5.7039 40 1 1.6567 1.0760 8.1770 41 1 2.8704 -1.6947 3.4812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313415438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:31 Heat of formation + Delta-G solvation = 24.184968 kcal Electronic energy + Delta-G solvation = -22881.378846 eV Core-core repulsion = 19557.695414 eV Total energy + Delta-G solvation = -3323.683433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64567 -38.00472 -36.67245 -35.87557 -33.59561 -32.03922 -31.12376 -30.36888 -29.63194 -26.95020 -26.32750 -25.12988 -22.92407 -22.04766 -21.25510 -20.54898 -19.58872 -17.37234 -17.17618 -15.82877 -15.68832 -15.35461 -15.11305 -14.82048 -14.29545 -14.01446 -13.66925 -13.58395 -13.21073 -13.07318 -12.65841 -12.49570 -12.22040 -12.07328 -11.91281 -11.61331 -11.47851 -11.39541 -11.34413 -11.06198 -10.92126 -10.86648 -10.71720 -10.54130 -10.28722 -9.71429 -9.28220 -9.19525 -9.07842 -8.71673 -8.54595 -7.34508 -6.67884 -6.16180 -4.27567 1.10011 1.25559 2.08433 2.88626 3.11773 3.15273 3.26492 3.41441 3.56917 3.99190 4.20005 4.66677 4.68136 4.75879 4.82657 5.07965 5.16509 5.26165 5.41519 5.48558 5.64775 5.69796 5.80346 5.86570 5.89222 5.92859 6.15653 6.17927 6.20099 6.37474 6.46752 6.50326 6.61087 6.75819 7.07311 7.11186 7.15335 7.38374 7.43738 7.82972 7.95235 8.18299 8.29372 8.55073 8.67171 8.83085 9.03860 9.16274 10.28281 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003580 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.398995 B = 7820.195060 C = 9387.211449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.090 4.090 5 C -0.064 4.064 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.040 4.040 9 Cl -0.079 7.079 10 C -0.105 4.105 11 C -0.093 4.093 12 N -0.754 5.754 13 C 0.229 3.771 14 C -0.301 4.301 15 C -0.076 4.076 16 C -0.200 4.200 17 C 0.142 3.858 18 C -0.465 4.465 19 H 0.075 0.925 20 C 0.078 3.922 21 N -0.793 5.793 22 Si 0.905 3.095 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.289 4.289 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.384 0.616 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.278 0.722 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -2.128 -17.010 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.056 3.944 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.065 4.065 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.066 4.066 9 Cl -0.051 7.051 10 C -0.124 4.124 11 C -0.111 4.111 12 N -0.387 5.387 13 C 0.131 3.869 14 C -0.324 4.324 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.139 3.861 18 C -0.495 4.495 19 H 0.093 0.907 20 C -0.139 4.139 21 N -0.418 5.418 22 Si 0.729 3.271 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.313 4.313 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.217 0.783 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.962 -1.841 -16.939 17.294 hybrid contribution 0.607 -0.499 0.832 1.144 sum 3.568 -2.340 -16.107 16.663 Atomic orbital electron populations 1.22310 0.96563 1.01832 1.01921 1.20612 0.92810 0.96888 0.84098 0.90587 1.20988 0.90807 1.02121 0.98915 1.19903 0.95914 0.94419 0.96227 1.20968 0.93829 0.97973 0.99747 1.20980 0.93559 0.98232 1.00047 1.20882 0.84212 0.98252 1.03269 1.98359 1.11271 1.98011 1.97411 1.21035 0.95221 0.97394 0.98765 1.20962 0.92553 0.99216 0.98393 1.44465 1.75866 1.11222 1.07139 1.17407 0.93987 0.91001 0.84495 1.19858 1.21231 0.93555 0.97736 1.20437 0.98744 0.97022 0.93287 1.21158 1.08542 0.95045 0.97267 1.17325 0.86611 0.91093 0.91063 1.19550 1.28789 1.11115 0.90063 0.90729 1.25872 0.93658 0.93671 1.00722 1.69862 1.21349 1.25096 1.25501 0.86380 0.80376 0.80148 0.80165 1.19340 1.20422 1.18723 1.20373 1.19139 0.98091 0.93730 0.91561 0.92863 0.92876 0.90569 0.89899 0.85303 0.85244 0.85113 0.85395 0.78250 0.89677 0.89837 0.86912 0.91101 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.42 37.16 0.35 -1.78 16 2 C 0.16 2.19 2.25 -67.92 -0.15 2.04 16 3 H 0.08 1.14 6.47 -51.93 -0.34 0.81 16 4 C -0.09 -0.93 4.89 -27.88 -0.14 -1.07 16 5 C -0.06 -0.74 4.95 -104.62 -0.52 -1.26 16 6 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 7 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 8 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 9 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 10 C -0.11 -1.29 9.83 -39.54 -0.39 -1.68 16 11 C -0.09 -1.11 9.09 -39.59 -0.36 -1.47 16 12 N -0.75 -12.59 4.70 -52.21 -0.25 -12.83 16 13 C 0.23 5.02 6.63 -83.86 -0.56 4.46 16 14 C -0.30 -6.75 8.86 -39.09 -0.35 -7.09 16 15 C -0.08 -1.83 10.02 -39.69 -0.40 -2.23 16 16 C -0.20 -5.35 8.69 -38.83 -0.34 -5.69 16 17 C 0.14 3.87 5.57 -106.85 -0.60 3.28 16 18 C -0.47 -12.65 9.05 -37.74 -0.34 -12.99 16 19 H 0.07 1.96 7.91 -52.49 -0.41 1.55 16 20 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 21 N -0.79 -20.98 10.96 55.55 0.61 -20.38 16 22 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 26 C -0.29 -7.15 9.63 -38.68 -0.37 -7.52 16 27 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.38 7.57 -52.49 -0.40 0.98 16 36 H 0.38 5.89 7.83 -40.82 -0.32 5.57 16 37 H 0.09 1.72 6.08 -52.49 -0.32 1.40 16 38 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 3.13 6.16 -52.49 -0.32 2.81 16 40 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 41 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -28.78 356.15 -11.51 -40.29 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.44 Total: 10.95 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -5.26 Total: -35.03 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.36 Total: -33.21 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.78 -11.51 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313415438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds