Wall clock time and date at job start Tue Mar 31 2020 11:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47446 * 2 1 4 4 C 1.53010 * 109.47006 * 240.00516 * 2 1 3 5 5 C 1.50697 * 109.47150 * 175.00307 * 4 2 1 6 6 C 1.38243 * 119.98240 * 269.72301 * 5 4 2 7 7 C 1.38218 * 120.01102 * 179.72686 * 6 5 4 8 8 C 1.38349 * 119.98617 * 0.54469 * 7 6 5 9 9 Cl 1.73598 * 120.01299 * 179.70459 * 8 7 6 10 10 C 1.38357 * 119.97543 * 359.73006 * 8 7 6 11 11 C 1.38218 * 119.98296 * 359.97438 * 10 8 7 12 12 N 1.46504 * 109.47522 * 120.00594 * 2 1 3 13 13 C 1.39680 * 119.99387 * 275.00283 * 12 2 1 14 14 C 1.39329 * 119.95543 * 359.97438 * 13 12 2 15 15 C 1.38484 * 120.42635 * 180.02562 * 14 13 12 16 16 C 1.37691 * 120.32447 * 0.25938 * 15 14 13 17 17 C 1.40752 * 119.88707 * 359.45163 * 16 15 14 18 18 C 1.41412 * 120.20478 * 180.27345 * 17 16 15 19 19 H 1.08000 * 120.00187 * 204.64344 * 18 17 16 20 20 C 1.39926 * 120.00070 * 24.63317 * 18 17 16 21 21 N 1.30828 * 120.00037 * 17.72791 * 20 18 17 22 22 Si 1.86798 * 120.00135 * 197.71845 * 20 18 17 23 23 H 1.48509 * 109.46976 * 90.00467 * 22 20 18 24 24 H 1.48495 * 109.47411 * 210.00234 * 22 20 18 25 25 H 1.48503 * 109.47283 * 330.00668 * 22 20 18 26 26 C 1.38281 * 119.94907 * 180.02562 * 13 12 2 27 27 H 1.08998 * 109.46888 * 299.99500 * 1 2 3 28 28 H 1.09002 * 109.46849 * 59.99986 * 1 2 3 29 29 H 1.09002 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 295.00118 * 4 2 1 31 31 H 1.08994 * 109.47089 * 54.99771 * 4 2 1 32 32 H 1.08002 * 119.99261 * 0.02562 * 6 5 4 33 33 H 1.08005 * 120.00708 * 180.27323 * 7 6 5 34 34 H 1.07996 * 120.00969 * 179.97438 * 10 8 7 35 35 H 1.08000 * 119.98904 * 179.97438 * 11 10 8 36 36 H 0.96996 * 119.99929 * 94.99233 * 12 2 1 37 37 H 1.08000 * 119.79248 * 0.03185 * 14 13 12 38 38 H 1.07993 * 119.84157 * 179.97438 * 15 14 13 39 39 H 1.07991 * 120.05580 * 179.71947 * 16 15 14 40 40 H 0.97001 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.08004 * 120.16173 * 359.94475 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3129 6 6 4.1321 0.4465 -1.9733 7 6 5.5095 0.5475 -2.0271 8 6 6.2976 -0.4198 -1.4294 9 17 8.0277 -0.2976 -1.5030 10 6 5.7064 -1.4848 -0.7734 11 6 4.3288 -1.5815 -0.7151 12 7 2.0185 -0.6907 1.1961 13 6 2.1518 0.0061 2.3993 14 6 1.8205 1.3580 2.4607 15 6 1.9495 2.0584 3.6484 16 6 2.4120 1.4270 4.7812 17 6 2.7447 0.0601 4.7359 18 6 3.2148 -0.5965 5.8967 19 1 3.8289 -1.4804 5.8060 20 6 2.8847 -0.1011 7.1630 21 7 1.8858 0.7328 7.2991 22 14 3.8699 -0.6304 8.6591 23 1 5.0041 0.3066 8.8618 24 1 2.9949 -0.6152 9.8588 25 1 4.3942 -2.0034 8.4462 26 6 2.6134 -0.6467 3.5276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -1.7715 -1.2058 31 1 1.6054 -0.2616 -2.1370 32 1 3.5167 1.1994 -2.4433 33 1 5.9705 1.3792 -2.5393 34 1 6.3211 -2.2405 -0.3070 35 1 3.8672 -2.4131 -0.2034 36 1 2.2491 -1.6319 1.1524 37 1 1.4608 1.8631 1.5765 38 1 1.6904 3.1062 3.6852 39 1 2.5151 1.9784 5.7039 40 1 1.6567 1.0760 8.1770 41 1 2.8704 -1.6947 3.4812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313415438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:30 Heat of formation + Delta-G solvation = 11.735534 kcal Electronic energy + Delta-G solvation = -22881.918694 eV Core-core repulsion = 19557.695414 eV Total energy + Delta-G solvation = -3324.223281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59011 -39.58628 -37.78874 -37.13754 -35.35152 -33.37867 -31.99165 -31.75649 -31.33635 -28.55375 -27.35474 -26.98432 -23.80476 -23.29474 -22.69367 -22.14849 -21.03122 -19.16858 -18.06380 -17.42319 -16.94863 -16.67299 -16.33802 -16.21028 -15.93261 -15.09422 -14.85178 -14.62143 -14.43807 -14.39342 -14.13300 -13.90147 -13.69424 -13.37022 -13.08998 -13.03859 -12.94716 -12.71638 -12.46964 -12.37380 -12.25688 -12.13938 -11.93013 -11.75127 -11.68468 -11.56650 -11.14801 -11.04087 -10.41995 -9.95161 -9.46168 -9.29804 -8.59104 -7.85218 -6.30142 0.20261 0.38040 1.07569 1.17911 1.37231 1.40227 1.51143 1.61841 2.22850 2.67787 2.82792 2.86876 3.79263 3.83980 3.91221 3.98790 4.10520 4.29998 4.42077 4.46981 4.53172 4.55391 4.76616 4.77053 4.79690 4.93889 4.98561 5.04970 5.13520 5.18891 5.20128 5.28906 5.30070 5.31413 5.46476 5.49110 5.61269 5.67315 5.90900 6.00650 6.06506 6.24235 6.35769 6.66926 6.94926 7.05415 7.12791 7.31906 8.39168 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003580 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.398995 B = 7820.195060 C = 9387.211449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.066 0.934 4 C -0.080 4.080 5 C -0.073 4.073 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.055 4.055 9 Cl -0.081 7.081 10 C -0.122 4.122 11 C -0.106 4.106 12 N -0.742 5.742 13 C 0.244 3.756 14 C -0.300 4.300 15 C -0.078 4.078 16 C -0.235 4.235 17 C 0.113 3.887 18 C -0.505 4.505 19 H 0.070 0.930 20 C 0.037 3.963 21 N -0.825 5.825 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.259 1.259 26 C -0.312 4.312 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.392 0.608 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.286 0.714 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -2.164 -18.918 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.127 4.127 7 C -0.136 4.136 8 C -0.081 4.081 9 Cl -0.052 7.052 10 C -0.141 4.141 11 C -0.124 4.124 12 N -0.374 5.374 13 C 0.142 3.858 14 C -0.323 4.323 15 C -0.097 4.097 16 C -0.256 4.256 17 C 0.110 3.890 18 C -0.534 4.534 19 H 0.088 0.912 20 C -0.178 4.178 21 N -0.451 5.451 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.337 4.337 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.227 0.773 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.360 -1.893 -18.905 19.146 hybrid contribution 0.744 -0.471 1.225 1.509 sum 3.104 -2.364 -17.680 18.106 Atomic orbital electron populations 1.22250 0.95506 1.02343 1.02042 1.20842 0.93488 0.96460 0.83858 0.91621 1.20949 0.89807 1.02838 0.98103 1.20121 0.96670 0.94399 0.96177 1.21314 0.93892 0.98214 0.99243 1.21264 0.94017 0.98417 0.99898 1.21085 0.84394 0.98784 1.03840 1.98353 1.11394 1.98023 1.97437 1.21206 0.95758 0.97824 0.99289 1.21177 0.92598 0.99893 0.98718 1.44570 1.74680 1.11598 1.06540 1.17425 0.91731 0.91060 0.85556 1.20154 1.20309 0.93806 0.98007 1.20726 0.97673 0.98158 0.93145 1.21065 1.11667 0.95246 0.97608 1.17679 0.87324 0.91706 0.92258 1.19794 1.30288 1.11931 0.91433 0.91214 1.26714 0.94225 0.93448 1.03363 1.69923 1.22474 1.26019 1.26658 0.85265 0.78748 0.79738 0.76282 1.18839 1.19111 1.18291 1.20497 1.20516 0.98349 0.94306 0.94495 0.89686 0.92220 0.89266 0.86817 0.82787 0.83727 0.84837 0.84697 0.77323 0.86904 0.87842 0.88985 0.90390 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.42 71.98 0.68 -2.88 16 2 C 0.16 3.74 2.25 44.99 0.10 3.84 16 3 H 0.07 1.73 6.47 -2.39 -0.02 1.72 16 4 C -0.08 -1.31 4.89 29.85 0.15 -1.16 16 5 C -0.07 -1.49 4.95 -19.86 -0.10 -1.58 16 6 C -0.11 -2.07 9.70 22.27 0.22 -1.86 16 7 C -0.12 -2.46 9.83 22.29 0.22 -2.24 16 8 C -0.05 -1.30 6.32 22.32 0.14 -1.15 16 9 Cl -0.08 -1.85 28.96 -2.72 -0.08 -1.92 16 10 C -0.12 -2.92 9.83 22.29 0.22 -2.70 16 11 C -0.11 -2.37 9.09 22.26 0.20 -2.17 16 12 N -0.74 -23.33 4.70 -319.10 -1.50 -24.83 16 13 C 0.24 10.51 6.63 38.16 0.25 10.76 16 14 C -0.30 -13.12 8.86 22.59 0.20 -12.92 16 15 C -0.08 -3.79 10.02 22.20 0.22 -3.57 16 16 C -0.24 -13.07 8.69 22.75 0.20 -12.87 16 17 C 0.11 6.41 5.57 -21.31 -0.12 6.30 16 18 C -0.50 -28.60 9.05 23.46 0.21 -28.39 16 19 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 20 C 0.04 1.96 5.14 85.25 0.44 2.40 16 21 N -0.82 -45.10 10.96 21.82 0.24 -44.86 16 22 Si 0.98 39.90 29.59 68.60 2.03 41.93 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 26 C -0.31 -15.77 9.63 22.86 0.22 -15.55 16 27 H 0.04 1.03 7.70 -2.39 -0.02 1.01 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 31 H 0.11 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.14 2.71 7.57 -2.91 -0.02 2.68 16 36 H 0.39 11.28 7.83 -92.71 -0.73 10.56 16 37 H 0.11 4.27 6.08 -2.91 -0.02 4.25 16 38 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.09 5.39 6.16 -2.92 -0.02 5.37 16 40 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 41 H 0.09 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -64.81 356.15 4.46 -60.35 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.32 Total: 35.06 kcal Atomic # 6 Polarization: -69.19 SS G_CDS: 3.45 Total: -65.74 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.26 Total: -69.69 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.92 kcal Total: -64.81 4.46 -60.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313415438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.088 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds