Wall clock time and date at job start Tue Mar 31 2020 10:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 C 1.50696 * 109.47004 * 240.00110 * 2 1 3 5 5 H 1.07998 * 120.00172 * 239.99857 * 4 2 1 6 6 C 1.37884 * 120.00097 * 59.99741 * 4 2 1 7 7 N 1.31512 * 119.99701 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47090 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47033 * 120.00325 * 8 6 4 11 11 H 1.48496 * 109.47025 * 240.00230 * 8 6 4 12 12 C 1.52996 * 109.47031 * 120.00119 * 2 1 3 13 13 N 1.46502 * 109.47064 * 299.99959 * 12 2 1 14 14 C 1.34779 * 120.00008 * 180.02562 * 13 12 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 12 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50701 * 119.85431 * 180.30234 * 19 18 17 21 21 F 1.39899 * 109.47604 * 270.26258 * 20 19 18 22 22 F 1.39908 * 109.46961 * 30.26073 * 20 19 18 23 23 F 1.39898 * 109.47418 * 150.25330 * 20 19 18 24 24 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 25 25 C 1.37959 * 120.14427 * 359.71588 * 24 19 18 26 26 H 1.08993 * 109.47261 * 299.99606 * 1 2 3 27 27 H 1.08996 * 109.47135 * 59.99958 * 1 2 3 28 28 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47483 * 300.00311 * 3 2 1 31 31 H 1.08998 * 109.47098 * 59.99730 * 3 2 1 32 32 H 0.97001 * 119.99324 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46715 * 180.02562 * 12 2 1 34 34 H 1.08991 * 109.47434 * 60.00168 * 12 2 1 35 35 H 0.96996 * 120.00414 * 0.02562 * 13 12 2 36 36 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 38 38 H 1.07996 * 119.93371 * 179.69885 * 24 19 18 39 39 H 1.07997 * 120.07494 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5772 -1.4786 3.7810 16 6 1.3853 0.2064 4.8767 17 6 1.7215 -0.2672 6.1459 18 6 1.2536 0.3844 7.2682 19 6 0.4623 1.5118 7.1377 20 6 -0.0397 2.2225 8.3681 21 9 -1.2717 1.6805 8.7499 22 9 0.8825 2.0624 9.4080 23 9 -0.1958 3.5845 8.0891 24 6 0.1253 1.9865 5.8826 25 6 0.5818 1.3409 4.7521 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 0.7095 1.1618 -3.4844 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9937 0.7578 2.3565 36 1 2.3429 -1.1445 6.2490 37 1 1.5093 0.0163 8.2508 38 1 -0.4968 2.8642 5.7875 39 1 0.3177 1.7122 3.7730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315899394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:20 Heat of formation + Delta-G solvation = -170.241278 kcal Electronic energy + Delta-G solvation = -25748.948245 eV Core-core repulsion = 21434.267953 eV Total energy + Delta-G solvation = -4314.680292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.46083 -47.97609 -47.91971 -40.29322 -38.56448 -36.45310 -33.60318 -32.41449 -31.49680 -30.75513 -27.08200 -25.80859 -25.60699 -24.88523 -23.18308 -22.74787 -20.42751 -19.10463 -18.79582 -18.74592 -18.62226 -17.75263 -16.03895 -15.75304 -15.29635 -14.98053 -14.90458 -14.79743 -14.76438 -14.51311 -14.38188 -14.20651 -14.10512 -14.07407 -13.77407 -13.30575 -13.15260 -12.97218 -12.67186 -12.27425 -11.96138 -11.56746 -11.47533 -11.26853 -10.94053 -10.71516 -10.47264 -10.26638 -9.84216 -9.72212 -9.54645 -9.44098 -9.38072 -8.85874 -8.57706 -8.41104 -6.08150 -4.18305 0.25782 0.92441 2.32795 2.65294 3.23714 3.32421 3.34428 3.37449 3.49199 3.59370 3.69835 4.11214 4.35283 4.43432 4.47264 4.75646 4.91025 5.04323 5.19084 5.22047 5.53381 5.76450 5.77567 5.96378 6.14225 6.22543 6.32315 6.42094 6.65209 6.72799 6.83271 6.87304 6.93346 7.26783 7.47748 7.63350 7.85514 7.93508 8.06464 8.30418 8.46400 8.82470 9.48035 10.93412 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.002560 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.547172 B =10933.894802 C =11467.722722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.542 3.458 15 O -0.541 6.541 16 C -0.090 4.090 17 C -0.066 4.066 18 C -0.078 4.078 19 C -0.170 4.170 20 C 0.509 3.491 21 F -0.176 7.176 22 F -0.177 7.177 23 F -0.176 7.176 24 C -0.076 4.076 25 C -0.089 4.089 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 4.505 19.298 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.327 3.673 15 O -0.420 6.420 16 C -0.094 4.094 17 C -0.084 4.084 18 C -0.097 4.097 19 C -0.172 4.172 20 C 0.454 3.546 21 F -0.157 7.157 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.094 4.094 25 C -0.108 4.108 26 H 0.024 0.976 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.235 0.765 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.788 3.926 19.206 19.801 hybrid contribution -0.098 0.137 -0.687 0.708 sum -2.886 4.063 18.519 19.178 Atomic orbital electron populations 1.21847 0.97700 0.99297 1.00094 1.18375 0.92841 0.92796 0.90521 1.21845 0.98713 0.98286 1.00097 1.21008 1.31542 1.12165 0.89801 0.92306 1.24881 0.94805 0.94909 0.98904 1.69805 1.36663 1.22722 1.23215 0.86505 0.78664 0.79753 0.82913 1.19735 1.21037 1.21031 1.21824 0.98408 0.95937 0.83039 1.46300 1.51858 1.31564 1.05907 1.18191 0.81195 0.84449 0.83432 1.90764 1.38268 1.26186 1.86806 1.20484 0.98136 0.95974 0.94772 1.21301 0.97532 0.99462 0.90145 1.20924 0.95335 0.93315 1.00081 1.20145 1.04666 0.99700 0.92659 1.18304 0.75490 0.77058 0.83700 1.93237 1.44494 1.85719 1.92255 1.93198 1.66286 1.95310 1.61008 1.93200 1.95552 1.33401 1.93572 1.20887 0.98366 0.99624 0.90517 1.21417 0.95932 0.94194 0.99256 0.97625 0.89461 0.95315 0.95311 0.89464 0.97618 0.92998 0.92302 0.92300 0.76519 0.83353 0.84100 0.84024 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 4 C -0.51 -12.87 8.01 -34.44 -0.28 -13.14 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.97 9.35 55.43 0.52 -22.45 16 8 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.13 2.63 4.50 -4.04 -0.02 2.61 16 13 N -0.71 -11.81 4.91 -61.25 -0.30 -12.11 16 14 C 0.54 8.92 7.77 -12.33 -0.10 8.82 16 15 O -0.54 -10.68 16.35 5.32 0.09 -10.59 16 16 C -0.09 -1.15 5.87 -104.97 -0.62 -1.77 16 17 C -0.07 -0.73 9.60 -39.19 -0.38 -1.11 16 18 C -0.08 -0.74 9.38 -39.64 -0.37 -1.11 16 19 C -0.17 -1.63 5.46 -104.53 -0.57 -2.20 16 20 C 0.51 4.75 3.36 36.01 0.12 4.87 16 21 F -0.18 -1.73 17.30 2.25 0.04 -1.70 16 22 F -0.18 -1.67 16.46 2.25 0.04 -1.63 16 23 F -0.18 -1.68 16.45 2.25 0.04 -1.64 16 24 C -0.08 -0.71 9.38 -39.64 -0.37 -1.08 16 25 C -0.09 -0.94 9.54 -39.18 -0.37 -1.31 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 31 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 5.88 4.20 -40.82 -0.17 5.71 16 36 H 0.15 1.62 7.65 -52.49 -0.40 1.22 16 37 H 0.14 1.02 7.60 -52.49 -0.40 0.62 16 38 H 0.14 1.04 7.59 -52.49 -0.40 0.64 16 39 H 0.14 1.30 6.41 -52.49 -0.34 0.96 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -27.62 334.29 -6.37 -33.99 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.28 Total: 3.59 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.52 Total: -7.74 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.22 Total: -34.56 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.11 Total: -4.97 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.62 -6.37 -33.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315899394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.255 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds